Establishing African genomics and bioinformatics programs through annual regional workshops

Abdoallah Sharaf; Lucky Tendani Nesengani; Ichrak Hayah; Josiah Ochieng Kuja; Sinebongo Mdyogolo; Taiwo Crossby Omotoriogun; Blessing Adanta Odogwu; Girish Beedessee; Rae Marvin Smith; Abdelhamid Barakat; Acclaim M Moila; Adil El Hamouchi; Alia Benkahla; Amal Boukteb; Amine Elmouhtadi; Antoine Lusala Mafwila; Asmaa Mohammed Abushady; Assem Kadry Elsherif; Bulbul Ahmed; Charles Wairuri; Charlotte C Ndiribe; Chukwuike Ebuzome; Craig J Kinnear; Deborah-Fay Ndlovu; Driss Iraqi; Elmostafa El Fahime; Ermias Assefa; Faissal Ouardi; Fatima Zohra Belharfi; Fatim Zohra Tmimi; Fatu Badiane Markey; Fouzia Radouani; Francis Zeukeng; Georges Lelo Mvumbi; Hamilton Ganesan; Mariem Hanachi; Helen Nigussie; Hicham Charoute; Ichrak Benamri; Ikram Mkedder; Imane Haddadi; Issam Meftah-Kadmiri; Jackson Franco Mubiru; Jean-Baka Kodjo Domelevo Entfellner; Joan Bayowa Rokani; Joel Ogwang; Jude Bigoga Daiga; Judy Omumbo; Justin Eze Ideozu; Khaoula Errafii; Kim Labuschagne; Komi Koukoura Komi; Libert Brice Tonfack; Lydia Hadjeras; Madeleine Ramantswana; Mamohale Chaisi; Marietjie W Botes; Mariëtte Kilian; Marija Kvas; Marouane Melloul; Melek Chaouch; Meriem Khyatti; Michael Abdo; Mmatshepho Phasha-Muchemenye; Mohamed Hijri; Mohammed Rida Mediouni; Mohammed Ahmed Hassan; Mohammed Piro; Monica Mwale; Mossaab Maaloum; Mudzuli Mavhunga; Nicholas Abraham Olivier; Oumaima Aminou; Oumayma Arbani; Oussema Souiai; Pierre François Djocgoue; Rachid Mentag; Renate Dorothea Zipfel; Rolland Bantar Tata; Rosette Megnekou; Sadik Muzemil; Sadye Paez; Samson Pandam Salifu; Samuel Paul Kagame; Sarra Selka; Sean Edwards; Semir Bechir Suheil Gaouar; Shaimaa Roshdy Abdullah Reda; Siham Fellahi; Slimane Khayi; Soumia Ayed; Thabang Madisha; Tulsi Sahil; Ogbuagu Ugorji Udensi; Verena Ras; Victor Ezebuiro; Vincent C Duru; Xavier David; Yonas Geberemichael; Yves H Tchiechoua; Zahra Mungloo-Dilmohamud; Zhiliang Chen; Christian Happi; Thomas Kariuki; Cathrine Ziyomo; Appolinaire Djikeng; Bouabid Badaoui; Ntanganedzeni Mapholi; Anne Muigai; Julian O Osuji; ThankGod Echezona Ebenezer

doi:10.1038/s41588-024-01807-6

Establishing African genomics and bioinformatics programs through annual regional workshops

Abdoallah Sharaf, Lucky Tendani Nesengani, Ichrak Hayah, Josiah Ochieng Kuja, Sinebongo Mdyogolo, Taiwo Crossby Omotoriogun, Blessing Adanta Odogwu, Girish Beedessee, Rae Marvin Smith, Abdelhamid Barakat, Acclaim M Moila, Adil El Hamouchi, Alia Benkahla, Amal Boukteb, Amine Elmouhtadi, Antoine Lusala Mafwila, Asmaa Mohammed Abushady, Assem Kadry Elsherif, Bulbul Ahmed, Charles WairuriCharlotte C Ndiribe, Chukwuike Ebuzome, Craig J Kinnear, Deborah-Fay Ndlovu, Driss Iraqi, Elmostafa El Fahime, Ermias Assefa, Faissal Ouardi, Fatima Zohra Belharfi, Fatim Zohra Tmimi, Fatu Badiane Markey, Fouzia Radouani, Francis Zeukeng, Georges Lelo Mvumbi, Hamilton Ganesan, Mariem Hanachi, Helen Nigussie, Hicham Charoute, Ichrak Benamri, Ikram Mkedder, Imane Haddadi, Issam Meftah-Kadmiri, Jackson Franco Mubiru, Jean-Baka Kodjo Domelevo Entfellner, Joan Bayowa Rokani, Joel Ogwang, Jude Bigoga Daiga, Judy Omumbo, Justin Eze Ideozu, Khaoula Errafii, Kim Labuschagne, Komi Koukoura Komi, Libert Brice Tonfack, Lydia Hadjeras, Madeleine Ramantswana, Mamohale Chaisi, Marietjie W Botes, Mariëtte Kilian, Marija Kvas, Marouane Melloul, Melek Chaouch, Meriem Khyatti, Michael Abdo, Mmatshepho Phasha-Muchemenye, Mohamed Hijri, Mohammed Rida Mediouni, Mohammed Ahmed Hassan, Mohammed Piro, Monica Mwale, Mossaab Maaloum, Mudzuli Mavhunga, Nicholas Abraham Olivier, Oumaima Aminou, Oumayma Arbani, Oussema Souiai, Pierre François Djocgoue, Rachid Mentag, Renate Dorothea Zipfel, Rolland Bantar Tata, Rosette Megnekou, Sadik Muzemil, Sadye Paez, Samson Pandam Salifu, Samuel Paul Kagame, Sarra Selka, Sean Edwards, Semir Bechir Suheil Gaouar, Shaimaa Roshdy Abdullah Reda, Siham Fellahi, Slimane Khayi, Soumia Ayed, Thabang Madisha, Tulsi Sahil, Ogbuagu Ugorji Udensi, Verena Ras, Victor Ezebuiro, Vincent C Duru, Xavier David, Yonas Geberemichael, Yves H Tchiechoua, Zahra Mungloo-Dilmohamud, Zhiliang Chen, Christian Happi, Thomas Kariuki, Cathrine Ziyomo, Appolinaire Djikeng, Bouabid Badaoui, Ntanganedzeni Mapholi, Anne Muigai, Julian O Osuji, ThankGod Echezona Ebenezer

Research output: Contribution to journal › Review article › peer-review

Abstract

The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources. Here, we discuss the implementation of transformative strategies, such as expanding the regional workshop model of AfricaBP to involve multiple countries, institutions and partners, including the proposed creation of an African digital database with sequence information relating to both biodiversity and agriculture. This will ultimately help create a critical mass of skilled genomics and bioinformatics scientists across Africa.

Original language	English
Pages (from-to)	1556-1565
Journal	Nature Genetics
Volume	56
Issue number	8
Early online date	8 Jul 2024
DOIs	https://doi.org/10.1038/s41588-024-01807-6
Publication status	Published - Aug 2024

Keywords / Materials (for Non-textual outputs)

Africa
Biodiversity
Computational Biology/methods
Genomics/education
Humans

Access to Document

10.1038/s41588-024-01807-6

Ebenezer_V3-tracked_1714412781_1_TGE(1)Accepted author manuscript, 363 KBLicence: Creative Commons: Attribution (CC-BY)

Identifying the genomic basis of complex traits in farmed animals
Headon, D. (Principal Investigator)
1/04/23 → 31/03/28
Project: Research
Defining genome activity
Headon, D. (Principal Investigator)
1/04/23 → 31/03/28
Project: Research

Cite this

Sharaf, A., Nesengani, L. T., Hayah, I., Kuja, J. O., Mdyogolo, S., Omotoriogun, T. C., Odogwu, B. A., Beedessee, G., Smith, R. M., Barakat, A., Moila, A. M., El Hamouchi, A., Benkahla, A., Boukteb, A., Elmouhtadi, A., Mafwila, A. L., Abushady, A. M., Elsherif, A. K., Ahmed, B., ... Ebenezer, T. E. (2024). Establishing African genomics and bioinformatics programs through annual regional workshops. Nature Genetics, 56(8), 1556-1565. https://doi.org/10.1038/s41588-024-01807-6

@article{f40165a851db402dae996956729279fe,

title = "Establishing African genomics and bioinformatics programs through annual regional workshops",

abstract = "The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources. Here, we discuss the implementation of transformative strategies, such as expanding the regional workshop model of AfricaBP to involve multiple countries, institutions and partners, including the proposed creation of an African digital database with sequence information relating to both biodiversity and agriculture. This will ultimately help create a critical mass of skilled genomics and bioinformatics scientists across Africa.",

keywords = "Africa, Biodiversity, Computational Biology/methods, Genomics/education, Humans",

author = "Abdoallah Sharaf and Nesengani, \{Lucky Tendani\} and Ichrak Hayah and Kuja, \{Josiah Ochieng\} and Sinebongo Mdyogolo and Omotoriogun, \{Taiwo Crossby\} and Odogwu, \{Blessing Adanta\} and Girish Beedessee and Smith, \{Rae Marvin\} and Abdelhamid Barakat and Moila, \{Acclaim M\} and \{El Hamouchi\}, Adil and Alia Benkahla and Amal Boukteb and Amine Elmouhtadi and Mafwila, \{Antoine Lusala\} and Abushady, \{Asmaa Mohammed\} and Elsherif, \{Assem Kadry\} and Bulbul Ahmed and Charles Wairuri and Ndiribe, \{Charlotte C\} and Chukwuike Ebuzome and Kinnear, \{Craig J\} and Deborah-Fay Ndlovu and Driss Iraqi and \{El Fahime\}, Elmostafa and Ermias Assefa and Faissal Ouardi and Belharfi, \{Fatima Zohra\} and Tmimi, \{Fatim Zohra\} and Markey, \{Fatu Badiane\} and Fouzia Radouani and Francis Zeukeng and Mvumbi, \{Georges Lelo\} and Hamilton Ganesan and Mariem Hanachi and Helen Nigussie and Hicham Charoute and Ichrak Benamri and Ikram Mkedder and Imane Haddadi and Issam Meftah-Kadmiri and Mubiru, \{Jackson Franco\} and \{Domelevo Entfellner\}, \{Jean-Baka Kodjo\} and Rokani, \{Joan Bayowa\} and Joel Ogwang and Daiga, \{Jude Bigoga\} and Judy Omumbo and Ideozu, \{Justin Eze\} and Khaoula Errafii and Kim Labuschagne and Komi, \{Komi Koukoura\} and Tonfack, \{Libert Brice\} and Lydia Hadjeras and Madeleine Ramantswana and Mamohale Chaisi and Botes, \{Marietjie W\} and Mari{\"e}tte Kilian and Marija Kvas and Marouane Melloul and Melek Chaouch and Meriem Khyatti and Michael Abdo and Mmatshepho Phasha-Muchemenye and Mohamed Hijri and Mediouni, \{Mohammed Rida\} and Hassan, \{Mohammed Ahmed\} and Mohammed Piro and Monica Mwale and Mossaab Maaloum and Mudzuli Mavhunga and Olivier, \{Nicholas Abraham\} and Oumaima Aminou and Oumayma Arbani and Oussema Souiai and Djocgoue, \{Pierre Fran{\c c}ois\} and Rachid Mentag and Zipfel, \{Renate Dorothea\} and Tata, \{Rolland Bantar\} and Rosette Megnekou and Sadik Muzemil and Sadye Paez and Salifu, \{Samson Pandam\} and Kagame, \{Samuel Paul\} and Sarra Selka and Sean Edwards and Gaouar, \{Semir Bechir Suheil\} and Reda, \{Shaimaa Roshdy Abdullah\} and Siham Fellahi and Slimane Khayi and Soumia Ayed and Thabang Madisha and Tulsi Sahil and Udensi, \{Ogbuagu Ugorji\} and Verena Ras and Victor Ezebuiro and Duru, \{Vincent C\} and Xavier David and Yonas Geberemichael and Tchiechoua, \{Yves H\} and Zahra Mungloo-Dilmohamud and Zhiliang Chen and Christian Happi and Thomas Kariuki and Cathrine Ziyomo and Appolinaire Djikeng and Bouabid Badaoui and Ntanganedzeni Mapholi and Anne Muigai and Osuji, \{Julian O\} and Ebenezer, \{ThankGod Echezona\}",

note = "{\textcopyright} 2024. Springer Nature America, Inc.",

year = "2024",

month = aug,

doi = "10.1038/s41588-024-01807-6",

language = "English",

volume = "56",

pages = "1556--1565",

journal = "Nature Genetics",

issn = "1061-4036",

publisher = "Nature Publishing Group",

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Sharaf, A, Nesengani, LT, Hayah, I, Kuja, JO, Mdyogolo, S, Omotoriogun, TC, Odogwu, BA, Beedessee, G, Smith, RM, Barakat, A, Moila, AM, El Hamouchi, A, Benkahla, A, Boukteb, A, Elmouhtadi, A, Mafwila, AL, Abushady, AM, Elsherif, AK, Ahmed, B, Wairuri, C, Ndiribe, CC, Ebuzome, C, Kinnear, CJ, Ndlovu, D-F, Iraqi, D, El Fahime, E, Assefa, E, Ouardi, F, Belharfi, FZ, Tmimi, FZ, Markey, FB, Radouani, F, Zeukeng, F, Mvumbi, GL, Ganesan, H, Hanachi, M, Nigussie, H, Charoute, H, Benamri, I, Mkedder, I, Haddadi, I, Meftah-Kadmiri, I, Mubiru, JF, Domelevo Entfellner, J-BK, Rokani, JB, Ogwang, J, Daiga, JB, Omumbo, J, Ideozu, JE, Errafii, K, Labuschagne, K, Komi, KK, Tonfack, LB, Hadjeras, L, Ramantswana, M, Chaisi, M, Botes, MW, Kilian, M, Kvas, M, Melloul, M, Chaouch, M, Khyatti, M, Abdo, M, Phasha-Muchemenye, M, Hijri, M, Mediouni, MR, Hassan, MA, Piro, M, Mwale, M, Maaloum, M, Mavhunga, M, Olivier, NA, Aminou, O, Arbani, O, Souiai, O, Djocgoue, PF, Mentag, R, Zipfel, RD, Tata, RB, Megnekou, R, Muzemil, S, Paez, S, Salifu, SP, Kagame, SP, Selka, S, Edwards, S, Gaouar, SBS, Reda, SRA, Fellahi, S, Khayi, S, Ayed, S, Madisha, T, Sahil, T, Udensi, OU, Ras, V, Ezebuiro, V, Duru, VC, David, X, Geberemichael, Y, Tchiechoua, YH, Mungloo-Dilmohamud, Z, Chen, Z, Happi, C, Kariuki, T, Ziyomo, C, Djikeng, A, Badaoui, B, Mapholi, N, Muigai, A, Osuji, JO & Ebenezer, TE 2024, 'Establishing African genomics and bioinformatics programs through annual regional workshops', Nature Genetics, vol. 56, no. 8, pp. 1556-1565. https://doi.org/10.1038/s41588-024-01807-6

TY - JOUR

T1 - Establishing African genomics and bioinformatics programs through annual regional workshops

AU - Sharaf, Abdoallah

AU - Nesengani, Lucky Tendani

AU - Hayah, Ichrak

AU - Kuja, Josiah Ochieng

AU - Mdyogolo, Sinebongo

AU - Omotoriogun, Taiwo Crossby

AU - Odogwu, Blessing Adanta

AU - Beedessee, Girish

AU - Smith, Rae Marvin

AU - Barakat, Abdelhamid

AU - Moila, Acclaim M

AU - El Hamouchi, Adil

AU - Benkahla, Alia

AU - Boukteb, Amal

AU - Elmouhtadi, Amine

AU - Mafwila, Antoine Lusala

AU - Abushady, Asmaa Mohammed

AU - Elsherif, Assem Kadry

AU - Ahmed, Bulbul

AU - Wairuri, Charles

AU - Ndiribe, Charlotte C

AU - Ebuzome, Chukwuike

AU - Kinnear, Craig J

AU - Ndlovu, Deborah-Fay

AU - Iraqi, Driss

AU - El Fahime, Elmostafa

AU - Assefa, Ermias

AU - Ouardi, Faissal

AU - Belharfi, Fatima Zohra

AU - Tmimi, Fatim Zohra

AU - Markey, Fatu Badiane

AU - Radouani, Fouzia

AU - Zeukeng, Francis

AU - Mvumbi, Georges Lelo

AU - Ganesan, Hamilton

AU - Hanachi, Mariem

AU - Nigussie, Helen

AU - Charoute, Hicham

AU - Benamri, Ichrak

AU - Mkedder, Ikram

AU - Haddadi, Imane

AU - Meftah-Kadmiri, Issam

AU - Mubiru, Jackson Franco

AU - Domelevo Entfellner, Jean-Baka Kodjo

AU - Rokani, Joan Bayowa

AU - Ogwang, Joel

AU - Daiga, Jude Bigoga

AU - Omumbo, Judy

AU - Ideozu, Justin Eze

AU - Errafii, Khaoula

AU - Labuschagne, Kim

AU - Komi, Komi Koukoura

AU - Tonfack, Libert Brice

AU - Hadjeras, Lydia

AU - Ramantswana, Madeleine

AU - Chaisi, Mamohale

AU - Botes, Marietjie W

AU - Kilian, Mariëtte

AU - Kvas, Marija

AU - Melloul, Marouane

AU - Chaouch, Melek

AU - Khyatti, Meriem

AU - Abdo, Michael

AU - Phasha-Muchemenye, Mmatshepho

AU - Hijri, Mohamed

AU - Mediouni, Mohammed Rida

AU - Hassan, Mohammed Ahmed

AU - Piro, Mohammed

AU - Mwale, Monica

AU - Maaloum, Mossaab

AU - Mavhunga, Mudzuli

AU - Olivier, Nicholas Abraham

AU - Aminou, Oumaima

AU - Arbani, Oumayma

AU - Souiai, Oussema

AU - Djocgoue, Pierre François

AU - Mentag, Rachid

AU - Zipfel, Renate Dorothea

AU - Tata, Rolland Bantar

AU - Megnekou, Rosette

AU - Muzemil, Sadik

AU - Paez, Sadye

AU - Salifu, Samson Pandam

AU - Kagame, Samuel Paul

AU - Selka, Sarra

AU - Edwards, Sean

AU - Gaouar, Semir Bechir Suheil

AU - Reda, Shaimaa Roshdy Abdullah

AU - Fellahi, Siham

AU - Khayi, Slimane

AU - Ayed, Soumia

AU - Madisha, Thabang

AU - Sahil, Tulsi

AU - Udensi, Ogbuagu Ugorji

AU - Ras, Verena

AU - Ezebuiro, Victor

AU - Duru, Vincent C

AU - David, Xavier

AU - Geberemichael, Yonas

AU - Tchiechoua, Yves H

AU - Mungloo-Dilmohamud, Zahra

AU - Chen, Zhiliang

AU - Happi, Christian

AU - Kariuki, Thomas

AU - Ziyomo, Cathrine

AU - Djikeng, Appolinaire

AU - Badaoui, Bouabid

AU - Mapholi, Ntanganedzeni

AU - Muigai, Anne

AU - Osuji, Julian O

AU - Ebenezer, ThankGod Echezona

PY - 2024/8

Y1 - 2024/8

N2 - The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources. Here, we discuss the implementation of transformative strategies, such as expanding the regional workshop model of AfricaBP to involve multiple countries, institutions and partners, including the proposed creation of an African digital database with sequence information relating to both biodiversity and agriculture. This will ultimately help create a critical mass of skilled genomics and bioinformatics scientists across Africa.

AB - The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources. Here, we discuss the implementation of transformative strategies, such as expanding the regional workshop model of AfricaBP to involve multiple countries, institutions and partners, including the proposed creation of an African digital database with sequence information relating to both biodiversity and agriculture. This will ultimately help create a critical mass of skilled genomics and bioinformatics scientists across Africa.

KW - Africa

KW - Biodiversity

KW - Computational Biology/methods

KW - Genomics/education

KW - Humans

U2 - 10.1038/s41588-024-01807-6

DO - 10.1038/s41588-024-01807-6

M3 - Review article

C2 - 38977855

SN - 1061-4036

VL - 56

SP - 1556

EP - 1565

JO - Nature Genetics

JF - Nature Genetics

IS - 8

ER -

Establishing African genomics and bioinformatics programs through annual regional workshops

Abstract

Keywords / Materials (for Non-textual outputs)

Access to Document

Fingerprint

Projects

Identifying the genomic basis of complex traits in farmed animals

Defining genome activity

Cite this