Fourth Report on Chicken Genes and Chromosomes 2022

Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M Borodin, Rachel Carroll, Meya C Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M Coghill, Richard CrooijmansNeelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M Dekkers, Martijn Derks, Abigail B Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven R Fiddaman, Giulio Formenti, Laurent A F Frantz, Janet E Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo A Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P Godinez, Ashton Goodell, Jennifer A M Graves, Daren K Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay J Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah M Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob H Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan J Lamont, Margaret Lange, Anika Lanke, Denis M Larkin, Greger Larson, John King N Layos, Ophélie Lebrasseur, Lyubov P Malinovskaya, Rebecca J Martin, Maria Luisa Martin Cerezo, Andrew S Mason, Fiona M McCarthy, Michael J McGrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng'ang'a, Masahide Nishibori, Rebecca E O'Connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip R Patel, Francesco Perini, María Ines Pigozzi, Krista C Potter, Peter D Price, Christian Reimer, Edward S Rice, Nicolas Rocos, Thea F Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark P Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna A Torgasheva, Alan Tracey, Clive A Tregaskes, Lonneke Vervelde, Ying Wang, Wesley C Warren, Paul D Waters, David Webb, Steffen Weigend, Anna Wolc, Alison E Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle C Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou

Research output: Contribution to journal › Review article › peer-review

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2023
Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using CAGE sequencing
Salavati, M., Clark, R., Becker, D., Kühn, C., Plastow, G. S., Dupont, S., Moreira, G. C. M., Charlier, C. & Clark, E., Aug 2023, In: G3: Genes | Genomes | Genetics. 13, 8, p. 1-38 38 p., jkad108.
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600 alleles and 200 haplotypes identified for the chicken BF-BL region
Tregaskes, C. A., Martin, R. J., Huynh, L., Rocos, N. & Kaufman, J., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
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Chicken Genomic Diversity consortium: large-scale genomics to unravel the origins and adaptations of chickens
Fiddaman, S. R., Klopp, C., Charles, M., Bardou, P., Lebrasseur, O., Derks, M. F. L., Schauer, J., Reimer, C., Geibel, J., Gheyas, A., Smith, A. L., Schnabel, R., Cerezo, M. L. M., Nishibori, M., Godinez, C. J. P., Layos, J. K. N., Alfieri, J. M., Blackmon, H., Athrey, G. N. & Larson, G. & 13 others, Ng’ang’a, I., Muir, W., Lange, M., Wright, D., Cheng, H. H., Simianer, H., Weigend, S., Warren, W., Crooijmans, R. P. M. A., Hanotte, O., Smith, J., Tixier-Boichard, M. & Frantz, L. A., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
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Multiple chicken (Gallus gallus) genome references to advance genetic variation studies. Single haplotype chicken genome assemblies.
Warren, W., Fedrigo, O., Tracey, A., Mason, A. S., Formenti, G., Francesco, P., Wu, Z., Murphy, T., Schneider, V., Stiers, K., Rice, E. S., Coghill, L. M., Anthony, N., Okimoto, R., Carroll, R., Mountcastle, J., Balacco, J., Haase, B., Yang, C. & Zhang, G. & 5 others, Smith, J., Drechsler, Y., Cheng, H. H., Howe, K. & Jarvis, E. D., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, p. 405-528
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Open Access
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Recovering the ‘missing’ avian genes using multi-omics data
Zhong-Tao , Y., Smith, J. & Zhuo-Cheng , H., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
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The BF-BL and BG regions of the chicken B locus differ in genome dynamics
Kaufman, J., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, p. 405-528
Research output: Contribution to journal › Article › peer-review

Open Access
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Fourth Report on Chicken Genes and Chromosomes 2022

Research output

Search results

Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using CAGE sequencing

600 alleles and 200 haplotypes identified for the chicken BF-BL region

Chicken Genomic Diversity consortium: large-scale genomics to unravel the origins and adaptations of chickens

Multiple chicken (Gallus gallus) genome references to advance genetic variation studies. Single haplotype chicken genome assemblies.

Recovering the ‘missing’ avian genes using multi-omics data

The BF-BL and BG regions of the chicken B locus differ in genome dynamics