The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)

Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; Tree of Life Core Informatics collective, Darwin Tree of Life Consortium

doi:10.12688/wellcomeopenres.17289.1

The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)

Darwin Tree of Life Barcoding collective
, Wellcome Sanger Institute Tree of Life programme
, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium

School of Biological Sciences

Research output: Contribution to journal › Article › peer-review

Abstract

We present a genome assembly from an individual male Lycaena phlaeas (the small copper; Arthropoda; Insecta; Lepidoptera; Lycaenidae). The genome sequence is 420 megabases in span. The whole of the assembly is scaffolded into 24 chromosomal pseudomolecules, with the Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,147 protein coding genes.

Original language	English
Article number	294
Number of pages	14
Journal	Wellcome Open Research
Volume	6
Early online date	3 Nov 2021
DOIs	https://doi.org/10.12688/wellcomeopenres.17289.1
Publication status	E-pub ahead of print - 3 Nov 2021

Keywords / Materials (for Non-textual outputs)

Lycaena phlaeas
small copper
genome sequence
chromosomal

Access to Document

10.12688/wellcomeopenres.17289.1Licence: Creative Commons: Attribution (CC-BY)

VilaEtalWOR2021TheGenomeSquenceOfTheSmallCopperFinal published version, 3.01 MBLicence: Creative Commons: Attribution (CC-BY)

Cite this

Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium (2021). The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760). Wellcome Open Research, 6, Article 294. Advance online publication. https://doi.org/10.12688/wellcomeopenres.17289.1

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title = "The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)",

abstract = "We present a genome assembly from an individual male Lycaena phlaeas (the small copper; Arthropoda; Insecta; Lepidoptera; Lycaenidae). The genome sequence is 420 megabases in span. The whole of the assembly is scaffolded into 24 chromosomal pseudomolecules, with the Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,147 protein coding genes.",

keywords = "Lycaena phlaeas, small copper, genome sequence, chromosomal",

author = "\{Darwin Tree of Life Barcoding collective\} and \{Wellcome Sanger Institute Tree of Life programme\} and \{Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective\} and \{Tree of Life Core Informatics collective, Darwin Tree of Life Consortium\} and Konrad Lohse and Laetsch, \{Dominik R.\} and Roger Vila",

year = "2021",

month = nov,

day = "3",

doi = "10.12688/wellcomeopenres.17289.1",

language = "English",

volume = "6",

journal = "Wellcome Open Research",

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Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium 2021, 'The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)', Wellcome Open Research, vol. 6, 294. https://doi.org/10.12688/wellcomeopenres.17289.1

The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760). / Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective et al.
In: Wellcome Open Research, Vol. 6, 294, 03.11.2021.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)

AU - Darwin Tree of Life Barcoding collective

AU - Wellcome Sanger Institute Tree of Life programme

AU - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective

AU - Tree of Life Core Informatics collective, Darwin Tree of Life Consortium

AU - Lohse, Konrad

AU - Laetsch, Dominik R.

AU - Vila, Roger

PY - 2021/11/3

Y1 - 2021/11/3

N2 - We present a genome assembly from an individual male Lycaena phlaeas (the small copper; Arthropoda; Insecta; Lepidoptera; Lycaenidae). The genome sequence is 420 megabases in span. The whole of the assembly is scaffolded into 24 chromosomal pseudomolecules, with the Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,147 protein coding genes.

AB - We present a genome assembly from an individual male Lycaena phlaeas (the small copper; Arthropoda; Insecta; Lepidoptera; Lycaenidae). The genome sequence is 420 megabases in span. The whole of the assembly is scaffolded into 24 chromosomal pseudomolecules, with the Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,147 protein coding genes.

KW - Lycaena phlaeas

KW - small copper

KW - genome sequence

KW - chromosomal

UR - https://identifiers.org/ena.embl/PRJEB43533

U2 - 10.12688/wellcomeopenres.17289.1

DO - 10.12688/wellcomeopenres.17289.1

M3 - Article

SN - 2398-502X

VL - 6

JO - Wellcome Open Research

JF - Wellcome Open Research

M1 - 294

ER -

Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760). Wellcome Open Research. 2021 Nov 3;6:294. Epub 2021 Nov 3. doi: 10.12688/wellcomeopenres.17289.1

The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)

Abstract

Keywords / Materials (for Non-textual outputs)

Access to Document

Other files and links

Fingerprint

Darwin Tree of Life

Modelling the genomic landscapes of selection and speciation

Using genomes to dissect the speciation process - a comparative approach

Cite this

The genome sequence of the small copper, Lycaena phlaeas (Linnaeus, 1760)

Abstract

Keywords / Materials (for Non-textual outputs)

Access to Document

Other files and links

Fingerprint

Projects

Darwin Tree of Life

Modelling the genomic landscapes of selection and speciation

Using genomes to dissect the speciation process - a comparative approach

Cite this