SPRINT v1.0.5 Software Release: SPRINT 1.0.5 - November 2013

Eilidh Troup (Developer), Thorsten Forster (Other), Terence Sloan (Other), Peter Ghazal (Other), Luis Cebamanos (Other)

Research output: Non-textual formSoftware

Abstract


This update:
- Adds pstringdistmatrix(), which computes (in this version) the Hamming distance between any strings (e.g. nucleotide bases, Next Gen Sequencing short reads).
- Makes SPRINT compliant with MPI3 (and the latest version of the mpich package)
- Provides simplified installation instructions
- Other bug fixes and updates (see User Guide)
- NOTE: This version is currently not compatible with R version 3 and higher, as we have yet to test this fully.
SPRINT version 1.0.5 is not available from CRAN or R-Forge at this time, as package submission guidelines have changed with the newly released R 3.0.x.
Original languageEnglish
Place of PublicationEdinburgh
Media of outputOnline
Publication statusPublished - Nov 2013

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