nf-core/isoseq: Simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing

Research output: Contribution to journalArticlepeer-review

Abstract / Description of output

Motivation: Iso-Seq RNA long-read sequencing enables the identification of full-length transcripts and isoforms, removing the need for complex analysis such as transcriptome assembly. However, the raw sequencing data need to be processed in a series of steps before annotation is complete. Here, we present nf-core/isoseq, a pipeline for automatic read processing and genome annotation. Following nf-core guidelines, the pipeline has few dependencies and can be run on any of platforms.

Original languageEnglish
Article number24323
Pages (from-to)1-2
Number of pages2
Issue number5
Early online date24 Mar 2023
Publication statusPublished - 4 May 2023

Keywords / Materials (for Non-textual outputs)

  • Alternative Splicing
  • Genome
  • Molecular Sequence Annotation
  • Protein Isoforms/genetics
  • Sequence Analysis, RNA
  • Transcriptome


Dive into the research topics of 'nf-core/isoseq: Simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing'. Together they form a unique fingerprint.

Cite this