FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

J. Severin, A. M. Waterhouse, H. Kawaji, T. Lassmann, E. van Nimwegen, P. J. Balwierz, M. J. L. de Hoon, D. A. Hume, P. Carninci, Y. Hayashizaki, H. Suzuki, C. O. Daub, A. R. R. Forrest

Research output: Contribution to journalArticlepeer-review

Abstract

EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database http://fantom.gsc.riken.jp/4/edgeexpress summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.
Original languageUndefined/Unknown
Pages (from-to)paper R39
Number of pages9
JournalGenome Biology
Volume10
Issue number4
DOIs
Publication statusPublished - 2009

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