Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. Article › Research › Peer-reviewed
  2. Cox process representation and inference for stochastic reaction-diffusion processes

    Schnoerr, D., Grima, R. & Sanguinetti, G., 25 May 2016, In : Nature Communications. 7, p. 1-11 11 p., 11729.

    Research output: Contribution to journalArticle

  3. Creating, documenting and sharing network models

    Crook, S. M., Bednar, J. A., Berger, S., Cannon, R., Davison, A. P., Djurfeldt, M., Eppler, J., Kriener, B., Furber, S., Graham, B., Plesser, H. E., Schwabe, L., Smith, L., Steuber, V. & van Albada, S., 2012, In : Network: Computation in Neural Systems. 23, 4, p. 131-149 19 p.

    Research output: Contribution to journalArticle

  4. Cumulative signal transmission in nonlinear reaction-diffusion networks

    Oyarzún, D. A., López-Caamal, F., Garcia, M. R., Middleton, R. H. & Weiße, A. Y., 5 Aug 2013, In : PLoS ONE. 8, 5

    Research output: Contribution to journalArticle

  5. Curvature–driven smoothing: a learning algorithm for feedforward networks

    Bishop, C., 1993, In : IEEE Transactions on Neural Networks. 4, 5, p. 882-884 3 p.

    Research output: Contribution to journalArticle

  6. CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress

    Holyoake, L. V., Hunt, S., Sanguinetti, G., Cook, G. M., Howard, M. J., Rowe, M. L., Poole, R. K. & Shepherd, M., 15 Mar 2016, In : Biochemical Journal. 473, 6, p. 693-701 9 p.

    Research output: Contribution to journalArticle

  7. DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks

    Lukauskas, S., Visintainer, R., Sanguinetti, G. & Schweikert, G., 13 Dec 2016, In : BMC Bioinformatics. 17, 16, 15 p.

    Research output: Contribution to journalArticle

  8. Dendritic Spine Dynamics Regulate the Long-Term Stability of Synaptic Plasticity

    O'Donnell, C., Nolan, M. & Van Rossum, M., 9 Nov 2011, In : Journal of Neuroscience. 31, 45, p. 16142-16156 15 p.

    Research output: Contribution to journalArticle

  9. Density of states of disordered systems

    van Rossum, M., Nieuwenhuizen, T. M., Hofstetter, E. & Schreiber, M., 1 May 1994, In : Physical Review B: Condensed Matter and Materials Physics. 49, p. 13377-13382 6 p.

    Research output: Contribution to journalArticle

  10. Derivative processes for modelling metabolic fluxes

    Žurauskiene, J., Kirk, P., Thorne, T., Pinney, J. & Stumpf, M., 1 Jul 2014, In : Bioinformatics. 30, 13, p. 1892-1898 7 p.

    Research output: Contribution to journalArticle

  11. Design of a bistable switch to control cellular uptake

    Oyarzun, D. & Madalena, C., 6 Dec 2015, In : Journal of the Royal Society Interface. 12, 113, 15 p., 20150618.

    Research output: Contribution to journalArticle

  12. Design of the TRONCO BioConductor Package for TRanslational ONCOlogy

    Antoniotti, M., Caravagna, G., De Sano, L., Graudenzi, A., Mauri, G., Mishra, B. & Ramazzotti, D., 21 Oct 2016, In : The R Journal. 8, 2, p. 39-59 21 p.

    Research output: Contribution to journalArticle

  13. Detecting and Quantifying Topography in Neural Maps

    Yarrow, S., Seitz, A. R., Seriès, P. & Razak, K., 5 Feb 2014, In : PLoS Neglected Tropical Diseases. 9, 2, 14 p., e87178.

    Research output: Contribution to journalArticle

  14. Detecting repeated cancer evolution from multi-region tumor sequencing data

    Caravagna, G., Giarratano, Y., Ramazzotti, D., Tomlinson, I., Graham, T. A., Sanguinetti, G. & Sottoriva, A., 31 Aug 2018, In : Nature Methods. 15, p. 707-714 8 p.

    Research output: Contribution to journalArticle

  15. Developing Complex Systems Using Evolved Pattern Generators

    Valsalam, V. K., Bednar, J. A. & Miikkulainen, R., 2007, In : IEEE Transactions on Evolutionary Computation. p. 181-198 18 p.

    Research output: Contribution to journalArticle

  16. Development of maps of simple and complex cells in the primary visual cortex

    Antolik, J. & Bednar, J. A., 2011, In : Frontiers in Computational Neuroscience. 5, 17

    Research output: Contribution to journalArticle

  17. Development of the ASHRAE Global Thermal Comfort Database II

    Földváry, V., Cheung, T., Zhang, H., de Dear, R., Parkinson, T., Arens, E., Chun, C., Schiavon, S., Luo, M., Brager, G., Li, P., Kaam, S., Adebamowo, M. A., Andamon, M. M., Babich, F., Bouden, C., Bukovianska, H., Candido, C., Cao, B., Carlucci, S. & 44 others, Cheong, D. K. W., Choi, J-H., Cook, M., Cropper, P., Deuble, M., Heidari, S., Indraganti, M., Jin, Q., Kim, H., Kim, J., Konis, K., Singh, M. K., Kwok, A., Lamberts, R., Loveday, D., Langevin, J., Manu, S., Moosmann, C., Nicol, F., Ooka, R., Oseland, N. A., Pagliano, L., Petráš, D., Rawal, R., Romero, R., Sekhar, C., Schweiker, M., Tartarini, F., Tanabe, S., Tham, K. W., Teli, D., Toftum, J., Toledo, L., Tsuzuki, K., De Vecchi, R., Wagner, A., Wang, Z., Wallbaum, H., Webb, L., Yang, L., Zhu, Y., Zhai, Y., Zhang, Y. & Zhou, X., Sep 2018, In : Building and Environment. 142, p. 502-512 11 p.

    Research output: Contribution to journalArticle

  18. Developmental Profiles of Eczema, Wheeze, and Rhinitis: Two Population-Based Birth Cohort Studies

    Belgrave, D. C. M., Granell, R., Simpson, A., Guiver, J., Bishop, C., Buchan, I. E., Henderson, J. & Custovic, A., 1 Oct 2014, In : PLoS ONE. 11, 10, 14 p., e1001748.

    Research output: Contribution to journalArticle

  19. Developmental organization of central neurons in the adult Drosophila ventral nervous system

    Shepherd, D., Sahota, V., Court, R., Williams, D. W. & Truman, J. W., 15 Oct 2019, In : Journal of Comparative Neurology. 527, 15, p. 2573-2598 72 p.

    Research output: Contribution to journalArticle

  20. Developments of the generative topographic mapping

    Bishop, C. M., Svensén, M. & Williams, C. K. I., Nov 1998, In : Neurocomputing. 21, 1–3, p. 203-224 22 p.

    Research output: Contribution to journalArticle

  21. Deviations from the Gaussian distribution of mesoscopic conductance fluctuations

    van Rossum, M., Lerner, I. V., Altshuler, B. L. & Nieuwenhuizen, T. M., 1 Feb 1997, In : Physical Review B. 55, p. 4710-4716 7 p.

    Research output: Contribution to journalArticle

  22. Dietary Salt Levels Affect Salt Preference and Learning in Larval Drosophila

    Russell, C., Wessnitzer, J., Young, J. M., Armstrong, J. D. & Webb, B., 1 Jun 2011, In : PLoS ONE. 6, 6, 8 p., e20100.

    Research output: Contribution to journalArticle

  23. Differential vergence movements in reading Chinese and English: Greater fixation-initial binocular disparity is advantageous in reading the denser orthography

    Hsiao, Y., Shillcock, R., Obregón, M., Kreiner, H., Roberts, M. A. J. & McDonald, S., 11 Jul 2017, In : Quarterly Journal of Experimental Psychology. p. 1-33 33 p.

    Research output: Contribution to journalArticle

  24. Direct Learning of Sparse Changes in Markov Networks by Density Ratio Estimation

    Liu, S., Quinn, J. A., Gutmann, M. U., Suzuki, T. & Sugiyama, M., 1 Mar 2014, In : Neural Computation. 26, 6, p. 1169-1197 29 p.

    Research output: Contribution to journalArticle

  25. Disruption of early events in thalamocortical tract formation in mice lacking the transcription factors Pax6 or Foxg1

    Pratt, T., Quinn, J. C., Simpson, T. I., West, J. D., Mason, J. O. & Price, D. J., 2002, In : Journal of Neuroscience. 22, 19, p. 8523-31 9 p.

    Research output: Contribution to journalArticle

  26. Dissecting Magnetar Variability with Bayesian Hierarchical Models

    Huppenkothen, D., Brewer, B. J., Hogg, D. W., Murray, I., Frean, M., Elenbaas, C., Watts, A. L., Levin, Y., Van Der Horst, A. J. & Kouveliotou, C., 1 Sep 2015, In : Astrophysical Journal. 810, 1, 21 p.

    Research output: Contribution to journalArticle

  27. Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons

    Chapelle, J., Sorokina, O., McLean, C., Salemme, V., Alfieri, A., Angelini, C., Morellato, A., Adrait, A., Menna, E., Matteoli, M., Couté, Y., Ala, U., Turco, E., Defilippi, P. & Armstrong, J. D., 15 Oct 2019, In : Frontiers in Cell and Developmental Biology. 7, 19 p., 222.

    Research output: Contribution to journalArticle

  28. Dissociation between sustained single-neuron spiking β-rhythmicity and transient β-LFP oscillations in primate motor cortex

    Rule, M. E., Vargas-Irwin, C. E., Donoghue, J. P. & Truccolo, W., 18 Jan 2017, In : Journal of Neurophysiology. p. 1-52 52 p.

    Research output: Contribution to journalArticle

  29. Distinct learning-induced changes in stimulus selectivity and interactions of GABAergic interneuron classes in visual cortex

    Khan, A. G., Poort, J., Chadwick, A., Blot, A., Sahani, M., Mrsic-Flogel, T. D. & Hofer, S. B., Jun 2018, In : Nature Neuroscience. 21, 6, p. 851-859 9 p.

    Research output: Contribution to journalArticle

  30. Distributed inference and query processing for RFID tracking and monitoring

    Cao, Z., Sutton, C., Diao, Y. & Shenoy, P., Feb 2011, In : Proceedings of the VLDB Endowment (PVLDB). 4, 5, p. 326-337 12 p.

    Research output: Contribution to journalArticle

  31. Double objective optimal multivariable ripple-free deadbeat control

    Salgado, M. E. & Oyarzún, D. A., 2007, In : International journal of control. 80, 5, p. 763-773 11 p.

    Research output: Contribution to journalArticle

  32. Drosophila circadian rhythms in semi-natural environments; the summer afternoon component is not an artifact and requires TrpA1 channels

    Green, E. W., O'Callaghan, E. K., Hansen, C. N., Bastianello, S., Bhutani, S., Vanin, S., Armstrong, J. D., Costa, R. & Kyriacou, C. P., 2015, In : Proceedings of the National Academy of Sciences. 112, 28, p. 8702-8707 6 p.

    Research output: Contribution to journalArticle

  33. Drosophila melanogaster: The model organism of choice for the complex biology of multicellular organisms

    Beckingham, K. M., Armstrong, D., Texada, M. J., Munjaal, R. & Baker, D. A., 2005, In : Gravitational and Space Biology. 18, 2

    Research output: Contribution to journalArticle

  34. Dying mRNA Tells a Story of Its Life

    Wallace, EW. J. & Drummond, D. A., 4 Jun 2015, In : Cell. 161, 6, p. 1246 - 1248 3 p.

    Research output: Contribution to journalArticle

  35. Dynamic Conditional Random Fields: Factorized Probabilistic Models for Labeling and Segmenting Sequence Data

    Sutton, C., McCallum, A. & Rohanimanesh, K., 1 May 2007, In : Journal of Machine Learning Research. 8, p. 693-723 31 p.

    Research output: Contribution to journalArticle

  36. Dynamic competition between contour integration and contour segmentation probed with moving stimuli

    Lorenceau, J., Giersch, A. & Seriés, P., 1 Jan 2005, In : Vision Research. 45, 1, p. 103-116

    Research output: Contribution to journalArticle

  37. Dynamic metabolic control: towards precision engineering of metabolism

    Liu, D., Mannan, A. A., Han, Y., Oyarzun, D. & Zhang, F., 1 Jul 2018, In : Journal of Industrial Microbiology & Biotechnology. 45, 7, p. 535-543 9 p.

    Research output: Contribution to journalArticle

  38. Dynamic optimization of metabolic networks coupled with gene expression

    Waldherr, S., Oyarzún, D. A. & Bockmayr, A., 21 Jan 2015, In : Journal of Theoretical Biology. 365, p. 469-485 17 p.

    Research output: Contribution to journalArticle

  39. Dynamic trees for image modelling

    Adams, N. J. & Williams, C. K. I., Sep 2003, In : Image and vision computing. 21, 10, p. 865-877 13 p.

    Research output: Contribution to journalArticle

  40. Dynamical Constraints on Using Precise Spike Timing to Compute in Recurrent Cortical Networks

    Banerjee, A., Seriés, P. & Pouget, A., 1 Apr 2008, In : Neural Computation. 20, 4, p. 974-993

    Research output: Contribution to journalArticle

  41. Dynamical Inference from a Kinematic Snapshot: The Force Law in the Solar System

    Bovy, J., Murray, I. & Hogg, D. W., Mar 2010, In : Astrophysical Journal. 711, 2, p. 1157-1167 11 p.

    Research output: Contribution to journalArticle

  42. Dynamics and Robustness of Familiarity Memory

    Cortes, J. M., Greve, A., Barrett, A. B. & van Rossum, M. C. W., 20 Oct 2009, In : Neural Computation. 22, 2, p. 448-466 19 p.

    Research output: Contribution to journalArticle

  43. Dynamics of Elongation Factor 2 Kinase Regulation in Cortical Neurons in Response to Synaptic Activity

    Kenney, J. W., Sorokina, O., Genheden, M., Sorokin, A., Armstrong, J. D. & Proud, C. G., 18 Feb 2015, In : Journal of Neuroscience. 35, 7, p. 3034-3047 14 p.

    Research output: Contribution to journalArticle

  44. Dynamics of a starvation-to-surfeit shift: a transcriptomic and modelling analysis of the bacterial response to zinc reveals transient behaviour of the Fur and SoxS regulators

    Graham, A. I., Sanguinetti, G., Bramall, N., McLeod, C. W. & Poole, R. K., 2012, In : Microbiology. 158, 1, p. 284-292 9 p.

    Research output: Contribution to journalArticle

  45. Dynamics of complex feedback architectures in metabolic pathways

    Chaves, M. & Oyarzun, D., 1 Jan 2019, In : Automatica. 99, p. 323-332 10 p.

    Research output: Contribution to journalArticle

  46. ELFI: Engine for Likelihood-Free Inference

    Lintusaari, J., Vuollekoski, H., Kangasrääsiö, A., Skyten, K., Järvenpää, M., Marttinen, P., Gutmann, M., Vehtari, A., Corander, J. & Kaski, S., 20 Jun 2018, (Accepted/In press) In : Journal of Machine Learning Research. 8 p.

    Research output: Contribution to journalArticle

  47. Early-Stage Waves in the Retinal Network Emerge Close to a Critical State Transition between Local and Global Functional Connectivity

    Hennig, M. H., Adams, C., Willshaw, D. & Sernagor, E., Jan 2009, In : The Journal of Neuroscience. 29, 4, p. 1077-1086 10 p.

    Research output: Contribution to journalArticle

  48. Edge co-occurrences are sufficient to categorize natural versus animal images

    Perrinet, L. U. & Bednar, J. A., 22 Aug 2014, In : Journal of Vision. 14, 10, p. 1310-1310

    Research output: Contribution to journalArticle

  49. Effects of Noise on the Spike Timing Precision of Retinal Ganglion Cells

    van Rossum, M. C. W., O'Brien, B. J. & Smith, R. G., 2003, In : Journal of Neurophysiology. 89, 5, p. 2406-2419 14 p.

    Research output: Contribution to journalArticle

  50. Effects of fixational eye movements on retinal ganglion cell responses: a modelling study

    Hennig, M. H. & Wörgötter, F., 2007, In : Frontiers in Computational Neuroscience. 1, 2, p. 69-84

    Research output: Contribution to journalArticle

  51. Efficient acquisition rules for model-based approximate Bayesian computation

    Järvenpää, M., Gutmann, M., Pleska, A., Vehtari, A. & Marttinen, P., 18 Sep 2018, In : Bayesian analysis. 28 p.

    Research output: Contribution to journalArticle

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