Developing the eHistology Atlas

Lorna Richardson, Liz Graham, J. Moss, Nicholas Burton, Yogmatee Roochun, Chris Armit, Richard Baldock

Research output: Contribution to journalArticlepeer-review

Abstract

The eMouseAtlas project has undertaken to generate a new resource providing access to high-resolution colour images of the slides used in the renowned textbook 'The Atlas of Mouse Development' by Matthew H. Kaufman. The original histology slides were digitized, and the associated anatomy annotations captured for display in the new resource. These annotations were assigned to objects in the standard reference anatomy ontology, allowing the eHistology resource to be linked to other data resources including the Edinburgh Mouse Atlas Gene-Expression database (EMAGE) an the Mouse Genome Informatics (MGI) gene-expression database (GXD). The provision of the eHistology Atlas resource was assisted greatly by the expertise of the eMouseAtlas project in delivering large image datasets within a web environment, using IIP3D technology. This technology also permits future extensions to the resource through the addition of further layers of data and annotations to the resource.
Original languageEnglish
JournalDatabase
DOIs
Publication statusPublished - Nov 2015

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