TY - JOUR
T1 - Evidence-Driven Spatio-Temporal COVID-19 Hospitalization Prediction with Ising Dynamics
AU - Gao, Junyi
AU - Heintz, Joerg
AU - Mack, Christina
AU - Glass, Lucas
AU - Cross, Adam
AU - Sun, Jimeng
N1 - Funding Information:
This work was supported by NSF awards SCH-2205289, SCH-2014438, IIS-2034479, NIH award R01 1R01NS107291-01, IQVIA, and OSF Healthcare. J.G. acknowledges the receipt of studentship awards from the Health Data Research UK-The Alan Turing Institute Wellcome PhD Programme in Health Data Science (Grant Ref: 218529/Z/19/Z). We thank Zhen Lin from the University of Illinois Urbana Champaign for assisting with the model uncertainty estimation. Icons in the figures are designed using resources from Flaticon.com. For the purpose of open access, the author has applied a Creative Commons Attribution (CC BY) license to any author-accepted manuscript version arising from this submission.
Publisher Copyright:
© 2023, The Author(s).
PY - 2023/5/29
Y1 - 2023/5/29
N2 - In this work, we aim to accurately predict the number of hospitalizations during the COVID-19 pandemic by developing a spatiotemporal prediction model. We propose HOIST, an Ising dynamics-based deep learning model for spatiotemporal COVID-19 hospitalization prediction. By drawing the analogy between locations and lattice sites in statistical mechanics, we use the Ising dynamics to guide the model to extract and utilize spatial relationships across locations and model the complex influence of granular information from real-world clinical evidence. By leveraging rich linked databases, including insurance claims, census information, and hospital resource usage data across the U.S., we evaluate the HOIST model on the large-scale spatiotemporal COVID-19 hospitalization prediction task for 2299 counties in the U.S. In the 4-week hospitalization prediction task, HOIST achieves 368.7 mean absolute error, 0.6 R
2 and 0.89 concordance correlation coefficient score on average. Our detailed number needed to treat (NNT) and cost analysis suggest that future COVID-19 vaccination efforts may be most impactful in rural areas. This model may serve as a resource for future county and state-level vaccination efforts.
AB - In this work, we aim to accurately predict the number of hospitalizations during the COVID-19 pandemic by developing a spatiotemporal prediction model. We propose HOIST, an Ising dynamics-based deep learning model for spatiotemporal COVID-19 hospitalization prediction. By drawing the analogy between locations and lattice sites in statistical mechanics, we use the Ising dynamics to guide the model to extract and utilize spatial relationships across locations and model the complex influence of granular information from real-world clinical evidence. By leveraging rich linked databases, including insurance claims, census information, and hospital resource usage data across the U.S., we evaluate the HOIST model on the large-scale spatiotemporal COVID-19 hospitalization prediction task for 2299 counties in the U.S. In the 4-week hospitalization prediction task, HOIST achieves 368.7 mean absolute error, 0.6 R
2 and 0.89 concordance correlation coefficient score on average. Our detailed number needed to treat (NNT) and cost analysis suggest that future COVID-19 vaccination efforts may be most impactful in rural areas. This model may serve as a resource for future county and state-level vaccination efforts.
U2 - 10.1038/s41467-023-38756-3
DO - 10.1038/s41467-023-38756-3
M3 - Article
SN - 2041-1723
VL - 14
JO - Nature Communications
JF - Nature Communications
M1 - 3093
ER -