Detecting Ca2+ sparks on stationary and varying baselines

Peter Bankhead, C Norman Scholfield, Tim M Curtis, J Graham McGeown

Research output: Contribution to journalArticlepeer-review

Abstract

Studies concerning the physiological significance of Ca(2+) sparks often depend on the detection and measurement of large populations of events in noisy microscopy images. Automated detection methods have been developed to quickly and objectively distinguish potential sparks from noise artifacts. However, previously described algorithms are not suited to the reliable detection of sparks in images where the local baseline fluorescence and noise properties can vary significantly, and risk introducing additional bias when applied to such data sets. Here, we describe a new, conceptually straightforward approach to spark detection in linescans that addresses this issue by combining variance stabilization with local baseline subtraction. We also show that in addition to greatly increasing the range of images in which sparks can be automatically detected, the use of a more accurate noise model enables our algorithm to achieve similar detection sensitivities with fewer false positives than previous approaches when applied both to synthetic and experimental data sets. We propose, therefore, that it might be a useful tool for improving the reliability and objectivity of spark analysis in general, and describe how it might be further optimized for specific applications.

Original languageEnglish
Pages (from-to)C717-28
JournalAmerican Journal of Physiology - Cell Physiology
Volume301
Issue number3
DOIs
Publication statusPublished - Sep 2011

Keywords

  • Algorithms
  • Animals
  • Arterioles/metabolism
  • Calcium Signaling/physiology
  • Computer Simulation
  • Image Processing, Computer-Assisted/methods
  • Microscopy, Confocal/methods
  • Microscopy, Fluorescence/methods
  • Muscle, Smooth, Vascular/metabolism
  • Predictive Value of Tests
  • Rats
  • Rats, Sprague-Dawley
  • Retinal Artery/metabolism
  • Signal-To-Noise Ratio

Fingerprint

Dive into the research topics of 'Detecting Ca2+ sparks on stationary and varying baselines'. Together they form a unique fingerprint.

Cite this