Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

Eilidh Troup; Ivan Clark; Peter Swain; Andrew Millar; Tomasz Zielinski

Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

Eilidh Troup, Ivan Clark, Peter Swain, Andrew Millar, Tomasz Zielinski

Research output: Book/Report › Other report

Abstract

The project evaluated two existing data management systems for a small set of users, who represent diverse needs within the SynthSys Centre, in order to inform wider adoption for biological research.

Original language	English
Publisher	University of Edinburgh
Number of pages	22
Publication status	Published - 30 Oct 2015

Keywords / Materials (for Non-textual outputs)

Systems Biology
Data management
Databases
Computational Biology
Saccharomyces cerevisiae

Access to Document

SynthSys DM Report 1 Final
Licensed under Creative Commons Attribution License version 4.0 (CC-BY-4.0). The full text of the license is available at http://creativecommons.org/licenses/by/4.0/
Accepted author manuscript, 1.4 MBLicence: Creative Commons: Attribution (CC-BY)

https://www.era.lib.ed.ac.uk/handle/1842/12236

3 Finished

Experimental methods and modelling for multiscale biology
Millar, A. (Principal Investigator)
BBSRC
24/07/15 → 23/12/15
Project: Research
SynthSys-Mammalian: Edinburgh Mammalian Synthetic Biology Research Centre
Rosser, S. (Principal Investigator), Bird, A. (Co-investigator), Cai, Y. (Co-investigator), Earnshaw, B. (Co-investigator), Millar, A. (Co-investigator), Molina, N. (Co-investigator), Pilizota, T. (Co-investigator), Swain, P. (Co-investigator) & Waites, W. (Researcher)
BBSRC
14/11/14 → 31/03/22
Project: Research
TiMet: Linking the clock to metabolism
Millar, A. (Principal Investigator)
EU government bodies
1/03/10 → 28/02/15
Project: Research

1 Other report

Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report
Troup, E., Tomlinson, K., D'Mellow, K., Richards, O., Millar, A. & Zielinski, T., 11 Mar 2016, University of Edinburgh. 13 p.
Research output: Book/Report › Other report

Open Access
File

1 Participation in conference
1 Participation in workshop, seminar, course
1 Contribution to the work of national or international committees and working groups
1 Oral presentation

Talk and demo at GARNet meeting: Being more Open by Being more Productive: shared infrastructure with domain-specific tools
Millar, A. (Speaker), Zielinski, T. (Contributor), Troup, E. (Contributor) & Hume, A. (Contributor)
18 Sept 2018
Activity: Academic talk or presentation types › Oral presentation
FACCE-JPI workshop on Big Data
Millar, A. (Invited speaker)
22 Nov 2017
Activity: Participating in or organising an event types › Participation in workshop, seminar, course
Repository Fringe 2017
Millar, A. (Keynote/plenary speaker)
4 Aug 2017
Activity: Participating in or organising an event types › Participation in conference

File

Cite this

@book{26abac823e6d49d0a135cc52054d8439,

title = "Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.",

abstract = "The project evaluated two existing data management systems for a small set of users, who represent diverse needs within the SynthSys Centre, in order to inform wider adoption for biological research.",

keywords = "Systems Biology, Data management, Databases, Computational Biology, Saccharomyces cerevisiae",

author = "Eilidh Troup and Ivan Clark and Peter Swain and Andrew Millar and Tomasz Zielinski",

year = "2015",

month = oct,

day = "30",

language = "English",

publisher = "University of Edinburgh",

address = "United Kingdom",

}

TY - BOOK

T1 - Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

AU - Troup, Eilidh

AU - Clark, Ivan

AU - Swain, Peter

AU - Millar, Andrew

AU - Zielinski, Tomasz

PY - 2015/10/30

Y1 - 2015/10/30

N2 - The project evaluated two existing data management systems for a small set of users, who represent diverse needs within the SynthSys Centre, in order to inform wider adoption for biological research.

AB - The project evaluated two existing data management systems for a small set of users, who represent diverse needs within the SynthSys Centre, in order to inform wider adoption for biological research.

KW - Systems Biology

KW - Data management

KW - Databases

KW - Computational Biology

KW - Saccharomyces cerevisiae

M3 - Other report

BT - Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

PB - University of Edinburgh

ER -

Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

Abstract

Keywords / Materials (for Non-textual outputs)

Access to Document

Fingerprint

Projects

Experimental methods and modelling for multiscale biology

SynthSys-Mammalian: Edinburgh Mammalian Synthetic Biology Research Centre

TiMet: Linking the clock to metabolism

Research output

Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report

Activities

Talk and demo at GARNet meeting: Being more Open by Being more Productive: shared infrastructure with domain-specific tools

FACCE-JPI workshop on Big Data

Repository Fringe 2017

Cite this