Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. 2017
  2. Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress

    Van Nues, R., Schweikert, G., De Leau, E., Selega, A., Langford, A., Franklin, R., Iosub, I., Wadsworth, P., Sanguinetti, G. & Granneman, S., 11 Apr 2017, In : Nature Communications. 8, 12.

    Research output: Contribution to journalArticle

  3. Aye or naw, whit dae ye hink? Scottish independence and linguistic identity on social media

    Shoemark, P., Sur, D., Shrimpton, L., Murray, I. & Goldwater, S., 7 Apr 2017, European Chapter of the Association for Computational Linguistics (EACL 2017). Valencia, Spain : Association for Computational Linguistics, p. 1239–1248 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. Conditioned Task-set Competition: Neural Mechanisms of Emotional Interference in Depression

    Series, P., Apr 2017, In : Cognitive, Affective & Behavioral Neuroscience. 17, 2, p. 1-21 22 p.

    Research output: Contribution to journalArticle

  5. Pseudo-marginal Markov Chain Monte Carlo for Nonnegative Matrix Factorization

    Du, J. & Zhong, M., Apr 2017, In : Neural Processing Letters. 45, 2, p. 553-562 10 p.

    Research output: Contribution to journalArticle

  6. Unsupervised spike sorting for large scale, high density multielectrode arrays

    Hilgen, G., Sindaci, M. S., Pirmoradian, S., Muthmann, J-O., Kepiro, I., Ullo, S., Juarez Ramirez, C., Encinas, A. P., Maccione, A., Berdondini, L., Murino, V., Sona, D., Cella Zanacchi, F., Sernagor, E. & Hennig, M. H., 7 Mar 2017, In : Cell Reports. 18, 10, p. 2521-2532 12 p.

    Research output: Contribution to journalArticle

  7. Pan-retinal characterisation of Light Responses from Ganglion Cells in the Developing Mouse Retina

    Hilgen, G., Pirmoradian, S., Pamplona, D., Kornprobst, P., Cessac, B., Hennig, M. H. & Sernagor, E., 10 Feb 2017, In : Scientific Reports. 7, 14 p., 42330.

    Research output: Contribution to journalArticle

  8. Autofolding for Source Code Summarization

    Fowkes, J., Chanthirasegaran, P., Ranca, R., Allamanis, M., Lapata, M. & Sutton, C., 6 Feb 2017, In : IEEE Transactions on Software Engineering. 1 p.

    Research output: Contribution to journalArticle

  9. Approximation and inference methods for stochastic biochemical kinetics - a tutorial review

    Schnoerr, D., Sanguinetti, G. & Grima, R., 25 Jan 2017, In : Journal of Physics A: Mathematical and Theoretical. 093001.

    Research output: Contribution to journalArticle

  10. Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation

    Heitmann, S., Rule, M., Truccolo, W., Ermentrout, B. & Latham, P. E. (ed.), 24 Jan 2017, In : PLoS Computational Biology. 13, 1, p. 1-13 13 p., e1005349.

    Research output: Contribution to journalArticle

  11. Modeling Trait Anxiety: From Computational Processes to Personality

    Raymond, J. G., Steele, J. D. & Seriès, P., 23 Jan 2017, In : Frontiers in psychiatry. 8, p. 1-19 19 p., 1.

    Research output: Contribution to journalArticle

  12. Dissociation between sustained single-neuron spiking β-rhythmicity and transient β-LFP oscillations in primate motor cortex

    Rule, M. E., Vargas-Irwin, C. E., Donoghue, J. P. & Truccolo, W., 18 Jan 2017, In : Journal of Neurophysiology. p. 1-52 52 p.

    Research output: Contribution to journalArticle

  13. Functional consequences of pre- and postsynaptic expression of 2 synaptic plasticity

    Costa, R. P., Mizusaki, B. E. P., Sjöström, P. J. & Van Rossum, M., 16 Jan 2017, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 372, 1715, p. 1-10 10 p.

    Research output: Contribution to journalArticle

  14. Integrating Hebbian and homeostatic plasticity: the current state of the field and future research directions

    Keck, T., Toyoizumi, T., Chen, L., Doiron, B., Feldman, D. E., Fox, K., Gerstner, W. G., Haydon, P. G., Hübener, M., Lee, H-K., Lisman, J. E., Rose, T., Sengpiel, F., Stellwagen, D., Stryker, M. P., Turrigiano, G. G. & Van Rossum, M., 16 Jan 2017, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 372, 1715, 23 p.

    Research output: Contribution to journalArticle

  15. Sparse Approximate Inference for Spatio-Temporal Point Process Models

    Cseke, B., Sanguinetti, G. & Mangion, A. Z., 4 Jan 2017, In : Journal of the American Statistical Association. 111, 516, p. 1746-1763 8 p.

    Research output: Contribution to journalArticle

  16. Fundamentals and Recent Developments in Approximate Bayesian Computation

    Lintusaari, J., Gutmann, M., Dutta, R., Kaski, S. & Corander, J., 1 Jan 2017, In : Systematic biology. 66, 1, p. e66-e82 17 p.

    Research output: Contribution to journalArticle

  17. A Systematic Nomenclature for the Drosophila Ventral Nervous System

    Court, R. C., Armstrong, J. D., Borner, J., Card, G., Costa, M., Dickinson, M., Duch, C., Korff, W., Mann, R., Merritt, D., Murphey, R., Namiki, S., Seeds, A., Shepherd, D., Shirangi, T., Simpson, J., Truman, J., Tuthill, J. & Williams, D., 2017, (Submitted).

    Research output: Working paper

  18. Inference of neuronal functional circuitry with spike-triggered non-negative matrix factorization

    Liu, J. K., Schreyer, H. M., Onken, A., Rozenblit, F., Khani, M. H., Krishnamoorthy, V., Panzeri, S. & Gollisch, T., 2017, In : Nature Communications. 8, 1, p. 1-14 14 p., 149.

    Research output: Contribution to journalArticle

  19. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments

    Selega, A., Sirocchi, C., Iosub, I., Granneman, S. & Sanguinetti, G., 2017, In : Nature Methods. 14, 1, p. 83-89 10 p.

    Research output: Contribution to journalArticle

  20. 2016
  21. DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks

    Lukauskas, S., Visintainer, R., Sanguinetti, G. & Schweikert, G., 13 Dec 2016, In : BMC Bioinformatics. 17, 16, 15 p.

    Research output: Contribution to journalArticle

  22. Structured Prediction of Unobserved Voxels from a Single Depth Image

    Firman, M., Mac Aodha, O., Julier, S. & Brostow, G. J., 12 Dec 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR). Institute of Electrical and Electronics Engineers (IEEE), p. 5431-5440 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  23. Mixed vine copulas as joint models of spike counts and local field potentials

    Onken, A. & Panzeri, S., 11 Dec 2016, Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, December 5-10, 2016, Barcelona, Spain. Barcelona, Spain: Neural Information Processing Systems, p. 1325-1333 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  24. Data Cleaning using Probabilistic Models of Integrity Constraints

    Eduardo, S. & Sutton, C., 10 Dec 2016, NIPS 2016 Workshop on Artificial Intelligence for Data Science (AI4DataSci 2016). 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  25. Fast ε-free Inference of Simulation Models with Bayesian Conditional Density Estimation

    Papamakarios, G. & Murray, I., 10 Dec 2016, 30th Conference on Neural Information Processing Systems (NIPS 2016). Barcelona, Spain: Curran Associates Inc, p. 1028-1036 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  26. Continuously tempered Hamiltonian Monte Carlo

    Graham, M. & Storkey, A., 9 Dec 2016.

    Research output: Contribution to conferenceAbstract

  27. Trends and challenges in Computational RNA biology

    Selega, A. & Sanguinetti, G., 7 Dec 2016, In : Genome Biology. 17, 253, p. 1-4 4 p.

    Research output: Contribution to journalMeeting abstract

  28. Overcoming Occlusion with Inverse Graphics

    Moreno, P., Williams, C. K. I., Nash, C. & Kohli, P., 16 Nov 2016, Computer Vision: ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part III. Hua, G. & Jégou, H. (eds.). Cham: Springer International Publishing, p. 170-185 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9915).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Expectation propagation for continuous time stochastic processes

    Cseke, B., Schnoerr, D., Opper, M. & Sanguinetti, G., 14 Nov 2016, In : Journal of Physics A: Mathematical and Theoretical. 49, 18 p., 494002.

    Research output: Contribution to journalArticle

  30. Using Matrix and Tensor Factorizations for the Single-Trial Analysis of Population Spike Trains

    Onken, A., Liu, J. K., Karunasekara, P. P. C. R., Delis, I., Gollisch, T. & Panzeri, S., 4 Nov 2016, In : PLoS Computational Biology. 12, 11, p. 1-46 46 p., e1005189.

    Research output: Contribution to journalArticle

  31. Evidence for evolutionary divergence of activity-dependent gene expression in developing neurons

    Qiu, J., McQueen, J., Bilican, B., Dando, O., Magnani, D., Punovuori, K., Selvaraj, B. T., Livesey, M., Haghi, G., Heron, S., Burr, K., Patani, R., Rajan, R., Sheppard, O., Kind, P. C., Simpson, I., Tybulewicz, V. LJ., Wyllie, D. JA., Fisher, E. MC., Lowell, S. & 3 others, Chandran, S., Hardingham, G. E. & West, A. (ed.), 3 Nov 2016, In : eLIFE. 5, 21 p., e20337.

    Research output: Contribution to journalArticle

  32. Parameter-Free Probabilistic API Mining across GitHub

    Fowkes, J. & Sutton, C., 1 Nov 2016, FSE 2016: ACM SIGSOFT International Symposium on the Foundations of Software Engineering. Seattle, United States: ACM, p. 254-265 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Neural Maps: Their Function and Development

    Bednar, J. & Williams, C. K. I., Nov 2016, From Neuron to Cognition via Computational > Neuroscience. Arbib, M. & Bonaiuto, J. (eds.). MIT Press, p. 409-432 34 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  34. Design of the TRONCO BioConductor Package for TRanslational ONCOlogy

    Antoniotti, M., Caravagna, G., De Sano, L., Graudenzi, A., Mauri, G., Mishra, B. & Ramazzotti, D., 21 Oct 2016, In : The R Journal. 8, 2, p. 39-59 21 p.

    Research output: Contribution to journalArticle

  35. Statistical modeling of isoform splicing dynamics from RNA-seq time series data

    Huang, Y. & Sanguinetti, G., 1 Oct 2016, In : Bioinformatics. 32, 19, p. 2965-2972 8 p.

    Research output: Contribution to journalArticle

  36. Bioluminescence-based approach to monitor neural activity in freely moving Drosophilalarvae

    Marescotti, M., Lagogiannis, K., Davies, W., Webb, B. & Armstrong, J. D., Oct 2016. 1 p.

    Research output: Contribution to conferencePoster

  37. Detecting Artifactual Events in Vital Signs Monitoring Data

    Lal, P., Williams, C. K. I., Georgatzis, K., Hawthorne, C., McMonagle, P., Piper, I. & Shaw, M., Oct 2016, Machine Learning for Healthcare Technologies. Clifton, D. A. (ed.). IET, p. 7-32 26 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  38. A Novel Approach to the Analysis of Multiplexed Neural Codes

    Molano-Mazon, M., Onken, A., Safaai, H. & Panzeri, S., 23 Sep 2016. 1 p.

    Research output: Contribution to conferenceAbstract

  39. Concurrent Analysis of Neural Activity at Multiple Scales Using Mixed Vine Copulas

    Onken, A. & Panzeri, S., 23 Sep 2016. 1 p.

    Research output: Contribution to conferenceAbstract

  40. The Art of Detection

    Crowley, E. J. & Zisserman, A., 18 Sep 2016, Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I. Hua, G. & Jégou, H. (eds.). Cham: Springer International Publishing, p. 721-737 17 p. (Lecture Notes in Computer Science; vol. 9913).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  41. Towards Multimodal Deep Learning for Activity Recognition on Mobile Devices

    Radu, V., Lane, N. D., Bhattacharya, S., Mascolo, C., Marina, M. K. & Kawsar, F., 12 Sep 2016, Proceedings of the 2016 ACM International Joint Conference on Pervasive and Ubiquitous Computing: Adjunct. New York, NY, USA: ACM, p. 185-188 4 p. (UbiComp '16).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  42. An Experimental Research Design for Evaluating Energy Feedback

    Pullinger, M., Goddard, N. & Webb, J., 9 Sep 2016, The 4th European Conference on Behaviour and Energy Efficiency (Behave 2016). 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  43. A Bayesian Network Model for Interesting Itemsets

    Fowkes, J. & Sutton, C., 4 Sep 2016, The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery (ECML-PKDD 2016). Riva del Garda, Italy: Springer, Cham, p. 410-425 16 p. (Lecture Notes in Computer Science ; vol. 9852).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. Composite denoising autoencoders

    Geras, K. & Sutton, C., 4 Sep 2016, Machine Learning and Knowledge Discovery in Databases: European Conference on Machine Learning and Knowledge Discovery in Databases ECML PKDD 2016. Springer International Publishing, p. 681-696 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9851).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  45. Matching Models Across Abstraction Levels with Gaussian Processes

    Caravagna, G., Bortolussi, L. & Sanguinetti, G., 4 Sep 2016, Computational Methods in Systems Biology: 14th International Conference, CMSB 2016, Cambridge, UK, September 21-23, 2016, Proceedings. Bartocci, E., Lio, P. & Paoletti, N. (eds.). Cham: Springer International Publishing, p. 49-66 18 p. (Lecture Notes in Computer Science; vol. 9859).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Higher order methylation features for clustering and prediction in epigenomic studies

    Kapourani, A. & Sanguinetti, G., 1 Sep 2016, In : Bioinformatics. 33, 8, p. i405-i412 12 p.

    Research output: Contribution to journalArticle

  47. Neural Autoregressive Distribution Estimation

    Uria, B., Côté, M-A., Gregor, K., Murray, I. & Larochelle, H., 1 Sep 2016, In : Journal of Machine Learning Research. 17, 205, p. 1-37 37 p.

    Research output: Contribution to journalArticle

  48. A unified account of tilt illusions, association fields, and contour detection based on elastica

    Keemink, S. & van Rossum, M. C. W., Sep 2016, In : Vision Research. 126, p. 164–173 10 p.

    Research output: Contribution to journalArticle

  49. Bioluminescence-based approach to monitor neural activity in freely moving Drosophilalarvae

    Marescotti, M., Lagogiannis, K., Davies, W., Webb, B. & Armstrong, J. D., Sep 2016. 1 p.

    Research output: Contribution to conferencePoster

  50. Behavioral-state modulation of inhibition is context-dependent and cell type specific in mouse visual cortex

    Pakan, J. M., Lowe, S. C., Dylda, E., Keemink, S., Currie, S. P., Coutts, C. A. & Rochefort, N. L., 23 Aug 2016, In : eLIFE. 5

    Research output: Contribution to journalArticle

  51. Input-Output Non-Linear Dynamical Systems applied to Physiological Condition Monitoring

    Georgatzis, K., Williams, C. K. I. & Hawthorne, C., 20 Aug 2016, Proceedings of Machine Learning for Healthcare 2016: JMLR W&C Track Volume 56. Journal of Machine Learning Research: Workshop and Conference Proceedings, Vol. 56. 16 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  52. A Subsequence Interleaving Model for Sequential Pattern Mining

    Fowkes, J. & Sutton, C., 13 Aug 2016, KDD '16 Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. San Francisco , United States: ACM, p. 835-844 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  53. Policy learning for time-bounded reachability in Continuous-Time Markov Decision Processes via doubly-stochastic gradient ascent

    Bartocci, E., Bortolussi, L., Brázdil, T., Milios, D. & Sanguinetti, G., 3 Aug 2016, Quantitative Evaluation of Systems: 13th International Conference, QEST 2016, Quebec City, QC, Canada, August 23-25, 2016, Proceedings. Springer International Publishing, p. 244-259 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9826).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  54. Property-driven State-Space Coarsening for Continuous Time Markov Chains

    Michaelides, M., Milios, D., Hillston, J. & Sanguinetti, G., 3 Aug 2016, Quantitative Evaluation of Systems: 13th International Conference on Quantitative Evaluation of SysTems (QEST 2016). Quebec City, Canada: Springer International Publishing, p. 3-18 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9826).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  55. A Bayesian Approach to Parameter Inference in Queueing Networks

    Wang, W., Casale, G. & Sutton, C., Aug 2016, In : ACM Transactions on Modeling and Computer Simulation. 27, 1, 26 p., 2.

    Research output: Contribution to journalArticle

  56. Clustering with a Reject Option: Interactive Clustering as Bayesian Prior Elicitation

    Srivastava, A., Zou, J. & Sutton, C., 27 Jul 2016, Proceedings of the 2016 ICML Workshop on Human Interpretability in Machine Learning (WHI 2016). p. 16-20 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  57. More Semantics More Robust: Improving Android Malware Classifiers

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 18 Jul 2016, 9th ACM Conference on Security and Privacy in Wireless and Mobile Networks. Darmstadt, Germany: ACM, p. 147-158 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  58. Multidisciplinary research: should effort be the measure of success?

    Buswell, R. A., Webb, L., Mitchell, V. & Mackley, K. L., 13 Jul 2016, In : Building Research and Information. 45, 5, p. 539-555 17 p.

    Research output: Contribution to journalArticle

  59. Algorithmic methods to infer the evolutionary trajectories in cancer progression

    Caravagna, G., Graudenzi, A., Ramazzotti, D., Sanz-Pamplona, R., De Sano, L., Mauri, G., Moreno, V., Antoniotti, M. & Mishra, B., 12 Jul 2016, In : Proceedings of the National Academy of Sciences. 113, 28, p. E4025-E4034 10 p.

    Research output: Contribution to journalArticle

  60. Acoustic trauma slows AMPAR-mediated EPSCs in the auditory brainstem, reducing GluA4 subunit expression as a mechanism to rescue binaural function

    Pilati, N., Linley, D. M., Selvaskandan, H., Uchitel, O., Hennig, M. H., Kopp-Scheinpflug, C. & Forsythe, I. D., 1 Jul 2016, In : Journal of Physiology. 594, 13, p. 3683-3703 41 p.

    Research output: Contribution to journalArticle

  61. A robust data-driven macro-socioeconomic-energy model

    Roberts, S. H., Axon, C. J., Goddard, N. H., Foran, B. D. & Warr, B. S., Jul 2016, In : Sustainable Production and Consumption. 7, p. 16-36 21 p.

    Research output: Contribution to journalArticle

  62. Utilising disaggregated energy data in feedback designs – the IDEAL project

    Goddard, N., Pullinger, M., Webb, L., Farrow, E., Farrow, E., Kilgour, J., Morgan, E. & Moore, J., Jul 2016, TEDDINET Energy Feedback Symposium 2016. p. 74-77 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  63. A Convolutional Attention Network for Extreme Summarization of Source Code

    Allamanis, M., Peng, H. & Sutton, C., 24 Jun 2016, Proceedings of The 33rd International Conference on Machine Learning, PMLR. New York, United States: PMLR, Vol. 48. p. 2091-2100 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  64. Systems biological approach to Parkinson's disease: Uncovering effects of PD on the synapse

    Heil, K. F., Sorokina, O., Armstrong, J. D. & Hellgren-kotaleski, J., 19 Jun 2016.

    Research output: Contribution to conferenceAbstract

  65. TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

    De Sano, L., Caravagna, G., Ramazzotti, D., Graudenzi, A., Mauri, G., Mishra, B. & Antoniotti, M., 15 Jun 2016, In : Bioinformatics. 32, 12, p. 1911-1913 3 p.

    Research output: Contribution to journalArticle

  66. Carbon monoxide gas is not inert, but global, in its consequences for bacterial gene expression, iron acquisition and antibiotic resistance

    Wareham, L. K., Begg, R., Jesse, H. E., Van Beilen, J., Ali, S., Svistunenko, D., McLean, S., Hellingwerf, K., Sanguinetti, G. & Poole, R. K., 13 Jun 2016, In : Antioxidants and Redox Signaling. 24, 17, p. 1013-1028 16 p.

    Research output: Contribution to journalArticle

  67. Analysis of individual mouse activity in group housed animals of different inbred strains using a novel automated home cage analysis system.

    Bains, R. S., Cater, H. L., Sillito, R. R., Chartsias, A., Sneddon, D., Concas, D., Keskivali-Bond, P., Lukins, T. C., Wells, S., Acevedo Arozena, A., Nolan, P. M. & Armstrong, J. D., 10 Jun 2016, In : Frontiers in behavioral neuroscience. 10, 106, 22 p.

    Research output: Contribution to journalArticle

  68. On Robust Malware Classifiers by Verifying Unwanted Behaviours

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., Jun 2016, Integrated Formal Methods: 12th International Conference, IFM 2016, Reykjavik, Iceland, June 1-5, 2016, Proceedings. Springer International Publishing, p. 326-341 15 p. (Lecture Notes in Computer Science; vol. 9681).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  69. My Text in Your Handwriting

    Haines, T. S. F., Mac Aodha, O. & Brostow, G. J., 31 May 2016, In : ACM Transactions on Graphics. 35, 3, p. 26:1-26:18 18 p., 26.

    Research output: Contribution to journalArticle

  70. Analysis of compound heterozygotes reveals that the mouse floxed Pax6 tm1Ued allele produces abnormal eye phenotypes

    Dorà, N. J., Crookshanks, A. J. F., Leung, K. K. Y., Simpson, T., Mason, J., Price, D. & West, J., 30 May 2016, In : Transgenic Research. p. 1-14 14 p.

    Research output: Contribution to journalArticle

  71. Cox process representation and inference for stochastic reaction-diffusion processes

    Schnoerr, D., Grima, R. & Sanguinetti, G., 25 May 2016, In : Nature Communications. 7, p. 1-11 11 p., 11729.

    Research output: Contribution to journalArticle

  72. Tracking of Individual Mice in a Social Setting Using Video Tracking Combined with RFID tags

    Armstrong, J. D., Acevedo-Arozena, A., Bains, R. S., Cater, H., Chartsias, A., Nolan, P., Sneddon, D., Sillito, R. & Wells, S., 25 May 2016, Proceedings of Measuring Behavior 2016: 10th International Conference on Methods and Techniques in Behavioral Research. Spink, A. J., Riedel, G., Zhou, L., Teekens, L., Albatal, R. & Gurrin, C. (eds.). Dublin, Ireland, p. 413-416 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  73. Spike-Based Bayesian-Hebbian Learning of Temporal Sequences

    Tully, P. J., Lindén, H., Hennig, M. H. & Lansner, A., 23 May 2016, In : PLoS Computational Biology. 12, 5, 35 p., e1004954.

    Research output: Contribution to journalArticle

  74. Functional characterisation of human synaptic genes expressed in the Drosophila brain

    Zografos, L., Tang, J., Hesse, F., Wanker, E. E., Li, K. W., Smit, A. B., Davies, R. W. & Armstrong, J. D., 15 May 2016, In : Biology Open. 5, 5, p. 662-667 6 p.

    Research output: Contribution to journalArticle

  75. Network of Epistatic Interactions Within a Yeast snoRNA

    Puchta, O., Cseke, B., Czaja, H., Tollervey, D., Sanguinetti, G. & Kudla, G., 13 May 2016, In : Science.

    Research output: Contribution to journalArticle

  76. The impact of host metapopulation structure on the population genetics of colonizing bacteria

    Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., Schaik, W. V., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

    Research output: Contribution to journalArticle

  77. The Role of Air Motion for Providing Thermal Comfort in Residential / Mixed Mode Buildings: a Multi-partner Global Innovation Initiative (GII) Project

    Loveday, D. L., Webb, L., Verma, P., Cook, M. J., Rawal, R., Vadodaria, K., Cropper, P., Brager, G., Zhang, H., Foldvary, V., Arens, E., Babich, F., Cobb, R., Ariffin, R., Kaam, S. & Toledo, L., 4 May 2016, Proceedings of 9th Windsor Conference: Making Comfort Relevant. Network for Comfort and Energy Use in Buildings, p. 947-962 16 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  78. Modelling-based experiment retrieval: A case study with gene expression clustering

    Blomstedt, P., Dutta, R., Seth, S., Brazma, A. & Kaski, S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1388-1394 7 p.

    Research output: Contribution to journalArticle

  79. Pseudo-Marginal Slice Sampling

    Murray, I. & Graham, M., May 2016, Proceedings of the 19th International Conference on Artificial Intelligence and Statistics 2016. Cadiz, Spain: PMLR, Vol. 51. p. 911-919 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  80. TASSAL: Autofolding for Source Code Summarization

    Fowkes, J., Chanthirasegaran, P., Ranca, R., Allamanis, M., Lapata, M. & Sutton, C., May 2016, ICSE '16 Proceedings of the 38th International Conference on Software Engineering Companion. ACM, p. 649-652 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  81. A Text-Mining Approach to Explain Unwanted Behaviours

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 18 Apr 2016, EuroSec '16 Proceedings of the 9th European Workshop on System Security . ACM, 6 p. 4

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  82. Explaining Unwanted Behaviours in Context

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 6 Apr 2016, Proceedings of the 1st International Workshop on Innovations in Mobile Privacy and Security co-located with the International Symposium on Engineering Secure Software and Systems (ESSoS 2016). CEUR-WS.org, p. 38-45 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  83. qpMerge: Merging different peptide isoforms using a motif centric strategy

    Hindle, M. M., Le Bihan, T., Krahmer, J., Martin, S. F., Noordally, Z. B., Simpson, T. I. & Millar, A. J., 5 Apr 2016, (Submitted) bioRxiv, at Cold Spring Harbor Laboratory, 9 p.

    Research output: Working paper

  84. Smoothed model checking for uncertain Continuous-Time Markov Chains

    Bortolussi, L., Milios, D. & Sanguinetti, G., Apr 2016, In : Information and Computation. 247, p. 235-253 24 p.

    Research output: Contribution to journalArticle

  85. Space-by-time decomposition for single-trial decoding of M/EEG activity

    Delis, I., Onken, A., Schyns, P. G., Panzeri, S. & Philiastides, M. G., 24 Mar 2016, In : NeuroImage. 133, Supplement C, p. 504-515 12 p.

    Research output: Contribution to journalArticle

  86. CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress

    Holyoake, L. V., Hunt, S., Sanguinetti, G., Cook, G. M., Howard, M. J., Rowe, M. L., Poole, R. K. & Shepherd, M., 15 Mar 2016, In : Biochemical Journal. 473, 6, p. 693-701 9 p.

    Research output: Contribution to journalArticle

  87. On the Identifiability of Transmission Dynamic Models for Infectious Diseases

    Lintusaari, J., Gutmann, M. U., Kaski, S. & Corander, J., 1 Mar 2016, In : Genetics. 202, 3, p. 911-918 8 p.

    Research output: Contribution to journalArticle

  88. Fluid consumption and taste novelty determines transcription temporal dynamics in the gustatory cortex

    Inberg, S., Jacob, E., Elkobi, A., Edry, E., Rappaport, A., Simpson, T. I., Armstrong, J. D., Shomron, N., Pasmanik-Chor, M. & Rosenblum, K., 9 Feb 2016, In : Molecular Brain. 9, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  89. Blending LSTMs into CNNs

    Geras, K. J., Mohamed, A., Caruana, R., Urban, G., Wang, S., Aslan, Ö., Philipose, M., Richardson, M. & Sutton, C., 4 Feb 2016, (Accepted/In press) International Conference on Learning Representations (ICLR Workshop). 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  90. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

    Paroni, A., Graudenzi, A., Caravagna, G., Damiani, C., Mauri, G. & Antoniotti, M., 4 Feb 2016, In : BMC Bioinformatics. 17, 64, 12 p.

    Research output: Contribution to journalArticle

  91. Censoring Representations with an Adversary

    Edwards, H. & Storkey, A., 4 Feb 2016, (Accepted/In press) International Conference in Learning Representations (ICLR2016). 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  92. Expression of mRNA Encoding Mcu and Other Mitochondrial Calcium Regulatory Genes Depends on Cell Type, Neuronal Subtype, and Ca2+ Signaling

    Work enabled by Edinburgh Genomics, 2 Feb 2016, In : PLoS ONE. 11, 2, 16 p., 0148164.

    Research output: Contribution to journalArticle

  93. Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting

    Pernet, C., Krzysztof, G., Job, D., Rodriguez Gonzalez, D., Storkey, A., Whittle, I. & Wardlaw, J., Feb 2016, In : International journal of medical informatics. 86, p. 37-42 6 p.

    Research output: Contribution to journalArticle

  94. Stochastic Parallel Block Coordinate Descent for Large-scale Saddle Point Problems

    Zhu, Z. & Storkey, A. J., Feb 2016, Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence. AAAI Press, p. 2429-2534 106 p. (AAAI'16).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  95. Improved Functional Enrichment Analysis of Biological Networks using Scalable Modularity Based Clustering

    Mclean, C., He, X., Simpson, I. T. & Armstrong, D. J., 31 Jan 2016, In : Journal of Proteomics & Bioinformatics. 9, 1, p. 9-18 10 p.

    Research output: Contribution to journalArticle

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