FishMap Zv8 update - A genomic regulatory map of zebrafish

Deeksha Bhartiya; Jayant Maini; Meenakshi Sharma; Prateek Joshi; Saurabh V. Laddha; Saakshi Jalali; Ashok Patowary; Ramya Purkanti; Mukesh Lalwani; Angom Ramcharan Singh; Rajendra Chauhan; Naresh Singh; Anshu Bhardwaj; Vinod Scaria; Sridhar Sivasubbu

doi:10.1089/zeb.2009.0624

FishMap Zv8 update - A genomic regulatory map of zebrafish

Deeksha Bhartiya, Jayant Maini, Meenakshi Sharma, Prateek Joshi, Saurabh V. Laddha, Saakshi Jalali, Ashok Patowary, Ramya Purkanti, Mukesh Lalwani, Angom Ramcharan Singh, Rajendra Chauhan, Naresh Singh, Anshu Bhardwaj, Vinod Scaria^*, Sridhar Sivasubbu^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

Abstract / Description of output

The advancements in genomics technologies and the amenability to large-scale computational analysis have contributed immensely to the understanding of the zebrafish genome, its organization, and its functional correlates. Translating genomics information into biological meaning would require integration and amenability of data and tools. FishMap is a community resource for genomic datasets on zebrafish created with a vision to provide relevant and readily available information to zebrafish researchers. The present update of FishMap has kept up with the availability of the latest zebrafish genome assembly (Zv8). In this update, particular emphasis has been given to noncoding RNAs and noncoding RNA-mediated regulation in addition to genomic regulatory motifs, which are emerging areas of vertebrate biology. FishMap Zv8 update also features a sequence mapping and analysis server. Consistent with its commitment to make the information freely available to the community, FishMap features options to share data between compatible resources in addition to making it amenable to programmatic access. FishMap Zv8 update is available at http://fishmap2.igib.res.in.

Original language	English
Pages (from-to)	179-180
Number of pages	2
Journal	Zebrafish
Volume	7
Issue number	2
DOIs	https://doi.org/10.1089/zeb.2009.0624
Publication status	Published - 1 Jun 2010

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10.1089/zeb.2009.0624

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title = "FishMap Zv8 update - A genomic regulatory map of zebrafish",

abstract = "The advancements in genomics technologies and the amenability to large-scale computational analysis have contributed immensely to the understanding of the zebrafish genome, its organization, and its functional correlates. Translating genomics information into biological meaning would require integration and amenability of data and tools. FishMap is a community resource for genomic datasets on zebrafish created with a vision to provide relevant and readily available information to zebrafish researchers. The present update of FishMap has kept up with the availability of the latest zebrafish genome assembly (Zv8). In this update, particular emphasis has been given to noncoding RNAs and noncoding RNA-mediated regulation in addition to genomic regulatory motifs, which are emerging areas of vertebrate biology. FishMap Zv8 update also features a sequence mapping and analysis server. Consistent with its commitment to make the information freely available to the community, FishMap features options to share data between compatible resources in addition to making it amenable to programmatic access. FishMap Zv8 update is available at http://fishmap2.igib.res.in.",

author = "Deeksha Bhartiya and Jayant Maini and Meenakshi Sharma and Prateek Joshi and Laddha, {Saurabh V.} and Saakshi Jalali and Ashok Patowary and Ramya Purkanti and Mukesh Lalwani and Singh, {Angom Ramcharan} and Rajendra Chauhan and Naresh Singh and Anshu Bhardwaj and Vinod Scaria and Sridhar Sivasubbu",

year = "2010",

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doi = "10.1089/zeb.2009.0624",

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AU - Maini, Jayant

AU - Sharma, Meenakshi

AU - Joshi, Prateek

AU - Laddha, Saurabh V.

AU - Jalali, Saakshi

AU - Patowary, Ashok

AU - Purkanti, Ramya

AU - Lalwani, Mukesh

AU - Singh, Angom Ramcharan

AU - Chauhan, Rajendra

AU - Singh, Naresh

AU - Bhardwaj, Anshu

AU - Scaria, Vinod

AU - Sivasubbu, Sridhar

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AB - The advancements in genomics technologies and the amenability to large-scale computational analysis have contributed immensely to the understanding of the zebrafish genome, its organization, and its functional correlates. Translating genomics information into biological meaning would require integration and amenability of data and tools. FishMap is a community resource for genomic datasets on zebrafish created with a vision to provide relevant and readily available information to zebrafish researchers. The present update of FishMap has kept up with the availability of the latest zebrafish genome assembly (Zv8). In this update, particular emphasis has been given to noncoding RNAs and noncoding RNA-mediated regulation in addition to genomic regulatory motifs, which are emerging areas of vertebrate biology. FishMap Zv8 update also features a sequence mapping and analysis server. Consistent with its commitment to make the information freely available to the community, FishMap features options to share data between compatible resources in addition to making it amenable to programmatic access. FishMap Zv8 update is available at http://fishmap2.igib.res.in.

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SN - 1545-8547

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FishMap Zv8 update - A genomic regulatory map of zebrafish

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