The BioMart interface to the eMouseAtlas gene expression database EMAGE

Peter Stevenson, Lorna Richardson, Shanmugasundaram Venkataraman, Yiya Yang, Richard Baldock

Research output: Contribution to journalArticlepeer-review

Abstract / Description of output

Here, we describe the BioMart interface to the eMouseAtlas gene expression database EMAGE. EMAGE is a spatiotemporal database of in situ gene expression patterns in the developing mouse embryo. BioMart provides a generic web query interface and programmable access using web services. The BioMart interface extends access to EMAGE via a powerful method of structuring complex queries and one with which users may already be familiar with from other BioMart implementations. The interface is structured into several data sets providing the user with comprehensive query access to the EMAGE data. The federated nature of BioMart allows scope for integration and cross querying of EMAGE with other similar BioMarts.
Original languageEnglish
Pages (from-to)bar029
JournalDatabase: The Journal of Biological Databases and Curation
Volume2011
DOIs
Publication statusPublished - 2011

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