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Abstract
Because of the huge number of partitions of even a moderately sized dataset, even when Bayes factors have a closed form, in model-based clustering a comprehensive search for the highest scoring (MAP) partition is usually impossible. However, when each cluster in a partition has a signature and it is known that some signatures are of scientific interest whilst others are not, it is possible, within a Bayesian framework, to develop search algorithms which are guided by these cluster signatures. Such algorithms can be expected to find better partitions more quickly. In this paper we develop a framework within which these ideas can be formalized. We then briefly illustrate the efficacy of the proposed guided search on a microarray time coursed at a set where the clustering objective is to identify clusters of genes with different types of circadian expression profiles.
| Original language | English |
|---|---|
| Pages (from-to) | 539-572 |
| Number of pages | 34 |
| Journal | Bayesian analysis |
| Volume | 4 |
| Issue number | 3 |
| DOIs | |
| Publication status | Published - 2009 |
Keywords / Materials (for Non-textual outputs)
- TIME-SERIES
- Transcriptomics
- Circadian Rhythms
- Biological Clocks
- Arabidopsis thaliana
- Bayesian inference
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Dive into the research topics of 'Efficient Utility-based Clustering over High Dimensional Partition Spaces'. Together they form a unique fingerprint.Projects
- 1 Finished
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Modelling circadian gene regulation in Arabidopsis thaliana
Millar, A. (Principal Investigator)
Biotechnology and Biological Sciences Research Council
1/03/05 → 30/09/06
Project: Research