Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

Laurent Af Frantz; Joshua G Schraiber; Ole Madsen; Hendrik-Jan Megens; Mirte Bosse; Yogesh Paudel; Gono Semiadi; Erik Meijaard; Ning Li; Richard Pma Crooijmans; Alan L Archibald; Montgomery Slatkin; Lawrence B Schook; Greger Larson; Martien Am Groenen

doi:10.1186/gb-2013-14-9-r107

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

Laurent Af Frantz, Joshua G Schraiber, Ole Madsen, Hendrik-Jan Megens, Mirte Bosse, Yogesh Paudel, Gono Semiadi, Erik Meijaard, Ning Li, Richard Pma Crooijmans, Alan L Archibald, Montgomery Slatkin, Lawrence B Schook, Greger Larson, Martien Am Groenen

Royal (Dick) School of Veterinary Studies

Research output: Contribution to journal › Article › peer-review

Abstract / Description of output

Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.

Original language	English
Pages (from-to)	R107
Journal	Genome Biology
Volume	14
Issue number	9
DOIs	https://doi.org/10.1186/gb-2013-14-9-r107
Publication status	Published - 26 Sept 2013

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10.1186/gb-2013-14-9-r107

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
© 2013 Frantz et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Final published version, 713 KBLicence: Creative Commons: Attribution (CC-BY)

http://genomebiology.com/2013/14/9/R107/abstract

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Frantz, L. A., Schraiber, J. G., Madsen, O., Megens, H.-J., Bosse, M., Paudel, Y., Semiadi, G., Meijaard, E., Li, N., Crooijmans, R. P., Archibald, A. L., Slatkin, M., Schook, L. B., Larson, G., & Groenen, M. A. (2013). Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology, 14(9), R107. https://doi.org/10.1186/gb-2013-14-9-r107

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title = "Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus",

abstract = "Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.",

author = "Frantz, {Laurent Af} and Schraiber, {Joshua G} and Ole Madsen and Hendrik-Jan Megens and Mirte Bosse and Yogesh Paudel and Gono Semiadi and Erik Meijaard and Ning Li and Crooijmans, {Richard Pma} and Archibald, {Alan L} and Montgomery Slatkin and Schook, {Lawrence B} and Greger Larson and Groenen, {Martien Am}",

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Frantz, LA, Schraiber, JG, Madsen, O, Megens, H-J, Bosse, M, Paudel, Y, Semiadi, G, Meijaard, E, Li, N, Crooijmans, RP, Archibald, AL, Slatkin, M, Schook, LB, Larson, G & Groenen, MA 2013, 'Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus', Genome Biology, vol. 14, no. 9, pp. R107. https://doi.org/10.1186/gb-2013-14-9-r107

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T1 - Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

AU - Frantz, Laurent Af

AU - Schraiber, Joshua G

AU - Madsen, Ole

AU - Megens, Hendrik-Jan

AU - Bosse, Mirte

AU - Paudel, Yogesh

AU - Semiadi, Gono

AU - Meijaard, Erik

AU - Li, Ning

AU - Crooijmans, Richard Pma

AU - Archibald, Alan L

AU - Slatkin, Montgomery

AU - Schook, Lawrence B

AU - Larson, Greger

AU - Groenen, Martien Am

N1 - BBSRC Institute Strategic Grants.

PY - 2013/9/26

Y1 - 2013/9/26

N2 - Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.

AB - Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.

U2 - 10.1186/gb-2013-14-9-r107

DO - 10.1186/gb-2013-14-9-r107

M3 - Article

C2 - 24070215

SN - 1465-6906

VL - 14

SP - R107

JO - Genome Biology

JF - Genome Biology

IS - 9

ER -

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

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