Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. Article › Research › Peer-reviewed
  2. Building a mechanistic model of the development and function of the primary visual cortex

    Bednar, J. A., Sep 2012, In : Journal of Physiology-Paris. 106, 5-6, p. 194-211 18 p.

    Research output: Contribution to journalArticle

  3. Building the Central Complex in Drosophila: The Generation and Development of Distinct Neural Subsets

    Young, J. M. & Armstrong, J. D., 1 May 2010, In : Journal of Comparative Neurology. 518, 9, p. 1525-1541 17 p.

    Research output: Contribution to journalArticle

  4. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

    Paroni, A., Graudenzi, A., Caravagna, G., Damiani, C., Mauri, G. & Antoniotti, M., 4 Feb 2016, In : BMC Bioinformatics. 17, 64, 12 p.

    Research output: Contribution to journalArticle

  5. CAPRI: efficient inference of cancer progression models from cross-sectional data

    Ramazzotti, D., Caravagna, G., Olde Loohuis, L., Graudenzi, A., Korsunsky, I., Mauri, G., Antoniotti, M. & Mishra, B., 15 Sep 2015, In : Bioinformatics. 31, 18, p. 3016-26 11 p.

    Research output: Contribution to journalArticle

  6. CO-Releasing Molecules Have Nonheme Targets in Bacteria: Transcriptomic, mathematical Modeling and Biochemical Analyses of CORM-3 [Ru(CO) 3 Cl (glycinate)] Actions on a Heme-Deficient Mutant of Escherichia coli

    Wilson, J. L., Wareham, L. K., Mclean, S., Begg, R., Greaves, S., Mann, B. E., Sanguinetti, G. & Poole, R. K., 25 Jun 2015, In : Antioxidants and Redox Signaling. 23, 2, p. 148-162 15 p.

    Research output: Contribution to journalArticle

  7. Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation.

    Liepe, J., Taylor, H., Barnes, C. P., Huvet, M., Bugeon, L., Thorne, T., Lamb, J. R., Dallman, M. J. & Stumpf, M. P. H., 1 Mar 2012, In : Integrative Biology. 4, 3, p. 335-345 11 p.

    Research output: Contribution to journalArticle

  8. Carbon monoxide gas is not inert, but global, in its consequences for bacterial gene expression, iron acquisition and antibiotic resistance

    Wareham, L. K., Begg, R., Jesse, H. E., Van Beilen, J., Ali, S., Svistunenko, D., McLean, S., Hellingwerf, K., Sanguinetti, G. & Poole, R. K., 13 Jun 2016, In : Antioxidants and Redox Signaling. 24, 17, p. 1013-1028 16 p.

    Research output: Contribution to journalArticle

  9. Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators

    Davidge, K. S., Sanguinetti, G., Yee, C. H., Cox, A. G., McLeod, C. W., Monk, C. E., Mann, B. E., Motterlini, R. & Poole, R. K., 13 Feb 2009, In : Journal of Biological Chemistry. p. 4516-4524 9 p.

    Research output: Contribution to journalArticle

  10. Cascaded Multilevel Inverter With Regeneration Capability and Reduced Number of Switches

    Lezana, P., Rodriguez, J. & Oyarzun, D. A., 3 Mar 2008, In : IEEE Transactions on Industrial Electronics. 55, 3, p. 1059-1066 8 p.

    Research output: Contribution to journalArticle

  11. Categorial mirror symmetry for K3 surfaces

    Bartocci, C., Bruzzo, U. & Sanguinetti, G., Oct 1999, In : Communications in Mathematical Physics. 206, 2, p. 265-272 8 p.

    Research output: Contribution to journalArticle

  12. Categorical encoding of decision variables in orbitofrontal cortex

    Onken, A., Xie, J., Panzeri, S. & Padoa-Schioppa, C., 14 Oct 2019, In : PLoS Computational Biology. 15, 10, 27 p., e1006667.

    Research output: Contribution to journalArticle

  13. Cellular mechanisms underlying behavioral state-dependent bidirectional modulation of motor cortex output

    Schiemann, J., Puggioni, P., Pelko, M., Domanski, A., Van Rossum, M. & Duguid, I., 26 May 2015, In : Cell Reports. 11, 8, p. 1319–1330

    Research output: Contribution to journalArticle

  14. Changing expectations about speed alters perceived motion direction

    Sotiropoulos, G., Seitz, A. R. & Series, P., 8 Nov 2011, In : Current Biology. 21, 21, p. R883-R884 2 p.

    Research output: Contribution to journalArticle

  15. Changing how Earth System Modelling is done to provide more useful information for decision making, science and society

    Smith, M. J., Palmer, P., Purves, D. W., Vanderwel, M. C., Lyutsarev, V., Calderhead, B., Joppa, L. N., Bishop, C. & Emmott, S., 2014, In : Bulletin of the American Meteorological Society. 95, 9

    Research output: Contribution to journalArticle

  16. Charles Bonnet Syndrome: Evidence for a Generative Model in the Cortex?

    Reichert, D. P., Seriès, P., Storkey, A. J. & Gutkin, B. S. (ed.), 18 Jul 2013, In : PLoS Computational Biology. 9, 7, 19 p., e1003134.

    Research output: Contribution to journalArticle

  17. Circadian control of mouse heart rate and blood pressure by the suprachiasmatic nuclei: behavioral effects are more significant than direct outputs

    Sheward, W. J., Naylor, E., Knowles-Barley, S., Armstrong, J. D., Brooker, G. A., Seckl, J. R., Turek, F. W., Holmes, M. C., Zee, P. C. & Harmar, A. J., 22 Mar 2010, In : PLoS ONE. 5, 3, 9 p., e9783.

    Research output: Contribution to journalArticle

  18. Classification of arterial plaque by spectral analysis of in vitro radio frequency intravascular ultrasound data

    Watson, R. J., McLean, C. C., Moore, M. P., Spencer, T., Salter, D. M., Anderson, T., Fox, K. A. A. & McDicken, W. N., Jan 2000, In : Ultrasound in Medicine & Biology. 26, 1, p. 73-80 8 p.

    Research output: Contribution to journalArticle

  19. Classifying chemical mode of action using gene networks and machine learning: A case study with the herbicide linuron

    Ornostay, A., Cowie, A. M., Hindle, M., Baker, C. J. O. & Martyniuk, C. J., 12 Sep 2013, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 8, 4, p. 263-274 12 p.

    Research output: Contribution to journalArticle

  20. Cleaning sky survey databases using Hough transform and renewal string approaches

    Storkey, AJ., Hambly, NC., Williams, CKI. & Mann, RG., 1 Jan 2004, In : Monthly Notices of the Royal Astronomical Society. 347, 1, p. 36-51 16 p.

    Research output: Contribution to journalArticle

  21. Clustered Coding Variants in the Glutamate Receptor Complexes of Individuals with Schizophrenia and Bipolar Disorder

    Frank, R. A. W., McRae, A. F., Pocklington, A. J., Van De Lagemaat, L., Navarro, P., Croning, M. D. R., Komiyama, N. H., Bradley, S. J., Challiss, R. A. J., Armstrong, J. D., Finn, R. D., Malloy, M. P., MacLean, A. W., Harris, S. E., Starr, J., Bhaskar, S. S., Howard, E. K., Hunt, S. E., Coffey, A. J., Ranganath, V. & 7 others, Deloukas, P., Rogers, J., Muir, W. J., Deary, I. J., Blackwood, D. H., Visscher, P. M. & Grant, S. G. N., 29 Apr 2011, In : PLoS ONE. 6, 4, p. - 9 p., e19011.

    Research output: Contribution to journalArticle

  22. Co-Designing a Device for Behaviour-Based Energy Reduction in a Large Organisation

    Morgan, E., Webb, L., Carter, C. & Goddard, N., Nov 2018, In : Proceedings of the ACM on Human-Computer Interaction. 2, CSCW, p. 125:1-125:23 23 p., 125.

    Research output: Contribution to journalArticle

  23. CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

    Rubinacci, S., Graudenzi, A., Caravagna, G., Mauri, G., Osborne, J., Pitt-Francis, J. & Antoniotti, M., 1 Sep 2015, In : Cancer Informatics. p. 53-65 13 p.

    Research output: Contribution to journalArticle

  24. Combinatorial stresses kill pathogenic Candida species

    Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H. L., Ingram, P., McDonagh, A., De Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E. & 10 others, Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K. & Brown, A. J. P., 1 Oct 2012, In : Medical Mycology. 50, 7, p. 699-709 11 p.

    Research output: Contribution to journalArticle

  25. Combining belief networks and neural networks for scene segmentation

    Feng, X., Williams, C. K. I. & Felderhof, S. N., 1 Apr 2002, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 24, 4, p. 467-483 17 p.

    Research output: Contribution to journalArticle

  26. Combining tree-based and dynamical systems for the inference of gene regulatory networks

    Huynh-Thu, V. A. & Sanguinetti, G., 15 May 2015, In : Bioinformatics. 31, 10, p. 1614-1622 9 p.

    Research output: Contribution to journalArticle

  27. Combining two methods of recognizing hand-printed digits

    E. Hinton, G., Williams, C. K. I. & Revow, M. D., 1992, In : Artificial Neural Networks. 2, p. 53-60 8 p.

    Research output: Contribution to journalArticle

  28. Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus

    Su, Z., Gay, L. J., Strange, A., Palles, C., Band, G., Whiteman, D. C., Lescai, F., Langford, C., Nanji, M., Edkins, S., Van Der Winkel, A., Levine, D., Sasieni, P., Bellenguez, C., Howarth, K., Freeman, C., Trudgill, N., Tucker, A. T., Pirinen, M., Peppelenbosch, M. P. & 124 others, Van Der Laan, L. J. W., Kuipers, E. J., Drenth, J. P. H., Peters, W. H., Reynolds, J. V., Kelleher, D. P., Mcmanus, R., Grabsch, H., Prenen, H., Bisschops, R., Krishnadath, K., Siersema, P. D., Van Baal, J. W. P. M., Middleton, M., Petty, R., Gillies, R., Burch, N., Bhandari, P., Paterson, S., Edwards, C., Penman, I., Vaidya, K., Ang, Y., Murray, I., Patel, P., Ye, W., Mullins, P., Wu, A. H., Bird, N. C., Dallal, H., Shaheen, N. J., Murray, L. J., Koss, K., Bernstein, L., Romero, Y., Hardie, L. J., Zhang, R., Winter, H., Corley, D. A., Panter, S., Risch, H. A., Reid, B. J., Sargeant, I., Gammon, M. D., Smart, H., Dhar, A., Mcmurtry, H., Ali, H., Liu, G., Casson, A. G., Chow, W., Rutter, M., Tawil, A., Morris, D., Nwokolo, C., Isaacs, P., Rodgers, C., Ragunath, K., Macdonald, C., Haigh, C., Monk, D., Davies, G., Wajed, S., Johnston, D., Gibbons, M., Cullen, S., Church, N., Langley, R., Griffin, M., Alderson, D., Deloukas, P., Hunt, S. E., Gray, E., Dronov, S., Potter, S. C., Tashakkori-ghanbaria, A., Anderson, M., Brooks, C., Blackwell, J. M., Bramon, E., Brown, M. A., Casas, J. P., Corvin, A., Duncanson, A., Markus, H. S., Mathew, C. G., Palmer, C. N. A., Plomin, R., Rautanen, A., Sawcer, S. J., Trembath, R. C., Viswanathan, A. C., Wood, N., Trynka, G., Wijmenga, C., Cazier, J., Atherfold, P., Nicholson, A. M., Gellatly, N. L., Glancy, D., Cooper, S. C., Cunningham, D., Lind, T., Hapeshi, J., Ferry, D., Rathbone, B., Brown, J., Love, S., Attwood, S., Macgregor, S., Watson, P., Sanders, S., Ek, W., Harrison, R. F., Moayyedi, P., De Caestecker, J., Barr, H., Stupka, E., Vaughan, T. L., Peltonen, L., Spencer, C. C. A., Tomlinson, I., Donnelly, P. & Jankowski, J. A. Z., 1 Oct 2012, In : Nature Genetics. 44, 10, p. 1131-1136

    Research output: Contribution to journalArticle

  29. Comparing Bayesian Neural Network Algorithms for Classifying Segmented Outdoor Images

    Vivarelli, F. & Williams, C. K. I., 1 May 2001, In : Neural Networks. 14, 4-5, p. 427-437 11 p.

    Research output: Contribution to journalArticle

  30. Comparison of different moment-closure approximations for stochastic chemical kinetics

    Schnoerr, D., Sanguinetti, G. & Grima, R., 14 Nov 2015, In : The Journal of Chemical Physics. 143, 18, 17 p., 185101.

    Research output: Contribution to journalArticle

  31. Compensations for Diminished Terminal Oxidase Activity in Escherichia coli: Cytochrome bd-II-Mediated Respiration and Glutamate Metabolism

    Shepherd, M., Sanguinetti, G., Cook, G. M. & Poole, R. K., 11 Jun 2010, In : Journal of Biological Chemistry. 285, 24, p. 18464-18472 9 p.

    Research output: Contribution to journalArticle

  32. Complexity Leadership in Learning Analytics: Drivers, Challenges, and Opportunities

    Tsai, Y-S., Poquet, O., Gašević, D., Dawson, S. & Pardo, A., 21 Oct 2019, In : British Journal of Educational Technology. 50, 6, p. 2839–2854

    Research output: Contribution to journalArticle

  33. Complexity and specificity of experimentally-induced expectations in motion perception

    Chalk, M., Seitz, A. R., Seriès, P. & Gekas, N., Mar 2013, In : Journal of Vision. 13, 4, 8.

    Research output: Contribution to journalArticle

  34. Computation With Infinite Neural Networks

    Williams, C. K. I., 1 Jul 1997, In : Neural Computation. 10, 5, p. 1203-1216 14 p.

    Research output: Contribution to journalArticle

  35. Computation with populations codes in layered networks of integrate-and-fire neurons

    van Rossum, M. C. W. & Renart, A., 2004, In : Neurocomputing. 58-60, 0, p. 265 - 270

    Research output: Contribution to journalArticle

  36. Computational modelling of memory retention from synapse to behaviour

    van Rossum, M. C. W. & Shippi, M., 12 Mar 2013, In : Journal of Statistical Mechanics: Theory and Experiment. 2013, 03, 13 p., P03007.

    Research output: Contribution to journalArticle

  37. Computers and Octi: Report from the 2001 Tournament

    Sutton, C., Jun 2002, In : ICGA Journal. 25, 2, p. 105-112

    Research output: Contribution to journalArticle

  38. Conditioned Task-set Competition: Neural Mechanisms of Emotional Interference in Depression

    Series, P., Apr 2017, In : Cognitive, Affective & Behavioral Neuroscience. 17, 2, p. 1-21 22 p.

    Research output: Contribution to journalArticle

  39. Confidence-based integrated reweighting model of task-difficulty explains location-based specificity in perceptual learning

    Talluri, B. C., Hung, S., Seitz, A. R. & Seriès, P., 29 Dec 2015, In : Journal of Vision. 15, 10, 12 p., 17.

    Research output: Contribution to journalArticle

  40. Consequences of selecting technology pathways on cumulative carbon dioxide emissions for the United Kingdom Applied Energy

    Roberts, S. H., Foran, B. D., Axon, C. J., Warr, B. S. & Goddard, N., 28 Jun 2018, In : Applied energy. 228, p. 409-425 17 p.

    Research output: Contribution to journalArticle

  41. Consolidation and translation regulation

    Gal-Ben-Ari, S., Kenney, J. W., Ounalla-Saad, H., Taha, E., David, O., Levitan, D., Gildish, I., Panja, D., Pai, B., Wibrand, K., Simpson, T. I., Proud, C. G., Bramham, C. R., Armstrong, J. D. & Rosenblum, K., Sep 2012, In : Learning and Memory. 19, 9, p. 410-22 13 p.

    Research output: Contribution to journalArticle

  42. Contrast dependency and prior expectations in human speed perception

    Sotiropoulos, G., Seitz, A. R. & Series, P., 2014, In : Vision Research. 97, 0, p. 16-23 8 p.

    Research output: Contribution to journalArticle

  43. Contribution of LFP dynamics to single-neuron spiking variability in motor cortex during movement execution

    Rule, M., Vargas-Irwin, C., Donoghue, J. P. & Truccolo, W., 22 Jun 2015, In : Frontiers in Systems Neuroscience. 9, 16 p., 89.

    Research output: Contribution to journalArticle

  44. Controlled overexpression of Pax6 in vivo negatively autoregulates the Pax6 locus, causing cell-autonomous defects of late cortical progenitor proliferation with little effect on cortical arealization

    Manuel, M., Georgala, P. A., Carr, C. B., Chanas, S., Kleinjan, D. A., Martynoga, B., Mason, J. O., Molinek, M., Pinson, J., Pratt, T., Quinn, J. C., Simpson, I., Tyas, D. A., van Heyningen, V., West, J. D. & Price, D. J., 2007, In : Development. 134, 3, p. 545-55 11 p.

    Research output: Contribution to journalArticle

  45. Correlated topographic analysis: estimating an ordering of correlated components

    Sasaki, H., Gutmann, M. U., Shouno, H. & Hyvärinen, A., 2013, In : Machine Learning. 92, 2-3, p. 285-317 33 p.

    Research output: Contribution to journalArticle

  46. Correlation based learning from spike timing dependent plasticity

    van Rossum, M. C. W. & Turrigiano, G. G., 2001, In : Neurocomputing. 38 - 40, p. 409 - 415 7 p.

    Research output: Contribution to journalArticle

  47. Cox process representation and inference for stochastic reaction-diffusion processes

    Schnoerr, D., Grima, R. & Sanguinetti, G., 25 May 2016, In : Nature Communications. 7, p. 1-11 11 p., 11729.

    Research output: Contribution to journalArticle

  48. Creating, documenting and sharing network models

    Crook, S. M., Bednar, J. A., Berger, S., Cannon, R., Davison, A. P., Djurfeldt, M., Eppler, J., Kriener, B., Furber, S., Graham, B., Plesser, H. E., Schwabe, L., Smith, L., Steuber, V. & van Albada, S., 2012, In : Network: Computation in Neural Systems. 23, 4, p. 131-149 19 p.

    Research output: Contribution to journalArticle

  49. Cumulative signal transmission in nonlinear reaction-diffusion networks

    Oyarzún, D. A., López-Caamal, F., Garcia, M. R., Middleton, R. H. & Weiße, A. Y., 5 Aug 2013, In : PLoS ONE. 8, 5

    Research output: Contribution to journalArticle

  50. Curvature–driven smoothing: a learning algorithm for feedforward networks

    Bishop, C., 1993, In : IEEE Transactions on Neural Networks. 4, 5, p. 882-884 3 p.

    Research output: Contribution to journalArticle

  51. CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress

    Holyoake, L. V., Hunt, S., Sanguinetti, G., Cook, G. M., Howard, M. J., Rowe, M. L., Poole, R. K. & Shepherd, M., 15 Mar 2016, In : Biochemical Journal. 473, 6, p. 693-701 9 p.

    Research output: Contribution to journalArticle

  52. DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks

    Lukauskas, S., Visintainer, R., Sanguinetti, G. & Schweikert, G., 13 Dec 2016, In : BMC Bioinformatics. 17, 16, 15 p.

    Research output: Contribution to journalArticle

  53. Dendritic Spine Dynamics Regulate the Long-Term Stability of Synaptic Plasticity

    O'Donnell, C., Nolan, M. & Van Rossum, M., 9 Nov 2011, In : Journal of Neuroscience. 31, 45, p. 16142-16156 15 p.

    Research output: Contribution to journalArticle

  54. Density of states of disordered systems

    van Rossum, M., Nieuwenhuizen, T. M., Hofstetter, E. & Schreiber, M., 1 May 1994, In : Physical Review B: Condensed Matter and Materials Physics. 49, p. 13377-13382 6 p.

    Research output: Contribution to journalArticle

  55. Derivative processes for modelling metabolic fluxes

    Žurauskiene, J., Kirk, P., Thorne, T., Pinney, J. & Stumpf, M., 1 Jul 2014, In : Bioinformatics. 30, 13, p. 1892-1898 7 p.

    Research output: Contribution to journalArticle

  56. Design of a bistable switch to control cellular uptake

    Oyarzun, D. & Madalena, C., 6 Dec 2015, In : Journal of the Royal Society Interface. 12, 113, 15 p., 20150618.

    Research output: Contribution to journalArticle

  57. Design of the TRONCO BioConductor Package for TRanslational ONCOlogy

    Antoniotti, M., Caravagna, G., De Sano, L., Graudenzi, A., Mauri, G., Mishra, B. & Ramazzotti, D., 21 Oct 2016, In : The R Journal. 8, 2, p. 39-59 21 p.

    Research output: Contribution to journalArticle

  58. Detecting and Quantifying Topography in Neural Maps

    Yarrow, S., Seitz, A. R., Seriès, P. & Razak, K., 5 Feb 2014, In : PLoS Neglected Tropical Diseases. 9, 2, 14 p., e87178.

    Research output: Contribution to journalArticle

  59. Detecting repeated cancer evolution from multi-region tumor sequencing data

    Caravagna, G., Giarratano, Y., Ramazzotti, D., Tomlinson, I., Graham, T. A., Sanguinetti, G. & Sottoriva, A., 31 Aug 2018, In : Nature Methods. 15, p. 707-714 8 p.

    Research output: Contribution to journalArticle

  60. Developing Complex Systems Using Evolved Pattern Generators

    Valsalam, V. K., Bednar, J. A. & Miikkulainen, R., 2007, In : IEEE Transactions on Evolutionary Computation. p. 181-198 18 p.

    Research output: Contribution to journalArticle

  61. Development of maps of simple and complex cells in the primary visual cortex

    Antolik, J. & Bednar, J. A., 2011, In : Frontiers in Computational Neuroscience. 5, 17

    Research output: Contribution to journalArticle

  62. Development of the ASHRAE Global Thermal Comfort Database II

    Földváry, V., Cheung, T., Zhang, H., de Dear, R., Parkinson, T., Arens, E., Chun, C., Schiavon, S., Luo, M., Brager, G., Li, P., Kaam, S., Adebamowo, M. A., Andamon, M. M., Babich, F., Bouden, C., Bukovianska, H., Candido, C., Cao, B., Carlucci, S. & 44 others, Cheong, D. K. W., Choi, J-H., Cook, M., Cropper, P., Deuble, M., Heidari, S., Indraganti, M., Jin, Q., Kim, H., Kim, J., Konis, K., Singh, M. K., Kwok, A., Lamberts, R., Loveday, D., Langevin, J., Manu, S., Moosmann, C., Nicol, F., Ooka, R., Oseland, N. A., Pagliano, L., Petráš, D., Rawal, R., Romero, R., Sekhar, C., Schweiker, M., Tartarini, F., Tanabe, S., Tham, K. W., Teli, D., Toftum, J., Toledo, L., Tsuzuki, K., De Vecchi, R., Wagner, A., Wang, Z., Wallbaum, H., Webb, L., Yang, L., Zhu, Y., Zhai, Y., Zhang, Y. & Zhou, X., Sep 2018, In : Building and Environment. 142, p. 502-512 11 p.

    Research output: Contribution to journalArticle

  63. Developmental Organisation of Central Neurons in the Adult Drosophila Ventral Nervous System

    Shepherd, D., Sahota, V., Court, R., Williams, D. & Truman, J., 28 Mar 2019, In : Journal of Comparative Neurology. 72 p.

    Research output: Contribution to journalArticle

  64. Developmental Profiles of Eczema, Wheeze, and Rhinitis: Two Population-Based Birth Cohort Studies

    Belgrave, D. C. M., Granell, R., Simpson, A., Guiver, J., Bishop, C., Buchan, I. E., Henderson, J. & Custovic, A., 1 Oct 2014, In : PLoS ONE. 11, 10, 14 p., e1001748.

    Research output: Contribution to journalArticle

  65. Developments of the generative topographic mapping

    Bishop, C. M., Svensén, M. & Williams, C. K. I., Nov 1998, In : Neurocomputing. 21, 1–3, p. 203-224 22 p.

    Research output: Contribution to journalArticle

  66. Deviations from the Gaussian distribution of mesoscopic conductance fluctuations

    van Rossum, M., Lerner, I. V., Altshuler, B. L. & Nieuwenhuizen, T. M., 1 Feb 1997, In : Physical Review B. 55, p. 4710-4716 7 p.

    Research output: Contribution to journalArticle

  67. Dietary Salt Levels Affect Salt Preference and Learning in Larval Drosophila

    Russell, C., Wessnitzer, J., Young, J. M., Armstrong, J. D. & Webb, B., 1 Jun 2011, In : PLoS ONE. 6, 6, 8 p., e20100.

    Research output: Contribution to journalArticle

  68. Differential vergence movements in reading Chinese and English: Greater fixation-initial binocular disparity is advantageous in reading the denser orthography

    Hsiao, Y., Shillcock, R., Obregón, M., Kreiner, H., Roberts, M. A. J. & McDonald, S., 11 Jul 2017, In : Quarterly Journal of Experimental Psychology. p. 1-33 33 p.

    Research output: Contribution to journalArticle

  69. Direct Learning of Sparse Changes in Markov Networks by Density Ratio Estimation

    Liu, S., Quinn, J. A., Gutmann, M. U., Suzuki, T. & Sugiyama, M., 1 Mar 2014, In : Neural Computation. 26, 6, p. 1169-1197 29 p.

    Research output: Contribution to journalArticle

  70. Disruption of early events in thalamocortical tract formation in mice lacking the transcription factors Pax6 or Foxg1

    Pratt, T., Quinn, J. C., Simpson, T. I., West, J. D., Mason, J. O. & Price, D. J., 2002, In : Journal of Neuroscience. 22, 19, p. 8523-31 9 p.

    Research output: Contribution to journalArticle

  71. Dissecting Magnetar Variability with Bayesian Hierarchical Models

    Huppenkothen, D., Brewer, B. J., Hogg, D. W., Murray, I., Frean, M., Elenbaas, C., Watts, A. L., Levin, Y., Van Der Horst, A. J. & Kouveliotou, C., 1 Sep 2015, In : Astrophysical Journal. 810, 1, 21 p.

    Research output: Contribution to journalArticle

  72. Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons

    Chapelle, J., Sorokina, O., McLean, C., Salemme, V., Alfieri, A., Angelini, C., Morellato, A., Adrait, A., Menna, E., Matteoli, M., Couté, Y., Ala, U., Turco, E., Defilippi, P. & Armstrong, J. D., 15 Oct 2019, In : Frontiers in Cell and Developmental Biology. 7, 19 p., 222.

    Research output: Contribution to journalArticle

  73. Dissociation between sustained single-neuron spiking β-rhythmicity and transient β-LFP oscillations in primate motor cortex

    Rule, M. E., Vargas-Irwin, C. E., Donoghue, J. P. & Truccolo, W., 18 Jan 2017, In : Journal of Neurophysiology. p. 1-52 52 p.

    Research output: Contribution to journalArticle

  74. Distributed inference and query processing for RFID tracking and monitoring

    Cao, Z., Sutton, C., Diao, Y. & Shenoy, P., Feb 2011, In : Proceedings of the VLDB Endowment (PVLDB). 4, 5, p. 326-337 12 p.

    Research output: Contribution to journalArticle

  75. Double objective optimal multivariable ripple-free deadbeat control

    Salgado, M. E. & Oyarzún, D. A., 2007, In : International journal of control. 80, 5, p. 763-773 11 p.

    Research output: Contribution to journalArticle

  76. Drosophila circadian rhythms in semi-natural environments; the summer afternoon component is not an artifact and requires TrpA1 channels

    Green, E. W., O'Callaghan, E. K., Hansen, C. N., Bastianello, S., Bhutani, S., Vanin, S., Armstrong, J. D., Costa, R. & Kyriacou, C. P., 2015, In : Proceedings of the National Academy of Sciences. 112, 28, p. 8702-8707 6 p.

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  77. Drosophila melanogaster: The model organism of choice for the complex biology of multicellular organisms

    Beckingham, K. M., Armstrong, D., Texada, M. J., Munjaal, R. & Baker, D. A., 2005, In : Gravitational and Space Biology. 18, 2

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  78. Dying mRNA Tells a Story of Its Life

    Wallace, EW. J. & Drummond, D. A., 4 Jun 2015, In : Cell. 161, 6, p. 1246 - 1248 3 p.

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  79. Dynamic Conditional Random Fields: Factorized Probabilistic Models for Labeling and Segmenting Sequence Data

    Sutton, C., McCallum, A. & Rohanimanesh, K., 1 May 2007, In : Journal of Machine Learning Research. 8, p. 693-723 31 p.

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  80. Dynamic competition between contour integration and contour segmentation probed with moving stimuli

    Lorenceau, J., Giersch, A. & Seriés, P., 1 Jan 2005, In : Vision Research. 45, 1, p. 103-116

    Research output: Contribution to journalArticle

  81. Dynamic metabolic control: towards precision engineering of metabolism

    Liu, D., Mannan, A. A., Han, Y., Oyarzun, D. & Zhang, F., 1 Jul 2018, In : Journal of Industrial Microbiology & Biotechnology. 45, 7, p. 535-543 9 p.

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  82. Dynamic optimization of metabolic networks coupled with gene expression

    Waldherr, S., Oyarzún, D. A. & Bockmayr, A., 21 Jan 2015, In : Journal of Theoretical Biology. 365, p. 469-485 17 p.

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  83. Dynamic trees for image modelling

    Adams, N. J. & Williams, C. K. I., Sep 2003, In : Image and vision computing. 21, 10, p. 865-877 13 p.

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  84. Dynamical Constraints on Using Precise Spike Timing to Compute in Recurrent Cortical Networks

    Banerjee, A., Seriés, P. & Pouget, A., 1 Apr 2008, In : Neural Computation. 20, 4, p. 974-993

    Research output: Contribution to journalArticle

  85. Dynamical Inference from a Kinematic Snapshot: The Force Law in the Solar System

    Bovy, J., Murray, I. & Hogg, D. W., Mar 2010, In : Astrophysical Journal. 711, 2, p. 1157-1167 11 p.

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  86. Dynamics and Robustness of Familiarity Memory

    Cortes, J. M., Greve, A., Barrett, A. B. & van Rossum, M. C. W., 20 Oct 2009, In : Neural Computation. 22, 2, p. 448-466 19 p.

    Research output: Contribution to journalArticle

  87. Dynamics of Elongation Factor 2 Kinase Regulation in Cortical Neurons in Response to Synaptic Activity

    Kenney, J. W., Sorokina, O., Genheden, M., Sorokin, A., Armstrong, J. D. & Proud, C. G., 18 Feb 2015, In : Journal of Neuroscience. 35, 7, p. 3034-3047 14 p.

    Research output: Contribution to journalArticle

  88. Dynamics of a starvation-to-surfeit shift: a transcriptomic and modelling analysis of the bacterial response to zinc reveals transient behaviour of the Fur and SoxS regulators

    Graham, A. I., Sanguinetti, G., Bramall, N., McLeod, C. W. & Poole, R. K., 2012, In : Microbiology. 158, 1, p. 284-292 9 p.

    Research output: Contribution to journalArticle

  89. Dynamics of complex feedback architectures in metabolic pathways

    Chaves, M. & Oyarzun, D., 1 Jan 2019, In : Automatica. 99, p. 323-332 10 p.

    Research output: Contribution to journalArticle

  90. ELFI: Engine for Likelihood-Free Inference

    Lintusaari, J., Vuollekoski, H., Kangasrääsiö, A., Skyten, K., Järvenpää, M., Marttinen, P., Gutmann, M., Vehtari, A., Corander, J. & Kaski, S., 20 Jun 2018, (Accepted/In press) In : Journal of Machine Learning Research. 8 p.

    Research output: Contribution to journalArticle

  91. Early-Stage Waves in the Retinal Network Emerge Close to a Critical State Transition between Local and Global Functional Connectivity

    Hennig, M. H., Adams, C., Willshaw, D. & Sernagor, E., Jan 2009, In : The Journal of Neuroscience. 29, 4, p. 1077-1086 10 p.

    Research output: Contribution to journalArticle

  92. Edge co-occurrences are sufficient to categorize natural versus animal images

    Perrinet, L. U. & Bednar, J. A., 22 Aug 2014, In : Journal of Vision. 14, 10, p. 1310-1310

    Research output: Contribution to journalArticle

  93. Effects of Noise on the Spike Timing Precision of Retinal Ganglion Cells

    van Rossum, M. C. W., O'Brien, B. J. & Smith, R. G., 2003, In : Journal of Neurophysiology. 89, 5, p. 2406-2419 14 p.

    Research output: Contribution to journalArticle

  94. Effects of fixational eye movements on retinal ganglion cell responses: a modelling study

    Hennig, M. H. & Wörgötter, F., 2007, In : Frontiers in Computational Neuroscience. 1, 2, p. 69-84

    Research output: Contribution to journalArticle

  95. Efficient acquisition rules for model-based approximate Bayesian computation

    Järvenpää, M., Gutmann, M., Pleska, A., Vehtari, A. & Marttinen, P., 18 Sep 2018, In : Bayesian analysis. 28 p.

    Research output: Contribution to journalArticle

  96. Efficient low-order approximation of first-passage time distributions

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    Research output: Contribution to journalArticle

  97. Elemental and non-elemental olfactory learning in Drosophila

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    Research output: Contribution to journalArticle

  98. Elucidating Poor Decision-Making in a Rat Gambling Task

    Rivalan, M., Valton, V., Series, P., Marchand, A. R., Dellu-hagedorn, F. & Ravel, N. (ed.), 5 Dec 2013, In : PLoS ONE. 8, 12, p. e82052

    Research output: Contribution to journalArticle

  99. Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data

    Thorne, T., 10 Dec 2015, In : Statistical applications in genetics and molecular biology. 14, 6, p. 575-583 9 p.

    Research output: Contribution to journalArticle

  100. Empowering learners with personalised learning approaches? Agency, equity and transparency in the context of learning analytics

    Tsai, Y-S., Perrotta, C. & Gasevic, D., 25 Nov 2019, In : Assessment & Evaluation in Higher Education. p. 1-14 23 p.

    Research output: Contribution to journalArticle

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