Facile: a command-line network compiler for systems biology

Fernando Siso-Nadal; Julien F Ollivier; Peter S Swain

doi:10.1186/1752-0509-1-36

Facile: a command-line network compiler for systems biology

Fernando Siso-Nadal, Julien F Ollivier, Peter S Swain

School of Biological Sciences

Research output: Contribution to journal › Article › peer-review

Abstract

A goal of systems biology is the quantitative modelling of biochemical networks. Yet for many biochemical systems, parameter values and even the existence of interactions between some chemical species are unknown. It is therefore important to be able to easily investigate the effects of adding or removing reactions and to easily perform a bifurcation analysis, which shows the qualitative dynamics of a model for a range of parameter values.

Original language	English
Article number	36
Number of pages	6
Journal	BMC Systems Biology
Volume	1
DOIs	https://doi.org/10.1186/1752-0509-1-36
Publication status	Published - 2007

Keywords

Computer Simulation
Computer Systems
Computers
Metabolic Networks and Pathways
Models, Biological
Nonlinear Dynamics
Software
Systems Biology

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10.1186/1752-0509-1-36

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abstract = "A goal of systems biology is the quantitative modelling of biochemical networks. Yet for many biochemical systems, parameter values and even the existence of interactions between some chemical species are unknown. It is therefore important to be able to easily investigate the effects of adding or removing reactions and to easily perform a bifurcation analysis, which shows the qualitative dynamics of a model for a range of parameter values.",

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KW - Computer Simulation

KW - Computer Systems

KW - Computers

KW - Metabolic Networks and Pathways

KW - Models, Biological

KW - Nonlinear Dynamics

KW - Software

KW - Systems Biology

U2 - 10.1186/1752-0509-1-36

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JO - BMC Systems Biology

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SN - 1752-0509

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Facile: a command-line network compiler for systems biology

Abstract

Keywords

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