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viRome: an R package for the visualization and analysis of viral small RNA sequence datasets

Mick Watson, Esther Schnettler, Alain Kohl

Research output: Non-textual form › Software

Abstract

SUMMARY: RNA interference (RNAi) is known to play an important part in defense against viruses in a range of species. Second-generation sequencing technologies allow us to assay these systems and the small RNAs that play a key role with unprecedented depth. However, scientists need access to tools which can condense, analyse and display the resulting data. Here we present viRome, a package for R that takes aligned sequence data and produces a range of essential plots and reports.Availability and implementation: viRome is released under the BSD license as a package for R available for both Windows and Linux http://virome.sf.net CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Additional information and a tutorial is available on the ARK-Genomics website: http://www.ark-genomics.org/bioinformatics/virome.
Original languageEnglish
Publication statusPublished - 24 May 2013

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  • Ark Genomics

    Watson, M. (Principal Investigator), Archibald, A. (Co-investigator) & Burt, D. (Co-investigator)

    Biotechnology and Biological Sciences Research Council

    1/04/12 → 31/03/17

    Project: Research

  • ISP4 Pathogenesis and resistance in viral diseases of livestock

    Dutia, B. (Principal Investigator), Archibald, A. (Co-investigator), Beard, P. (Co-investigator), Bishop, S. (Co-investigator), Bronsvoort, M. (Co-investigator), Burt, D. (Co-investigator), Collie, D. (Co-investigator), Digard, P. (Co-investigator), Freeman, T. (Co-investigator), Glass, E. (Co-investigator), Grey, F. (Co-investigator), Hocking, P. (Co-investigator), Houston, R. (Co-investigator), Hume, D. (Co-investigator), Kaiser, P. (Co-investigator), Nash, A. (Co-investigator), Sang, H. (Co-investigator), Sharp, C. (Co-investigator), Watson, M. (Co-investigator) & Whitelaw, B. (Co-investigator)

    Biotechnology and Biological Sciences Research Council

    1/04/12 → 31/03/17

    Project: Research

  • ISP1: Analysis and prediction in complex animal systems

    Tenesa, A. (Principal Investigator), Archibald, A. (Co-investigator), Beard, P. (Co-investigator), Bishop, S. (Co-investigator), Bronsvoort, M. (Co-investigator), Burt, D. (Co-investigator), Freeman, T. (Co-investigator), Haley, C. (Co-investigator), Hocking, P. (Co-investigator), Houston, R. (Co-investigator), Hume, D. (Co-investigator), Joshi, A. (Co-investigator), Law, A. (Co-investigator), Michoel, T. (Co-investigator), Summers, K. (Co-investigator), Vernimmen, D. (Co-investigator), Watson, M. (Co-investigator), Wiener, P. (Co-investigator), Wilson, A. (Co-investigator), Woolliams, J. (Co-investigator), Ait-Ali, T. (Researcher), Barnett, M. (Researcher), Carlisle, A. (Researcher), Finlayson, H. (Researcher), Haga, I. (Researcher), Karavolos, M. (Researcher), Matika, O. (Researcher), Paterson, T. (Researcher), Paton, B. (Researcher), Pong-Wong, R. (Researcher), Robert, C. (Researcher) & Robertson, G. (Researcher)

    Biotechnology and Biological Sciences Research Council

    1/04/12 → 31/03/17

    Project: Research

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