MotifSuite: workflow for probabilistic motif detection and assessment

Marleen Claeys, Valerie Storms, Hong Sun, Tom Michoel, Kathleen Marchal

Research output: Contribution to journalArticlepeer-review

Abstract

MOTIVATION: Probabilistic motif detection requires a multi-step approach going from the actual de novo regulatory motif finding up to a tedious assessment of the predicted motifs. MotifSuite, a user friendly web interface streamlines this analysis flow. Its core consists of two post processing procedures that allow prioritizing the motif detection output. The tools offered by MotifSuite are built around the well established motif detection tool MotifSampler, but can also be used in combination with any other probabilistic motif detection tool. Elaborate guidelines on each of its applications have been provided. AVAILABILITY: http://homes.esat.kuleuven.be/~bioi_marchal/MotifSuite/Index.htm CONTACT: kamar@psb.ugent.be.
Original languageEnglish
Pages (from-to)1931-1932
Number of pages2
JournalBioinformatics
Volume28
Issue number14
Early online date15 May 2012
DOIs
Publication statusPublished - 2012

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