Fourth Report on Chicken Genes and Chromosomes 2022

Jacqueline Smith; James M Alfieri; Nick Anthony; Peter Arensburger; Giridhar N Athrey; Jennifer Balacco; Adam Balic; Philippe Bardou; Paul Barela; Yves Bigot; Heath Blackmon; Pavel M Borodin; Rachel Carroll; Meya C Casono; Mathieu Charles; Hans Cheng; Maddie Chiodi; Lacey Cigan; Lyndon M Coghill; Richard Crooijmans; Neelabja Das; Sean Davey; Asya Davidian; Fabien Degalez; Jack M Dekkers; Martijn Derks; Abigail B Diack; Appolinaire Djikeng; Yvonne Drechsler; Alexander Dyomin; Olivier Fedrigo; Steven R Fiddaman; Giulio Formenti; Laurent A F Frantz; Janet E Fulton; Elena Gaginskaya; Svetlana Galkina; Rodrigo A Gallardo; Johannes Geibel; Almas Gheyas; Cyrill John P Godinez; Ashton Goodell; Jennifer A M Graves; Daren K Griffin; Bettina Haase; Jian-Lin Han; Olivier Hanotte; Lindsay J Henderson; Zhuo-Cheng Hou; Kerstin Howe; Lan Huynh; Evans Ilatsia; Erich Jarvis; Sarah M Johnson; Jim Kaufman; Terra Kelly; Steve Kemp; Colin Kern; Jacob H Keroack; Christophe Klopp; Sandrine Lagarrigue; Susan J Lamont; Margaret Lange; Anika Lanke; Denis M Larkin; Greger Larson; John King N Layos; Ophélie Lebrasseur; Lyubov P Malinovskaya; Rebecca J Martin; Maria Luisa Martin Cerezo; Andrew S Mason; Fiona M McCarthy; Michael J McGrew; Jacquelyn Mountcastle; Christine Kamidi Muhonja; William Muir; Kévin Muret; Terence Murphy; Ismael Ng'ang'a; Masahide Nishibori; Rebecca E O'Connor; Moses Ogugo; Ron Okimoto; Ochieng Ouko; Hardip R Patel; Francesco Perini; María Ines Pigozzi; Krista C Potter; Peter D Price; Christian Reimer; Edward S Rice; Nicolas Rocos; Thea F Rogers; Perot Saelao; Jens Schauer; Robert Schnabel; Valerie Schneider; Henner Simianer; Adrian Smith; Mark P Stevens; Kyle Stiers; Christian Keambou Tiambo; Michele Tixier-Boichard; Anna A Torgasheva; Alan Tracey; Clive A Tregaskes; Lonneke Vervelde; Ying Wang; Wesley C Warren; Paul D Waters; David Webb; Steffen Weigend; Anna Wolc; Alison E Wright; Dominic Wright; Zhou Wu; Masahito Yamagata; Chentao Yang; Zhong-Tao Yin; Michelle C Young; Guojie Zhang; Bingru Zhao; Huaijun Zhou

doi:10.1159/000529376

Fourth Report on Chicken Genes and Chromosomes 2022

Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M Borodin, Rachel Carroll, Meya C Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M Coghill, Richard CrooijmansNeelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M Dekkers, Martijn Derks, Abigail B Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven R Fiddaman, Giulio Formenti, Laurent A F Frantz, Janet E Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo A Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P Godinez, Ashton Goodell, Jennifer A M Graves, Daren K Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay J Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah M Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob H Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan J Lamont, Margaret Lange, Anika Lanke, Denis M Larkin, Greger Larson, John King N Layos, Ophélie Lebrasseur, Lyubov P Malinovskaya, Rebecca J Martin, Maria Luisa Martin Cerezo, Andrew S Mason, Fiona M McCarthy, Michael J McGrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng'ang'a, Masahide Nishibori, Rebecca E O'Connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip R Patel, Francesco Perini, María Ines Pigozzi, Krista C Potter, Peter D Price, Christian Reimer, Edward S Rice, Nicolas Rocos, Thea F Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark P Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna A Torgasheva, Alan Tracey, Clive A Tregaskes, Lonneke Vervelde, Ying Wang, Wesley C Warren, Paul D Waters, David Webb, Steffen Weigend, Anna Wolc, Alison E Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle C Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou

Research output: Contribution to journal › Review article › peer-review

Abstract

Original language	English
Pages (from-to)	405-528
Journal	Cytogenetic and Genome Research
Volume	162
Issue number	8-9
Early online date	30 Jan 2023
DOIs	https://doi.org/10.1159/000529376
Publication status	Published - 1 Jul 2023

Access to Document

10.1159/000529376

529376Final published version, 125 MBLicence: Creative Commons: Attribution (CC-BY)

6 Article

Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using CAGE sequencing
Salavati, M., Clark, R., Becker, D., Kühn, C., Plastow, G. S., Dupont, S., Moreira, G. C. M., Charlier, C. & Clark, E., Aug 2023, In: G3: Genes | Genomes | Genetics. 13, 8, p. 1-38 38 p., jkad108.
Research output: Contribution to journal › Article › peer-review

Open Access
File
600 alleles and 200 haplotypes identified for the chicken BF-BL region
Tregaskes, C. A., Martin, R. J., Huynh, L., Rocos, N. & Kaufman, J., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
File
Chicken Genomic Diversity consortium: large-scale genomics to unravel the origins and adaptations of chickens
Fiddaman, S. R., Klopp, C., Charles, M., Bardou, P., Lebrasseur, O., Derks, M. F. L., Schauer, J., Reimer, C., Geibel, J., Gheyas, A., Smith, A. L., Schnabel, R., Cerezo, M. L. M., Nishibori, M., Godinez, C. J. P., Layos, J. K. N., Alfieri, J. M., Blackmon, H., Athrey, G. N. & Larson, G. & 13 others, Ng’ang’a, I., Muir, W., Lange, M., Wright, D., Cheng, H. H., Simianer, H., Weigend, S., Warren, W., Crooijmans, R. P. M. A., Hanotte, O., Smith, J., Tixier-Boichard, M. & Frantz, L. A., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
File

Cite this

Smith, J., Alfieri, J. M., Anthony, N., Arensburger, P., Athrey, G. N., Balacco, J., Balic, A., Bardou, P., Barela, P., Bigot, Y., Blackmon, H., Borodin, P. M., Carroll, R., Casono, M. C., Charles, M., Cheng, H., Chiodi, M., Cigan, L., Coghill, L. M., ... Zhou, H. (2023). Fourth Report on Chicken Genes and Chromosomes 2022. Cytogenetic and Genome Research, 162(8-9), 405-528. https://doi.org/10.1159/000529376

@article{3ef65ddc1fc94a4ebd1830c687cba7b7,

title = "Fourth Report on Chicken Genes and Chromosomes 2022",

author = "Jacqueline Smith and Alfieri, {James M} and Nick Anthony and Peter Arensburger and Athrey, {Giridhar N} and Jennifer Balacco and Adam Balic and Philippe Bardou and Paul Barela and Yves Bigot and Heath Blackmon and Borodin, {Pavel M} and Rachel Carroll and Casono, {Meya C} and Mathieu Charles and Hans Cheng and Maddie Chiodi and Lacey Cigan and Coghill, {Lyndon M} and Richard Crooijmans and Neelabja Das and Sean Davey and Asya Davidian and Fabien Degalez and Dekkers, {Jack M} and Martijn Derks and Diack, {Abigail B} and Appolinaire Djikeng and Yvonne Drechsler and Alexander Dyomin and Olivier Fedrigo and Fiddaman, {Steven R} and Giulio Formenti and Frantz, {Laurent A F} and Fulton, {Janet E} and Elena Gaginskaya and Svetlana Galkina and Gallardo, {Rodrigo A} and Johannes Geibel and Almas Gheyas and Godinez, {Cyrill John P} and Ashton Goodell and Graves, {Jennifer A M} and Griffin, {Daren K} and Bettina Haase and Jian-Lin Han and Olivier Hanotte and Henderson, {Lindsay J} and Zhuo-Cheng Hou and Kerstin Howe and Lan Huynh and Evans Ilatsia and Erich Jarvis and Johnson, {Sarah M} and Jim Kaufman and Terra Kelly and Steve Kemp and Colin Kern and Keroack, {Jacob H} and Christophe Klopp and Sandrine Lagarrigue and Lamont, {Susan J} and Margaret Lange and Anika Lanke and Larkin, {Denis M} and Greger Larson and Layos, {John King N} and Oph{\'e}lie Lebrasseur and Malinovskaya, {Lyubov P} and Martin, {Rebecca J} and {Martin Cerezo}, {Maria Luisa} and Mason, {Andrew S} and McCarthy, {Fiona M} and McGrew, {Michael J} and Jacquelyn Mountcastle and Muhonja, {Christine Kamidi} and William Muir and K{\'e}vin Muret and Terence Murphy and Ismael Ng'ang'a and Masahide Nishibori and O'Connor, {Rebecca E} and Moses Ogugo and Ron Okimoto and Ochieng Ouko and Patel, {Hardip R} and Francesco Perini and Pigozzi, {Mar{\'i}a Ines} and Potter, {Krista C} and Price, {Peter D} and Christian Reimer and Rice, {Edward S} and Nicolas Rocos and Rogers, {Thea F} and Perot Saelao and Jens Schauer and Robert Schnabel and Valerie Schneider and Henner Simianer and Adrian Smith and Stevens, {Mark P} and Kyle Stiers and Tiambo, {Christian Keambou} and Michele Tixier-Boichard and Torgasheva, {Anna A} and Alan Tracey and Tregaskes, {Clive A} and Lonneke Vervelde and Ying Wang and Warren, {Wesley C} and Waters, {Paul D} and David Webb and Steffen Weigend and Anna Wolc and Wright, {Alison E} and Dominic Wright and Zhou Wu and Masahito Yamagata and Chentao Yang and Zhong-Tao Yin and Young, {Michelle C} and Guojie Zhang and Bingru Zhao and Huaijun Zhou",

note = "The Author(s). Published by S. Karger AG, Basel.",

year = "2023",

month = jul,

day = "1",

doi = "10.1159/000529376",

language = "English",

volume = "162",

pages = "405--528",

journal = "Cytogenetic and Genome Research",

issn = "1424-8581",

publisher = "S. Karger AG",

number = "8-9",

}

Smith, J, Alfieri, JM, Anthony, N, Arensburger, P, Athrey, GN, Balacco, J, Balic, A, Bardou, P, Barela, P, Bigot, Y, Blackmon, H, Borodin, PM, Carroll, R, Casono, MC, Charles, M, Cheng, H, Chiodi, M, Cigan, L, Coghill, LM, Crooijmans, R, Das, N, Davey, S, Davidian, A, Degalez, F, Dekkers, JM, Derks, M, Diack, AB , Djikeng, A, Drechsler, Y, Dyomin, A, Fedrigo, O, Fiddaman, SR, Formenti, G, Frantz, LAF, Fulton, JE, Gaginskaya, E, Galkina, S, Gallardo, RA, Geibel, J, Gheyas, A, Godinez, CJP, Goodell, A, Graves, JAM, Griffin, DK, Haase, B, Han, J-L, Hanotte, O, Henderson, LJ, Hou, Z-C, Howe, K, Huynh, L, Ilatsia, E, Jarvis, E, Johnson, SM, Kaufman, J, Kelly, T, Kemp, S, Kern, C, Keroack, JH, Klopp, C, Lagarrigue, S, Lamont, SJ, Lange, M, Lanke, A, Larkin, DM, Larson, G, Layos, JKN, Lebrasseur, O, Malinovskaya, LP, Martin, RJ, Martin Cerezo, ML, Mason, AS, McCarthy, FM, McGrew, MJ, Mountcastle, J, Muhonja, CK, Muir, W, Muret, K, Murphy, T, Ng'ang'a, I, Nishibori, M, O'Connor, RE, Ogugo, M, Okimoto, R, Ouko, O, Patel, HR, Perini, F, Pigozzi, MI, Potter, KC, Price, PD, Reimer, C, Rice, ES, Rocos, N, Rogers, TF, Saelao, P, Schauer, J, Schnabel, R, Schneider, V, Simianer, H, Smith, A, Stevens, MP, Stiers, K, Tiambo, CK, Tixier-Boichard, M, Torgasheva, AA, Tracey, A, Tregaskes, CA, Vervelde, L, Wang, Y, Warren, WC, Waters, PD, Webb, D, Weigend, S, Wolc, A, Wright, AE, Wright, D, Wu, Z, Yamagata, M, Yang, C, Yin, Z-T, Young, MC, Zhang, G, Zhao, B & Zhou, H 2023, 'Fourth Report on Chicken Genes and Chromosomes 2022', Cytogenetic and Genome Research, vol. 162, no. 8-9, pp. 405-528. https://doi.org/10.1159/000529376

TY - JOUR

T1 - Fourth Report on Chicken Genes and Chromosomes 2022

AU - Smith, Jacqueline

AU - Alfieri, James M

AU - Anthony, Nick

AU - Arensburger, Peter

AU - Athrey, Giridhar N

AU - Balacco, Jennifer

AU - Balic, Adam

AU - Bardou, Philippe

AU - Barela, Paul

AU - Bigot, Yves

AU - Blackmon, Heath

AU - Borodin, Pavel M

AU - Carroll, Rachel

AU - Casono, Meya C

AU - Charles, Mathieu

AU - Cheng, Hans

AU - Chiodi, Maddie

AU - Cigan, Lacey

AU - Coghill, Lyndon M

AU - Crooijmans, Richard

AU - Das, Neelabja

AU - Davey, Sean

AU - Davidian, Asya

AU - Degalez, Fabien

AU - Dekkers, Jack M

AU - Derks, Martijn

AU - Diack, Abigail B

AU - Djikeng, Appolinaire

AU - Drechsler, Yvonne

AU - Dyomin, Alexander

AU - Fedrigo, Olivier

AU - Fiddaman, Steven R

AU - Formenti, Giulio

AU - Frantz, Laurent A F

AU - Fulton, Janet E

AU - Gaginskaya, Elena

AU - Galkina, Svetlana

AU - Gallardo, Rodrigo A

AU - Geibel, Johannes

AU - Gheyas, Almas

AU - Godinez, Cyrill John P

AU - Goodell, Ashton

AU - Graves, Jennifer A M

AU - Griffin, Daren K

AU - Haase, Bettina

AU - Han, Jian-Lin

AU - Hanotte, Olivier

AU - Henderson, Lindsay J

AU - Hou, Zhuo-Cheng

AU - Howe, Kerstin

AU - Huynh, Lan

AU - Ilatsia, Evans

AU - Jarvis, Erich

AU - Johnson, Sarah M

AU - Kaufman, Jim

AU - Kelly, Terra

AU - Kemp, Steve

AU - Kern, Colin

AU - Keroack, Jacob H

AU - Klopp, Christophe

AU - Lagarrigue, Sandrine

AU - Lamont, Susan J

AU - Lange, Margaret

AU - Lanke, Anika

AU - Larkin, Denis M

AU - Larson, Greger

AU - Layos, John King N

AU - Lebrasseur, Ophélie

AU - Malinovskaya, Lyubov P

AU - Martin, Rebecca J

AU - Martin Cerezo, Maria Luisa

AU - Mason, Andrew S

AU - McCarthy, Fiona M

AU - McGrew, Michael J

AU - Mountcastle, Jacquelyn

AU - Muhonja, Christine Kamidi

AU - Muir, William

AU - Muret, Kévin

AU - Murphy, Terence

AU - Ng'ang'a, Ismael

AU - Nishibori, Masahide

AU - O'Connor, Rebecca E

AU - Ogugo, Moses

AU - Okimoto, Ron

AU - Ouko, Ochieng

AU - Patel, Hardip R

AU - Perini, Francesco

AU - Pigozzi, María Ines

AU - Potter, Krista C

AU - Price, Peter D

AU - Reimer, Christian

AU - Rice, Edward S

AU - Rocos, Nicolas

AU - Rogers, Thea F

AU - Saelao, Perot

AU - Schauer, Jens

AU - Schnabel, Robert

AU - Schneider, Valerie

AU - Simianer, Henner

AU - Smith, Adrian

AU - Stevens, Mark P

AU - Stiers, Kyle

AU - Tiambo, Christian Keambou

AU - Tixier-Boichard, Michele

AU - Torgasheva, Anna A

AU - Tracey, Alan

AU - Tregaskes, Clive A

AU - Vervelde, Lonneke

AU - Wang, Ying

AU - Warren, Wesley C

AU - Waters, Paul D

AU - Webb, David

AU - Weigend, Steffen

AU - Wolc, Anna

AU - Wright, Alison E

AU - Wright, Dominic

AU - Wu, Zhou

AU - Yamagata, Masahito

AU - Yang, Chentao

AU - Yin, Zhong-Tao

AU - Young, Michelle C

AU - Zhang, Guojie

AU - Zhao, Bingru

AU - Zhou, Huaijun

N1 - The Author(s). Published by S. Karger AG, Basel.

PY - 2023/7/1

Y1 - 2023/7/1

U2 - 10.1159/000529376

DO - 10.1159/000529376

M3 - Review article

C2 - 36716736

SN - 1424-8581

VL - 162

SP - 405

EP - 528

JO - Cytogenetic and Genome Research

JF - Cytogenetic and Genome Research

IS - 8-9

ER -

Fourth Report on Chicken Genes and Chromosomes 2022

Abstract

Access to Document

Research output

Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using CAGE sequencing

600 alleles and 200 haplotypes identified for the chicken BF-BL region

Chicken Genomic Diversity consortium: large-scale genomics to unravel the origins and adaptations of chickens

Cite this