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Abstract
Standard molecular dynamics (MD) simulations generally make use of a basic description of intermolecular forces which consists of fixed, pairwise, atom-centred Coulomb, van der Waals and short-range repulsive terms. Important interactions such as many-body polarisation and many-body dispersion which are sensitive to changes in the environment are usually neglected, and their effects treated effectively within mean-field approximations to reproduce a single thermodynamic state point or physical environment. This leads to difficulties in modelling the complex interfaces of interest today where the behaviour may be quite different from the regime of parameterisation. Here, we describe the construction and properties of a Gaussian coarse-grained electronic structure, which naturally generates many-body polarisation and dispersion interactions. The electronic structure arises from a fully quantum mechanical treatment of a set of distributed quantum Drude oscillators (QDOs), harmonic atoms which interact with each other and other moieties via electrostatic (Coulomb) interactions; this coarse-grained approach is capable of describing many-body polarisation and dispersion but not short-range interactions which must be parametrised. We describe how on-the-fly forces due to this exchange-free Gaussian model may be generated with linear scale in the number of atoms in the system using an adiabatic path integral molecular dynamics for quantum Drude oscillators technique (APIMD-QDO). We demonstrate the applicability of the QDO approach to realistic systems via a study of the liquid-vapour interface of water.
Original language | English |
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Pages (from-to) | 3465-3477 |
Number of pages | 13 |
Journal | Molecular Physics |
Volume | 111 |
Issue number | 22-23 |
DOIs | |
Publication status | Published - 1 Dec 2013 |
Keywords / Materials (for Non-textual outputs)
- water
- quantum Drude oscillator
- path integral methods
- coarse-grained model
- many-body dispersion
- DENSITY-FUNCTIONAL THEORY
- LIQUID-VAPOR INTERFACE
- DIELECTRIC-CONSTANTS
- PATH-INTEGRALS
- EWALD METHOD
- N-ALKANES
- WATER
- SYSTEMS
- ALGORITHMS
- SIMULATION
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- 1 Finished
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Structure-Function Studies of Antimicrobial and Fusogenic peptides by solid state NMR Spectroscopy and MD Simulation
Crain, J.
1/06/11 → 31/05/14
Project: Research