Whole genome sequences of 234 indigenous African chickens from Ethiopia

Almas Gheyas, Adriana Valleyo-Trujillo, Adebabay Kebede, Tadelle Dessie, Olivier Hanotte, Jacqueline Smith

Research output: Contribution to journalArticlepeer-review

Abstract / Description of output

Indigenous chickens predominate poultry production in Africa. Although preferred for backyard farming because of their adaptability to harsh tropical environments, these populations suffer from relatively low productivity compared to commercial lines. Genome analyses can unravel the genetic potential of improvement of these birds for both production and resilience traits for the benefit of African poultry farming systems. Here we report whole-genome sequences of 234 indigenous chickens from 24 Ethiopian populations distributed under diverse agro-climatic conditions. The data represents over eight terabytes of paired-end sequences from the Ilumina HiSeqX platform with an average coverage of about 57X. Almost 99% of the sequence reads could be mapped against the chicken reference genome (GRCg6a), confirming the high quality of the data. Variant calling detected around 15 million SNPs, of which about 86% are known variants (i.e., present in public databases), providing further confidence on the data quality. The dataset provides an excellent resource for investigating genetic diversity and local environmental adaptations with important implications for breed improvement and conservation purposes.
Original languageEnglish
Article number53
JournalScientific Data
Volume9
Issue number1
Early online date14 Feb 2022
DOIs
Publication statusPublished - 14 Feb 2022

Keywords / Materials (for Non-textual outputs)

  • Animals
  • Chickens/genetics
  • Ethiopia
  • Genome
  • Polymorphism, Single Nucleotide

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