Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

Tomasz Zieliński; Johnny Hay; Andrew J Millar

doi:10.1007/978-1-0716-1912-4_19

Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

Tomasz Zieliński, Johnny Hay, Andrew J Millar^*

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Abstract / Description of output

One of the key objectives of data analysis in circadian research is to quantify the rhythmic properties of the experimental data. BioDare2 is a free, online service which provides fast timeseries analysis, attractive visualizations, and data sharing. This chapter outlines the description of an experiment for BioDare2 and how to upload and analyze the numerical timeseries data.

Original language	English
Title of host publication	Plant Circadian Networks
Subtitle of host publication	Methods and Protocols
Publisher	Springer
Pages	15-32
Number of pages	18
Volume	2398
ISBN (Electronic)	978-1-0716-1912-4
ISBN (Print)	978-1-0716-1911-7
DOIs	https://doi.org/10.1007/978-1-0716-1912-4_19
Publication status	E-pub ahead of print - 22 Oct 2021

Publication series

Name	Methods in molecular biology (Clifton, N.J.)
Publisher	Humana Press
ISSN (Print)	1064-3745

Keywords / Materials (for Non-textual outputs)

circadian rhythms
biological clocks
research data management
period analysis
rhythmicity
data repository
data sharing
metadata

Access to Document

10.1007/978-1-0716-1912-4_19Licence: Creative Commons: Attribution (CC-BY)

2022_Book_PlantCircadianNetworksFinal published version, 6.52 MBLicence: Creative Commons: Attribution (CC-BY)

Cite this

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title = "Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource",

abstract = "One of the key objectives of data analysis in circadian research is to quantify the rhythmic properties of the experimental data. BioDare2 is a free, online service which provides fast timeseries analysis, attractive visualizations, and data sharing. This chapter outlines the description of an experiment for BioDare2 and how to upload and analyze the numerical timeseries data.",

keywords = "circadian rhythms, biological clocks, research data management, period analysis, rhythmicity, data repository, data sharing, metadata",

author = "Tomasz Zieli{\'n}ski and Johnny Hay and Millar, {Andrew J}",

year = "2021",

month = oct,

day = "22",

doi = "10.1007/978-1-0716-1912-4_19",

language = "English",

isbn = "978-1-0716-1911-7",

volume = "2398",

series = "Methods in molecular biology (Clifton, N.J.)",

publisher = "Springer",

pages = "15--32",

booktitle = "Plant Circadian Networks",

}

Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource. / Zieliński, Tomasz; Hay, Johnny ; Millar, Andrew J.
Plant Circadian Networks: Methods and Protocols. Vol. 2398 Springer, 2021. p. 15-32 (Methods in molecular biology (Clifton, N.J.)).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

TY - CHAP

T1 - Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

AU - Zieliński, Tomasz

AU - Hay, Johnny

AU - Millar, Andrew J

PY - 2021/10/22

Y1 - 2021/10/22

N2 - One of the key objectives of data analysis in circadian research is to quantify the rhythmic properties of the experimental data. BioDare2 is a free, online service which provides fast timeseries analysis, attractive visualizations, and data sharing. This chapter outlines the description of an experiment for BioDare2 and how to upload and analyze the numerical timeseries data.

AB - One of the key objectives of data analysis in circadian research is to quantify the rhythmic properties of the experimental data. BioDare2 is a free, online service which provides fast timeseries analysis, attractive visualizations, and data sharing. This chapter outlines the description of an experiment for BioDare2 and how to upload and analyze the numerical timeseries data.

KW - circadian rhythms

KW - biological clocks

KW - research data management

KW - period analysis

KW - rhythmicity

KW - data repository

KW - data sharing

KW - metadata

UR - https://doi.org/10.1007/978-1-0716-1912-4_2

U2 - 10.1007/978-1-0716-1912-4_19

DO - 10.1007/978-1-0716-1912-4_19

M3 - Chapter (peer-reviewed)

C2 - 34674164

SN - 978-1-0716-1911-7

VL - 2398

T3 - Methods in molecular biology (Clifton, N.J.)

SP - 15

EP - 32

BT - Plant Circadian Networks

PB - Springer

ER -

Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

Abstract / Description of output

Publication series

Keywords / Materials (for Non-textual outputs)

Access to Document

Other files and links

Fingerprint

SynthSys-Mammalian: Edinburgh Mammalian Synthetic Biology Research Centre

SynthSys; formerly CSBE: Centre for Systems Biology at Edinburgh

Cite this

Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

Abstract / Description of output

Publication series

Keywords / Materials (for Non-textual outputs)

Access to Document

Other files and links

Fingerprint

Projects

SynthSys-Mammalian: Edinburgh Mammalian Synthetic Biology Research Centre

SynthSys; formerly CSBE: Centre for Systems Biology at Edinburgh

Cite this