Projects per year
Abstract / Description of output
Circadian biology is a major area of research in many species. One of the key objectives of data analysis in this field is to quantify the rhythmic properties of the experimental data. Standalone software such as our earlier Biological Rhythm Analysis Software Suite (BRASS) is widely used. Different parts of the community have settled on different software packages, sometimes for historical reasons. Recent advances in experimental techniques and available computing power have led to an almost exponential growth in the size of the experimental data sets being generated. This, together with the trend towards multi-national, multi-disciplinary projects and public data dissemination, has led to a requirement to be able to store and share these large data sets. BioDare (Biological Data repository) is an online system which encompasses data storage, data sharing and processing and analysis. This chapter outlines the description of an experiment for BioDare, how to upload and share the experiment and associated data, and how to process and analyse the data. Functions of BRASS that are not supported in BioDare are also briefly summarised.
Original language | English |
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Title of host publication | Plant Circadian Networks |
Subtitle of host publication | Methods and Protocols |
Editors | Dorothee Staiger |
Publisher | Springer |
Pages | 13-44 |
Number of pages | 32 |
Volume | 1158 |
ISBN (Electronic) | 978-1-4939-0700-7 |
ISBN (Print) | 978-1-4939-0699-4 |
DOIs | |
Publication status | E-pub ahead of print - 8 Apr 2014 |
Publication series
Name | Methods in Molecular Biology |
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Publisher | Springer New York |
Volume | 1158 |
ISSN (Print) | 1064-3745 |
Keywords / Materials (for Non-textual outputs)
- circadian clocks
- time series analysis
- data management
- biological rhythms
Fingerprint
Dive into the research topics of 'Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure'. Together they form a unique fingerprint.Projects
- 3 Finished
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Regulation of biological signalling by temperature (ROBUST)
Halliday, K., Gilmore, S. & Millar, A.
14/04/08 → 13/10/13
Project: Research
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SynthSys; formerly CSBE: Centre for Systems Biology at Edinburgh
Millar, A., Beggs, J., Ghazal, P., Goryanin, I., Hillston, J., Plotkin, G., Tollervey, D., Walton, A. & Robertson, K.
8/01/07 → 31/12/12
Project: Research
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Strengths and limitations of period estimation methods for circadian data
Zielinski, T., Moore, A. M., Troup, E., Halliday, K. J. & Millar, A. J., 2014, In: PLoS ONE. 9, 5, e96462.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
The Biodare Data Repository
Zielinski, T., Moore, A., Troup, E., Beaton, M., Adams, R., Halliday, K. & Millar, A., 2011Research output: Other contribution
Activities
- 2 Participation in workshop, seminar, course
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UK Circadian Clock Club
Andrew Millar (Organiser)
13 Sept 2012Activity: Participating in or organising an event types › Participation in workshop, seminar, course
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UK Circadian Clock Club
Andrew Millar (Invited speaker)
30 Apr 2012Activity: Participating in or organising an event types › Participation in workshop, seminar, course