Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method

Tamás Székely, Kevin Burrage, Konstantinos C Zygalakis, Manuel Barrio

Research output: Contribution to journalArticlepeer-review

Abstract

Biochemical systems with relatively low numbers of components must be simulated stochastically in order to capture their inherent noise. Although there has recently been considerable work on discrete stochastic solvers, there is still a need for numerical methods that are both fast and accurate. The Bulirsch-Stoer method is an established method for solving ordinary differential equations that possesses both of these qualities.
Original languageEnglish
Article number71
JournalBMC Systems Biology
Volume8
Issue number1
DOIs
Publication statusPublished - 18 Jun 2014

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