SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Filip Bielejec, Andrew Rambaut, Marc A. Suchard, Philippe Lemey

Research output: Contribution to journalArticlepeer-review

Abstract

SPREAD is a user-friendly, cross-platform application to analyze and visualize Bayesian phylogeographic reconstructions incorporating spatial-temporal diffusion. The software maps phylogenies annotated with both discrete and continuous spatial information and can export high-dimensional posterior summaries to keyhole markup language (KML) for animation of the spatial diffusion through time in virtual globe software. In addition, SPREAD implements Bayes factor calculation to evaluate the support for hypotheses of historical diffusion among pairs of discrete locations based on Bayesian stochastic search variable selection estimates. SPREAD takes advantage of multicore architectures to process large joint posterior distributions of phylogenies and their spatial diffusion and produces visualizations as compelling and interpretable statistical summaries for the different spatial projections.

Original languageEnglish
Pages (from-to)2910-2912
Number of pages3
JournalBioinformatics
Volume27
Issue number20
DOIs
Publication statusPublished - 15 Oct 2011

Keywords

  • PHYLOGEOGRAPHY

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