TY - JOUR
T1 - Detecting multiple retinal diseases in ultra-widefield fundus imaging and data-driven identification of informative regions with deep learning
AU - Engelmann, Justin
AU - Mctrusty, Alice D.
AU - Maccormick, Ian J. C.
AU - Pead, Emma
AU - Storkey, Amos
AU - Bernabeu, Miguel O.
N1 - Funding Information:
We thank H. Masumoto and H. Tabuchi as well as D. Nagasato, S. Nakakura, M. Kameoka, R. Aoki, T. Sogawa, S. Matsuba, H. Tanabe, T. Nagasawa, Y. Yoshizumi, T. Sonobe, T. Yamauchi and all their colleagues at Tsukazaki Hospital for releasing the TOP dataset. This is a great contribution to AI research in ophthalmology for which we are most grateful. We also thank the American Society of Retina Specialists for their Retina Image Bank, and RetinaRocks for their Image Library. We further thank all users that submitted images for research use to these online repositories or elsewhere. This work was supported by the United Kingdom Research and Innovation (grant EP/S02431X/1), UKRI Centre for Doctoral Training in Biomedical AI at the University of Edinburgh, School of Informatics. For the purpose of open access, the author has applied a creative commons attribution (CC BY) licence to any author accepted manuscript version arising. This work was supported by The Royal College of Surgeons of Edinburgh, Sight Scotland, The RS Macdonald Charitable Trust, Chief Scientist Office, and Edinburgh & Lothians Health Foundation through a proof-of-concept award for the SCONe project. Grant EP/S02431X/1: J.E. SCONe project grants: A.D.M. and E.P.
Funding Information:
We thank H. Masumoto and H. Tabuchi as well as D. Nagasato, S. Nakakura, M. Kameoka, R. Aoki, T. Sogawa, S. Matsuba, H. Tanabe, T. Nagasawa, Y. Yoshizumi, T. Sonobe, T. Yamauchi and all their colleagues at Tsukazaki Hospital for releasing the TOP dataset. This is a great contribution to AI research in ophthalmology for which we are most grateful. We also thank the American Society of Retina Specialists for their Retina Image Bank, and RetinaRocks for their Image Library. We further thank all users that submitted images for research use to these online repositories or elsewhere. This work was supported by the United Kingdom Research and Innovation (grant EP/S02431X/1), UKRI Centre for Doctoral Training in Biomedical AI at the University of Edinburgh, School of Informatics. For the purpose of open access, the author has applied a creative commons attribution (CC BY) licence to any author accepted manuscript version arising. This work was supported by The Royal College of Surgeons of Edinburgh, Sight Scotland, The RS Macdonald Charitable Trust, Chief Scientist Office, and Edinburgh & Lothians Health Foundation through a proof-of-concept award for the SCONe project. Grant EP/S02431X/1: J.E. SCONe project grants: A.D.M. and E.P.
Publisher Copyright:
© 2022, The Author(s), under exclusive licence to Springer Nature Limited.
PY - 2022/12/8
Y1 - 2022/12/8
N2 - Ultra-widefield (UWF) imaging is a promising modality that captures a larger retinal field of view compared with traditional fundus photography. Previous studies have shown that deep learning models are effective for detecting retinal disease in UWF images, but primarily considered individual diseases under less-than-realistic conditions (excluding images with other diseases, artefacts, comorbidities or borderline cases; and balancing healthy and diseased images) and did not systematically investigate which regions of the UWF images are relevant for disease detection. Here we first improve on the state of the field by proposing a deep learning model that can recognize multiple retinal diseases under more realistic conditions than what has previously been considered. We then use global explainability methods to identify which regions of the UWF images the model generally attends to. Our model performs very well, separating between healthy and diseased retinas with an area under the receiver operating characteristic curve (AUC) of 0.9196 (±0.0001) on an internal test set, and an AUC of 0.9848 (±0.0004) on a challenging, external test set. When diagnosing specific diseases, the model attends to regions where we would expect those diseases to occur. We further identify the posterior pole as the most important region in a purely data-driven fashion. Surprisingly, 10% of the image around the posterior pole is sufficient for achieving comparable performance across all labels to having the full images available.
AB - Ultra-widefield (UWF) imaging is a promising modality that captures a larger retinal field of view compared with traditional fundus photography. Previous studies have shown that deep learning models are effective for detecting retinal disease in UWF images, but primarily considered individual diseases under less-than-realistic conditions (excluding images with other diseases, artefacts, comorbidities or borderline cases; and balancing healthy and diseased images) and did not systematically investigate which regions of the UWF images are relevant for disease detection. Here we first improve on the state of the field by proposing a deep learning model that can recognize multiple retinal diseases under more realistic conditions than what has previously been considered. We then use global explainability methods to identify which regions of the UWF images the model generally attends to. Our model performs very well, separating between healthy and diseased retinas with an area under the receiver operating characteristic curve (AUC) of 0.9196 (±0.0001) on an internal test set, and an AUC of 0.9848 (±0.0004) on a challenging, external test set. When diagnosing specific diseases, the model attends to regions where we would expect those diseases to occur. We further identify the posterior pole as the most important region in a purely data-driven fashion. Surprisingly, 10% of the image around the posterior pole is sufficient for achieving comparable performance across all labels to having the full images available.
U2 - 10.1038/s42256-022-00566-5
DO - 10.1038/s42256-022-00566-5
M3 - Article
SN - 2522-5839
JO - Nature Machine Intelligence
JF - Nature Machine Intelligence
ER -