Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. Article › Research › Peer-reviewed
  2. Blunted Medial Prefrontal Cortico-Limbic Reward-Related Effective Connectivity and Depression

    Rupprechter, S., Romaniuk, L., Series, P., Hirose, Y., Hawkins, E., Sandu-Giuraniuc, A., Waiter, G., Mcneil, C. J., Shen, X., Harris, M., Campbell, A., Porteous, D., McFarlane, J., Lawrie, S., Murray, A., Delgado, M., McIntosh, A., Whalley, H. & Steele, D., 8 May 2020, In : Brain.

    Research output: Contribution to journalArticle

  3. Brain white matter structure and information processing speed in healthy older age

    Kuznetsova, K., Munoz-Maniega, S., Ritchie, S., Cox, S., Storkey, A., Starr, J., Wardlaw, J., Deary, I. & Bastin, M., 2015, In : Brain Structure and Function. 21, 6, p. 3323-3235

    Research output: Contribution to journalArticle

  4. BrainTrap: a database of 3D protein expression patterns in the Drosophila brain

    Knowles-Barley, S., Longair, M. & Armstrong, J. D., 2010, In : Database: The Journal of Biological Databases and Curation. 2010, p. 1-9 9 p., baq005.

    Research output: Contribution to journalArticle

  5. Branching and bounding improvements for global optimization algorithms with Lipschitz continuity properties

    Cartis, C., Fowkes, J. M. & Gould, N. I. M., Mar 2015, In : Journal of Global Optimization. 61, 3, p. 429-457 29 p.

    Research output: Contribution to journalArticle

  6. Building a mechanistic model of the development and function of the primary visual cortex

    Bednar, J. A., Sep 2012, In : Journal of Physiology-Paris. 106, 5-6, p. 194-211 18 p.

    Research output: Contribution to journalArticle

  7. Building the Central Complex in Drosophila: The Generation and Development of Distinct Neural Subsets

    Young, J. M. & Armstrong, J. D., 1 May 2010, In : Journal of Comparative Neurology. 518, 9, p. 1525-1541 17 p.

    Research output: Contribution to journalArticle

  8. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

    Paroni, A., Graudenzi, A., Caravagna, G., Damiani, C., Mauri, G. & Antoniotti, M., 4 Feb 2016, In : BMC Bioinformatics. 17, 64, 12 p.

    Research output: Contribution to journalArticle

  9. CAPRI: efficient inference of cancer progression models from cross-sectional data

    Ramazzotti, D., Caravagna, G., Olde Loohuis, L., Graudenzi, A., Korsunsky, I., Mauri, G., Antoniotti, M. & Mishra, B., 15 Sep 2015, In : Bioinformatics. 31, 18, p. 3016-26 11 p.

    Research output: Contribution to journalArticle

  10. CO-Releasing Molecules Have Nonheme Targets in Bacteria: Transcriptomic, mathematical Modeling and Biochemical Analyses of CORM-3 [Ru(CO) 3 Cl (glycinate)] Actions on a Heme-Deficient Mutant of Escherichia coli

    Wilson, J. L., Wareham, L. K., Mclean, S., Begg, R., Greaves, S., Mann, B. E., Sanguinetti, G. & Poole, R. K., 25 Jun 2015, In : Antioxidants and Redox Signaling. 23, 2, p. 148-162 15 p.

    Research output: Contribution to journalArticle

  11. Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation.

    Liepe, J., Taylor, H., Barnes, C. P., Huvet, M., Bugeon, L., Thorne, T., Lamb, J. R., Dallman, M. J. & Stumpf, M. P. H., 1 Mar 2012, In : Integrative Biology. 4, 3, p. 335-345 11 p.

    Research output: Contribution to journalArticle

  12. Carbon monoxide gas is not inert, but global, in its consequences for bacterial gene expression, iron acquisition and antibiotic resistance

    Wareham, L. K., Begg, R., Jesse, H. E., Van Beilen, J., Ali, S., Svistunenko, D., McLean, S., Hellingwerf, K., Sanguinetti, G. & Poole, R. K., 13 Jun 2016, In : Antioxidants and Redox Signaling. 24, 17, p. 1013-1028 16 p.

    Research output: Contribution to journalArticle

  13. Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators

    Davidge, K. S., Sanguinetti, G., Yee, C. H., Cox, A. G., McLeod, C. W., Monk, C. E., Mann, B. E., Motterlini, R. & Poole, R. K., 13 Feb 2009, In : Journal of Biological Chemistry. p. 4516-4524 9 p.

    Research output: Contribution to journalArticle

  14. Cascaded Multilevel Inverter With Regeneration Capability and Reduced Number of Switches

    Lezana, P., Rodriguez, J. & Oyarzun, D. A., 3 Mar 2008, In : IEEE Transactions on Industrial Electronics. 55, 3, p. 1059-1066 8 p.

    Research output: Contribution to journalArticle

  15. Categorial mirror symmetry for K3 surfaces

    Bartocci, C., Bruzzo, U. & Sanguinetti, G., Oct 1999, In : Communications in Mathematical Physics. 206, 2, p. 265-272 8 p.

    Research output: Contribution to journalArticle

  16. Categorical encoding of decision variables in orbitofrontal cortex

    Onken, A., Xie, J., Panzeri, S. & Padoa-Schioppa, C., 14 Oct 2019, In : PLoS Computational Biology. 15, 10, 27 p., e1006667.

    Research output: Contribution to journalArticle

  17. Cellular mechanisms underlying behavioral state-dependent bidirectional modulation of motor cortex output

    Schiemann, J., Puggioni, P., Pelko, M., Domanski, A., Van Rossum, M. & Duguid, I., 26 May 2015, In : Cell Reports. 11, 8, p. 1319–1330

    Research output: Contribution to journalArticle

  18. Changing expectations about speed alters perceived motion direction

    Sotiropoulos, G., Seitz, A. R. & Series, P., 8 Nov 2011, In : Current Biology. 21, 21, p. R883-R884 2 p.

    Research output: Contribution to journalArticle

  19. Changing how Earth System Modelling is done to provide more useful information for decision making, science and society

    Smith, M. J., Palmer, P., Purves, D. W., Vanderwel, M. C., Lyutsarev, V., Calderhead, B., Joppa, L. N., Bishop, C. & Emmott, S., 2014, In : Bulletin of the American Meteorological Society. 95, 9

    Research output: Contribution to journalArticle

  20. Charles Bonnet Syndrome: Evidence for a Generative Model in the Cortex?

    Reichert, D. P., Seriès, P., Storkey, A. J. & Gutkin, B. S. (ed.), 18 Jul 2013, In : PLoS Computational Biology. 9, 7, 19 p., e1003134.

    Research output: Contribution to journalArticle

  21. Circadian control of mouse heart rate and blood pressure by the suprachiasmatic nuclei: behavioral effects are more significant than direct outputs

    Sheward, W. J., Naylor, E., Knowles-Barley, S., Armstrong, J. D., Brooker, G. A., Seckl, J. R., Turek, F. W., Holmes, M. C., Zee, P. C. & Harmar, A. J., 22 Mar 2010, In : PLoS ONE. 5, 3, 9 p., e9783.

    Research output: Contribution to journalArticle

  22. Classification of arterial plaque by spectral analysis of in vitro radio frequency intravascular ultrasound data

    Watson, R. J., McLean, C. C., Moore, M. P., Spencer, T., Salter, D. M., Anderson, T., Fox, K. A. A. & McDicken, W. N., Jan 2000, In : Ultrasound in Medicine & Biology. 26, 1, p. 73-80 8 p.

    Research output: Contribution to journalArticle

  23. Classifying chemical mode of action using gene networks and machine learning: A case study with the herbicide linuron

    Ornostay, A., Cowie, A. M., Hindle, M., Baker, C. J. O. & Martyniuk, C. J., 12 Sep 2013, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 8, 4, p. 263-274 12 p.

    Research output: Contribution to journalArticle

  24. Cleaning sky survey databases using Hough transform and renewal string approaches

    Storkey, AJ., Hambly, NC., Williams, CKI. & Mann, RG., 1 Jan 2004, In : Monthly Notices of the Royal Astronomical Society. 347, 1, p. 36-51 16 p.

    Research output: Contribution to journalArticle

  25. Clustered Coding Variants in the Glutamate Receptor Complexes of Individuals with Schizophrenia and Bipolar Disorder

    Frank, R. A. W., McRae, A. F., Pocklington, A. J., Van De Lagemaat, L., Navarro, P., Croning, M. D. R., Komiyama, N. H., Bradley, S. J., Challiss, R. A. J., Armstrong, J. D., Finn, R. D., Malloy, M. P., MacLean, A. W., Harris, S. E., Starr, J., Bhaskar, S. S., Howard, E. K., Hunt, S. E., Coffey, A. J., Ranganath, V. & 7 others, Deloukas, P., Rogers, J., Muir, W. J., Deary, I. J., Blackwood, D. H., Visscher, P. M. & Grant, S. G. N., 29 Apr 2011, In : PLoS ONE. 6, 4, p. - 9 p., e19011.

    Research output: Contribution to journalArticle

  26. Co-Designing a Device for Behaviour-Based Energy Reduction in a Large Organisation

    Morgan, E., Webb, L., Carter, C. & Goddard, N., Nov 2018, In : Proceedings of the ACM on Human-Computer Interaction. 2, CSCW, p. 125:1-125:23 23 p., 125.

    Research output: Contribution to journalArticle

  27. CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

    Rubinacci, S., Graudenzi, A., Caravagna, G., Mauri, G., Osborne, J., Pitt-Francis, J. & Antoniotti, M., 1 Sep 2015, In : Cancer Informatics. p. 53-65 13 p.

    Research output: Contribution to journalArticle

  28. Combinatorial stresses kill pathogenic Candida species

    Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H. L., Ingram, P., McDonagh, A., De Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E. & 10 others, Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K. & Brown, A. J. P., 1 Oct 2012, In : Medical Mycology. 50, 7, p. 699-709 11 p.

    Research output: Contribution to journalArticle

  29. Combining belief networks and neural networks for scene segmentation

    Feng, X., Williams, C. K. I. & Felderhof, S. N., 1 Apr 2002, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 24, 4, p. 467-483 17 p.

    Research output: Contribution to journalArticle

  30. Combining tree-based and dynamical systems for the inference of gene regulatory networks

    Huynh-Thu, V. A. & Sanguinetti, G., 15 May 2015, In : Bioinformatics. 31, 10, p. 1614-1622 9 p.

    Research output: Contribution to journalArticle

  31. Combining two methods of recognizing hand-printed digits

    E. Hinton, G., Williams, C. K. I. & Revow, M. D., 1992, In : Artificial Neural Networks. 2, p. 53-60 8 p.

    Research output: Contribution to journalArticle

  32. Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus

    Su, Z., Gay, L. J., Strange, A., Palles, C., Band, G., Whiteman, D. C., Lescai, F., Langford, C., Nanji, M., Edkins, S., Van Der Winkel, A., Levine, D., Sasieni, P., Bellenguez, C., Howarth, K., Freeman, C., Trudgill, N., Tucker, A. T., Pirinen, M., Peppelenbosch, M. P. & 124 others, Van Der Laan, L. J. W., Kuipers, E. J., Drenth, J. P. H., Peters, W. H., Reynolds, J. V., Kelleher, D. P., Mcmanus, R., Grabsch, H., Prenen, H., Bisschops, R., Krishnadath, K., Siersema, P. D., Van Baal, J. W. P. M., Middleton, M., Petty, R., Gillies, R., Burch, N., Bhandari, P., Paterson, S., Edwards, C., Penman, I., Vaidya, K., Ang, Y., Murray, I., Patel, P., Ye, W., Mullins, P., Wu, A. H., Bird, N. C., Dallal, H., Shaheen, N. J., Murray, L. J., Koss, K., Bernstein, L., Romero, Y., Hardie, L. J., Zhang, R., Winter, H., Corley, D. A., Panter, S., Risch, H. A., Reid, B. J., Sargeant, I., Gammon, M. D., Smart, H., Dhar, A., Mcmurtry, H., Ali, H., Liu, G., Casson, A. G., Chow, W., Rutter, M., Tawil, A., Morris, D., Nwokolo, C., Isaacs, P., Rodgers, C., Ragunath, K., Macdonald, C., Haigh, C., Monk, D., Davies, G., Wajed, S., Johnston, D., Gibbons, M., Cullen, S., Church, N., Langley, R., Griffin, M., Alderson, D., Deloukas, P., Hunt, S. E., Gray, E., Dronov, S., Potter, S. C., Tashakkori-ghanbaria, A., Anderson, M., Brooks, C., Blackwell, J. M., Bramon, E., Brown, M. A., Casas, J. P., Corvin, A., Duncanson, A., Markus, H. S., Mathew, C. G., Palmer, C. N. A., Plomin, R., Rautanen, A., Sawcer, S. J., Trembath, R. C., Viswanathan, A. C., Wood, N., Trynka, G., Wijmenga, C., Cazier, J., Atherfold, P., Nicholson, A. M., Gellatly, N. L., Glancy, D., Cooper, S. C., Cunningham, D., Lind, T., Hapeshi, J., Ferry, D., Rathbone, B., Brown, J., Love, S., Attwood, S., Macgregor, S., Watson, P., Sanders, S., Ek, W., Harrison, R. F., Moayyedi, P., De Caestecker, J., Barr, H., Stupka, E., Vaughan, T. L., Peltonen, L., Spencer, C. C. A., Tomlinson, I., Donnelly, P. & Jankowski, J. A. Z., 1 Oct 2012, In : Nature Genetics. 44, 10, p. 1131-1136

    Research output: Contribution to journalArticle

  33. Comparing Bayesian Neural Network Algorithms for Classifying Segmented Outdoor Images

    Vivarelli, F. & Williams, C. K. I., 1 May 2001, In : Neural Networks. 14, 4-5, p. 427-437 11 p.

    Research output: Contribution to journalArticle

  34. Comparison of different moment-closure approximations for stochastic chemical kinetics

    Schnoerr, D., Sanguinetti, G. & Grima, R., 14 Nov 2015, In : The Journal of Chemical Physics. 143, 18, 17 p., 185101.

    Research output: Contribution to journalArticle

  35. Compensations for Diminished Terminal Oxidase Activity in Escherichia coli: Cytochrome bd-II-Mediated Respiration and Glutamate Metabolism

    Shepherd, M., Sanguinetti, G., Cook, G. M. & Poole, R. K., 11 Jun 2010, In : Journal of Biological Chemistry. 285, 24, p. 18464-18472 9 p.

    Research output: Contribution to journalArticle

  36. Complexity Leadership in Learning Analytics: Drivers, Challenges, and Opportunities

    Tsai, Y-S., Poquet, O., Gašević, D., Dawson, S. & Pardo, A., 21 Oct 2019, In : British Journal of Educational Technology. 50, 6, p. 2839–2854

    Research output: Contribution to journalArticle

  37. Complexity and specificity of experimentally-induced expectations in motion perception

    Chalk, M., Seitz, A. R., Seriès, P. & Gekas, N., Mar 2013, In : Journal of Vision. 13, 4, 8.

    Research output: Contribution to journalArticle

  38. Computation With Infinite Neural Networks

    Williams, C. K. I., 1 Jul 1997, In : Neural Computation. 10, 5, p. 1203-1216 14 p.

    Research output: Contribution to journalArticle

  39. Computation with populations codes in layered networks of integrate-and-fire neurons

    van Rossum, M. C. W. & Renart, A., 2004, In : Neurocomputing. 58-60, 0, p. 265 - 270

    Research output: Contribution to journalArticle

  40. Computational modelling of memory retention from synapse to behaviour

    van Rossum, M. C. W. & Shippi, M., 12 Mar 2013, In : Journal of Statistical Mechanics: Theory and Experiment. 2013, 03, 13 p., P03007.

    Research output: Contribution to journalArticle

  41. Computers and Octi: Report from the 2001 Tournament

    Sutton, C., Jun 2002, In : ICGA Journal. 25, 2, p. 105-112

    Research output: Contribution to journalArticle

  42. Conditioned Task-set Competition: Neural Mechanisms of Emotional Interference in Depression

    Series, P., Apr 2017, In : Cognitive, Affective & Behavioral Neuroscience. 17, 2, p. 1-21 22 p.

    Research output: Contribution to journalArticle

  43. Confidence-based integrated reweighting model of task-difficulty explains location-based specificity in perceptual learning

    Talluri, B. C., Hung, S., Seitz, A. R. & Seriès, P., 29 Dec 2015, In : Journal of Vision. 15, 10, 12 p., 17.

    Research output: Contribution to journalArticle

  44. Consequences of selecting technology pathways on cumulative carbon dioxide emissions for the United Kingdom Applied Energy

    Roberts, S. H., Foran, B. D., Axon, C. J., Warr, B. S. & Goddard, N., 28 Jun 2018, In : Applied energy. 228, p. 409-425 17 p.

    Research output: Contribution to journalArticle

  45. Consolidation and translation regulation

    Gal-Ben-Ari, S., Kenney, J. W., Ounalla-Saad, H., Taha, E., David, O., Levitan, D., Gildish, I., Panja, D., Pai, B., Wibrand, K., Simpson, T. I., Proud, C. G., Bramham, C. R., Armstrong, J. D. & Rosenblum, K., Sep 2012, In : Learning & Memory. 19, 9, p. 410-22 13 p.

    Research output: Contribution to journalArticle

  46. Contrast dependency and prior expectations in human speed perception

    Sotiropoulos, G., Seitz, A. R. & Series, P., 2014, In : Vision Research. 97, 0, p. 16-23 8 p.

    Research output: Contribution to journalArticle

  47. Contribution of LFP dynamics to single-neuron spiking variability in motor cortex during movement execution

    Rule, M., Vargas-Irwin, C., Donoghue, J. P. & Truccolo, W., 22 Jun 2015, In : Frontiers in Systems Neuroscience. 9, 16 p., 89.

    Research output: Contribution to journalArticle

  48. Controlled overexpression of Pax6 in vivo negatively autoregulates the Pax6 locus, causing cell-autonomous defects of late cortical progenitor proliferation with little effect on cortical arealization

    Manuel, M., Georgala, P. A., Carr, C. B., Chanas, S., Kleinjan, D. A., Martynoga, B., Mason, J. O., Molinek, M., Pinson, J., Pratt, T., Quinn, J. C., Simpson, I., Tyas, D. A., van Heyningen, V., West, J. D. & Price, D. J., 2007, In : Development. 134, 3, p. 545-55 11 p.

    Research output: Contribution to journalArticle

  49. Correlated topographic analysis: estimating an ordering of correlated components

    Sasaki, H., Gutmann, M. U., Shouno, H. & Hyvärinen, A., 2013, In : Machine Learning. 92, 2-3, p. 285-317 33 p.

    Research output: Contribution to journalArticle

  50. Correlation based learning from spike timing dependent plasticity

    van Rossum, M. C. W. & Turrigiano, G. G., 2001, In : Neurocomputing. 38 - 40, p. 409 - 415 7 p.

    Research output: Contribution to journalArticle

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