flimkit-fiji-bridge: direct image and ROI exchange between FLIMKit and Fiji

Zhen Yuan Yeo; Alexander Hunt; Ahsan R Akram

doi:10.5281/ZENODO.21951612

flimkit-fiji-bridge: direct image and ROI exchange between FLIMKit and Fiji

Zhen Yuan Yeo
, Alexander Hunt
, Ahsan R Akram (Artist)

Research output: Non-textual form › Software

Abstract

First release of the FLIMKit to Fiji bridge. Direct localhost HTTP exchange between FLIMKit and Fiji. FLIMKit sends the fitted lifetime and photon-count intensity maps as float32 TIFF with their units, and ROIs move in both directions as GeoJSON. Co-registration is handled on the Fiji side. Requires FLIMKit 0.10.1 or newer for the plugin bindings, and a Fiji running Java 11 or newer.

Original language	Undefined/Unknown
Publisher	Zenodo
DOIs	https://doi.org/10.5281/ZENODO.21951612
Publication status	Published - 25 Aug 2026

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title = "flimkit-fiji-bridge: direct image and ROI exchange between FLIMKit and Fiji",

abstract = "First release of the FLIMKit to Fiji bridge. Direct localhost HTTP exchange between FLIMKit and Fiji. FLIMKit sends the fitted lifetime and photon-count intensity maps as float32 TIFF with their units, and ROIs move in both directions as GeoJSON. Co-registration is handled on the Fiji side. Requires FLIMKit 0.10.1 or newer for the plugin bindings, and a Fiji running Java 11 or newer.",

author = "Yeo, \{Zhen Yuan\} and Alexander Hunt and Akram, \{Ahsan R\}",

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AU - Yeo, Zhen Yuan

AU - Hunt, Alexander

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PY - 2026/8/25

Y1 - 2026/8/25

N2 - First release of the FLIMKit to Fiji bridge. Direct localhost HTTP exchange between FLIMKit and Fiji. FLIMKit sends the fitted lifetime and photon-count intensity maps as float32 TIFF with their units, and ROIs move in both directions as GeoJSON. Co-registration is handled on the Fiji side. Requires FLIMKit 0.10.1 or newer for the plugin bindings, and a Fiji running Java 11 or newer.

AB - First release of the FLIMKit to Fiji bridge. Direct localhost HTTP exchange between FLIMKit and Fiji. FLIMKit sends the fitted lifetime and photon-count intensity maps as float32 TIFF with their units, and ROIs move in both directions as GeoJSON. Co-registration is handled on the Fiji side. Requires FLIMKit 0.10.1 or newer for the plugin bindings, and a Fiji running Java 11 or newer.

UR - https://zenodo.org/doi/10.5281/zenodo.21951612

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DO - 10.5281/ZENODO.21951612

M3 - Software

PB - Zenodo

ER -

flimkit-fiji-bridge: direct image and ROI exchange between FLIMKit and Fiji

Abstract

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