Toward a quantitative understanding of viral phylogeography

Nuno Rodrigues Faria, Marc A Suchard, Andrew Rambaut, Philippe Lemey

Research output: Contribution to journalArticlepeer-review


Phylogeographic approaches help uncover the imprint that spatial epidemiological processes leave in the genomes of fast evolving viruses. Recent Bayesian inference methods that consider phylogenetic diffusion of discretely and continuously distributed traits offer a unique opportunity to explore genotypic and phenotypic evolution in greater detail. To provide a taste of the recent advances in viral diffusion approaches, we highlight key findings arising at the intrahost, local and global epidemiological scales. We also outline future areas of research and discuss how these may contribute to a quantitative understanding of the phylodynamics of RNA viruses.
Original languageEnglish
Pages (from-to)423-9
Number of pages7
JournalCurrent Opinion in Virology
Issue number5
Publication statusPublished - 2011


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