sticcs

Simon H. Martin

sticcs

School of Biological Sciences

Research output: Non-textual form › Software

Abstract

sticcs is a method for inferring the series of genealogies along the genome, also called a tree sequence. Unlike some other methods, sticcs does not require phased haplotypes, and it can work on any ploidy level.

The input for sticcs is polarised genotype data. This means you need to know the ancestral allele at each site, or you need an appropriate outgroup(s) to allow inference of the derived allele.

A publication is in preparation, but you can check out the How it works section below to learn about the apporach.

Original language	English
Publisher	GitHub
Media of output	Code
Publication status	Published - 28 Jul 2025

Access to Document

https://github.com/simonhmartin/sticcs/blob/main/README.mdLicence: Other

A model-free method for genealogical inference without phasing and its application for topology weighting
Martin, S. H., 8 Sept 2025, (E-pub ahead of print) In: Genetics. p. iyaf181 32 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File

Scripts for tests of sticcs and twisst2 sticcstack
Martin, S. H. (Creator), GitHub, 21 Jul 2025
https://github.com/simonhmartin/testing-sticcs-twisst2
Dataset

Cite this

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title = "sticcs",

abstract = "sticcs is a method for inferring the series of genealogies along the genome, also called a tree sequence. Unlike some other methods, sticcs does not require phased haplotypes, and it can work on any ploidy level. The input for sticcs is polarised genotype data. This means you need to know the ancestral allele at each site, or you need an appropriate outgroup(s) to allow inference of the derived allele. A publication is in preparation, but you can check out the How it works section below to learn about the apporach.",

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N2 - sticcs is a method for inferring the series of genealogies along the genome, also called a tree sequence. Unlike some other methods, sticcs does not require phased haplotypes, and it can work on any ploidy level. The input for sticcs is polarised genotype data. This means you need to know the ancestral allele at each site, or you need an appropriate outgroup(s) to allow inference of the derived allele. A publication is in preparation, but you can check out the How it works section below to learn about the apporach.

AB - sticcs is a method for inferring the series of genealogies along the genome, also called a tree sequence. Unlike some other methods, sticcs does not require phased haplotypes, and it can work on any ploidy level. The input for sticcs is polarised genotype data. This means you need to know the ancestral allele at each site, or you need an appropriate outgroup(s) to allow inference of the derived allele. A publication is in preparation, but you can check out the How it works section below to learn about the apporach.

M3 - Software

PB - GitHub

ER -

sticcs

Abstract

Access to Document

Fingerprint

Research output

A model-free method for genealogical inference without phasing and its application for topology weighting

Datasets

Scripts for tests of sticcs and twisst2 sticcstack

Cite this