Facile: a command-line network compiler for systems biology

Fernando Siso-Nadal, Julien F Ollivier, Peter S Swain

Research output: Contribution to journalArticlepeer-review


A goal of systems biology is the quantitative modelling of biochemical networks. Yet for many biochemical systems, parameter values and even the existence of interactions between some chemical species are unknown. It is therefore important to be able to easily investigate the effects of adding or removing reactions and to easily perform a bifurcation analysis, which shows the qualitative dynamics of a model for a range of parameter values.
Original languageEnglish
Article number36
Number of pages6
JournalBMC Systems Biology
Publication statusPublished - 2007


  • Computer Simulation
  • Computer Systems
  • Computers
  • Metabolic Networks and Pathways
  • Models, Biological
  • Nonlinear Dynamics
  • Software
  • Systems Biology


Dive into the research topics of 'Facile: a command-line network compiler for systems biology'. Together they form a unique fingerprint.

Cite this