Projects per year
Abstract
Objective: Snapshot imaging has several advantages in automated gel electrophoresis compared with the finish-line method in capillary electrophoresis; this comes at the expense of resolution. A novel signal processing algorithm is proposed enabling a multi-snapshot imaging (MSI) modality whose objective is to substantially improve resolution. MSI takes multiple-captures in time as macromolecules are electrophoresed. Peaks from latter snapshots have high resolution but low signal-to-noise ratio (SNR), while earlier snapshots have low resolution but high SNR. Methods: Signals at different capture-times are related by a scale-in-separation, shift-in-separation, and amplitude gain. The proposed method realigns the multiple captures using least-squares and fuses them. The algorithm accounts for the partial waveforms observed as the chromatic peaks exit the sensor’s field-of-view. Results: MSI improves resolution by approximately 10% on average per minute of additional electrophoresis. Conclusions: Comprehensive analysis of the resolution are quantified on several datasets demonstrate the effectiveness of MSI. Significance: MSI can double the resolution compared with traditional snapshot imaging over a typical set of captures.
Original language | English |
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Pages (from-to) | 119-129 |
Journal | IEEE Transactions on Biomedical Engineering |
Volume | 66 |
Issue number | 1 |
DOIs | |
Publication status | Published - 12 Apr 2018 |
Keywords / Materials (for Non-textual outputs)
- image resolution
- imaging
- signal resolution
- standards
- shape
- DNA
- Signal processing algorithms
- signal processing and modelling
- chromatography
- snapshot imaging
- finish-line
- parameter estimation
- Fusion
Fingerprint
Dive into the research topics of 'Multi-Snapshot Imaging for Chromatographic Peak Analysis'. Together they form a unique fingerprint.Projects
- 1 Finished
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Novel Signal Processing Algorithms for Automated Electrophoresis Analysis
Hopgood, J. (Principal Investigator)
1/09/15 → 31/08/16
Project: Research
Research output
- 2 Conference contribution
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Improved Resolution of Chromatographic Peak Analysis using Multi-Snapshot Imaging
Hopgood, J., 28 Aug 2016, European Signal Processing Conference (EUSIPCO).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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A New Approach for Multi-Dimensional Signal Processing and Modelling for Signals From Gel Electrophoresis
Yousif, E. H. G., Hopgood, J., Thompson, J. & Davies, M., 28 May 2016, European Signal Processing Conference (EUSIPCO).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Datasets
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Multi-snapshot Gel Electrophoresis Traces
Connelly, M. (Creator), McHoull, B. (Creator), Troy, D. (Creator) & Hopgood, J. (Depositor), Edinburgh DataShare, 26 Apr 2018
DOI: 10.7488/ds/2342
Dataset
Profiles
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James Hopgood
- School of Engineering - Personal Chair of Statistical Signal Processing
- Acoustics and Audio Group
Person: Academic: Research Active