Isolation and Phenotyping of Adult Mouse Microglial Cells

Kathleen Grabert, Barry W McColl

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review


Microglia are the resident macrophages of the central nervous system parenchyma and fulfill crucial roles in brain development, homeostasis, and inflammation. The isolation of a pure microglia population from brain tissue enables the examination of microglial phenotypes without the interference of other cell populations. Microglial extractions from the neonatal brain have been described in various protocols, yet the more established and complex adult mouse brain poses a greater challenge. Here we describe a refined protocol including enzymatic and mechanical dissociation of adult mouse brain tissue and removal of myelin by Percoll density gradient. Microglial cells were subsequently extracted by an immunomagnetic approach. This isolation procedure enables the use of functionally viable cells for various applications such as cell culture, flow cytometry, functional assays including bacteria- or bead-based phagocytosis, stimulation assays, and transcriptome profiling techniques such as qRT-PCR and microarray/RNA sequencing.

Original languageEnglish
Title of host publicationMacrophages: Methods and Protocols, Methods in Molecular Biology, vol. 1784,
Number of pages10
ISBN (Print)978-1-4939-7836-6
Publication statusPublished - 15 May 2018


  • Journal Article


Dive into the research topics of 'Isolation and Phenotyping of Adult Mouse Microglial Cells'. Together they form a unique fingerprint.

Cite this