Ensembl 2002: Accommodating comparative genomics

M. Clamp; D. Andrews; D. Barker; P. Bevan; G. Cameron; Y. Chen; L. Clark; T. Cox; J. Cuff; V. Curwen; T. Down; R. Durbin; E. Eyras; J. Gilbert; M. Hammond; T. Hubbard; A. Kasprzyk; D. Keefe; H. Lehvaslaiho; V. Iyer; C. Melsopp; E. Mongin; R. Pettett; S. Potter; A. Rust; E. Schmidt; S. Searle; G. Slater; J. Smith; W. Spooner; A. Stabenau; J. Stalker; E. Stupka; A. Ureta-Vidal; I. Vastrik; E. Birney

doi:10.1093/nar/gkg083

Ensembl 2002: Accommodating comparative genomics

M. Clamp, D. Andrews, D. Barker, P. Bevan, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, T. Hubbard^*, A. Kasprzyk, D. Keefe, H. Lehvaslaiho, V. IyerC. Melsopp, E. Mongin, R. Pettett, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, E. Birney

^*Corresponding author for this work

School of Biological Sciences

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Abstract / Description of output

The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of human, mouse and other genome sequences, available as either an interactive web site or as flat files. Ensembl also integrates manually annotated gene structures from external sources where available. As well as being one of the leading sources of genome annotation, Ensembl is an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements. These range from sequence analysis to data storage and visualisation and installations exist around the world in both companies and at academic sites. With both human and mouse genome sequences available and more vertebrate sequences to follow, many of the recent developments in Ensembl have focusing on developing automatic comparative genome analysis and visualisation.

Original language	English
Pages (from-to)	38-42
Number of pages	5
Journal	Nucleic Acids Research
Volume	31
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkg083
Publication status	Published - 1 Jan 2003

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Clamp, M., Andrews, D., Barker, D., Bevan, P., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., Durbin, R., Eyras, E., Gilbert, J., Hammond, M., Hubbard, T., Kasprzyk, A., Keefe, D., Lehvaslaiho, H., ... Birney, E. (2003). Ensembl 2002: Accommodating comparative genomics. Nucleic Acids Research, 31(1), 38-42. https://doi.org/10.1093/nar/gkg083

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abstract = "The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of human, mouse and other genome sequences, available as either an interactive web site or as flat files. Ensembl also integrates manually annotated gene structures from external sources where available. As well as being one of the leading sources of genome annotation, Ensembl is an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements. These range from sequence analysis to data storage and visualisation and installations exist around the world in both companies and at academic sites. With both human and mouse genome sequences available and more vertebrate sequences to follow, many of the recent developments in Ensembl have focusing on developing automatic comparative genome analysis and visualisation.",

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Clamp, M, Andrews, D, Barker, D, Bevan, P, Cameron, G, Chen, Y, Clark, L, Cox, T, Cuff, J, Curwen, V, Down, T, Durbin, R, Eyras, E, Gilbert, J, Hammond, M, Hubbard, T, Kasprzyk, A, Keefe, D, Lehvaslaiho, H, Iyer, V, Melsopp, C, Mongin, E, Pettett, R, Potter, S, Rust, A, Schmidt, E, Searle, S, Slater, G, Smith, J, Spooner, W, Stabenau, A, Stalker, J, Stupka, E, Ureta-Vidal, A, Vastrik, I & Birney, E 2003, 'Ensembl 2002: Accommodating comparative genomics', Nucleic Acids Research, vol. 31, no. 1, pp. 38-42. https://doi.org/10.1093/nar/gkg083

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AU - Clamp, M.

AU - Andrews, D.

AU - Barker, D.

AU - Bevan, P.

AU - Cameron, G.

AU - Chen, Y.

AU - Clark, L.

AU - Cox, T.

AU - Cuff, J.

AU - Curwen, V.

AU - Down, T.

AU - Durbin, R.

AU - Eyras, E.

AU - Gilbert, J.

AU - Hammond, M.

AU - Hubbard, T.

AU - Kasprzyk, A.

AU - Keefe, D.

AU - Lehvaslaiho, H.

AU - Iyer, V.

AU - Melsopp, C.

AU - Mongin, E.

AU - Pettett, R.

AU - Potter, S.

AU - Rust, A.

AU - Schmidt, E.

AU - Searle, S.

AU - Slater, G.

AU - Smith, J.

AU - Spooner, W.

AU - Stabenau, A.

AU - Stalker, J.

AU - Stupka, E.

AU - Ureta-Vidal, A.

AU - Vastrik, I.

AU - Birney, E.

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JO - Nucleic Acids Research

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Ensembl 2002: Accommodating comparative genomics

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