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Abstract / Description of output
Motivation: Iso-Seq RNA long-read sequencing enables the identification of full-length transcripts and isoforms, removing the need for complex analysis such as transcriptome assembly. However, the raw sequencing data need to be processed in a series of steps before annotation is complete. Here, we present nf-core/isoseq, a pipeline for automatic read processing and genome annotation. Following nf-core guidelines, the pipeline has few dependencies and can be run on any of platforms.
Original language | English |
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Article number | 24323 |
Pages (from-to) | 1-2 |
Number of pages | 2 |
Journal | Bioinformatics |
Volume | 39 |
Issue number | 5 |
Early online date | 24 Mar 2023 |
DOIs | |
Publication status | Published - 4 May 2023 |
Keywords / Materials (for Non-textual outputs)
- Alternative Splicing
- Genome
- Molecular Sequence Annotation
- Protein Isoforms/genetics
- Sequence Analysis, RNA
- Transcriptome
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