Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. 2019
  2. Scaling Spike Detection and Sorting for Next-Generation Electrophysiology

    Hennig, M. H., Hurwitz, C. & Sorbaro, M., 10 May 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 171-184 14 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  3. Mode Normalization

    Deecke, L., Murray, I. & Bilen, H., 9 May 2019, Proceedings of the Seventh International Conference on Learning Representations. New Orleans, Louisiana, USA, 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. Centre Report 2019: Centre for Research in Digital Education

    Bayne, S., Ewins, A., Evans, P., Gallagher, M., Ghazali-Mohammed, Z., Manches, A., Odai, L., Knox, J., Menzies, J., O'shea, C., Plowman, L., Ross, J., Sowton, C., Robertson, J., Sheail, P., Tsai, Y-S., Wang, Y., Williamson, B., Farrell, K., Lawson, T. & 1 others, Priztker, R., 1 May 2019, The Centre for Research in Digital Education. 21 p.

    Research output: Book/ReportCommissioned report

  5. Adaptive Gaussian Copula ABC

    Chen, Y. & Gutmann, M., 25 Apr 2019, Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS 2019). Naha, Okinawa, Japan: PMLR, Vol. 89. p. 1584-1592 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  6. Efficient Bayesian Experimental Design for Implicit Models

    Kleinegesse, S. & Gutmann, M., 25 Apr 2019, Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS 2019). Naha, Okinawa, Japan: PMLR, Vol. 89. p. 476-485 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  7. Sequential Neural Likelihood: Fast Likelihood-free Inference with Autoregressive Flows

    Papamakarios, G., C, D. & Murray, I., 25 Apr 2019, Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS) 2019. Naha, Okinawa, Japan: PMLR, Vol. 89. p. 837-848 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  8. Variational Noise-Contrastive Estimation

    Rhodes, B. & Gutmann, M., 25 Apr 2019, Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS 2019). Naha, Okinawa, Japan: PMLR, Vol. 89. p. 2741-2750 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. Inverting Supervised Representations with Autoregressive Neural Density Models

    Nash, C., Kushman, N. & Williams, C. K. I., 18 Apr 2019, Proceedings of the Twenty-Second International Conference on Artificial Intelligence and Statistics. Lawrence, N. & Reid, M. (eds.). PMLR, Vol. 89. 10 p. (Proceedings of Machine Learning Research).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. Multi-Task Time Series Analysis applied to Drug Response Modelling

    Bird, A., Williams, C. K. I. & Hawthorne, C., 18 Apr 2019, Proceedings of the Twenty-Second International Conference on Artificial Intelligence and Statistics. Lawrence, N. & Reid, M. (eds.). PMLR, Vol. 89. 10 p. (Proceedings of Machine Learning Research).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. Dynamic Evaluation of Transformer Language Models

    Krause, B., Mbabazi, E., Murray, I. & Renals, S., 17 Apr 2019, 6 p.

    Research output: Working paper

  12. Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

    Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In : Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.

    Research output: Contribution to journalReview article

  13. Regeneration of dopaminergic neurons in adult zebrafish depends on immune system activation and differs for distinct populations

    Caldwell, L., Davies, N. O., Cavone, L., Mysiak, K., Semenova, S., Panula, P., Armstrong, J. D., Becker, C. G. & Becker, T., 4 Apr 2019, In : Journal of Neuroscience.

    Research output: Contribution to journalArticle

  14. Developmental Organisation of Central Neurons in the Adult Drosophila Ventral Nervous System

    Shepherd, D., Sahota, V., Court, R., Williams, D. & Truman, J., 28 Mar 2019, In : Journal of Comparative Neurology. 72 p.

    Research output: Contribution to journalArticle

  15. Melissa: Bayesian clustering and imputation of single cell methylomes

    Kapourani, C. A. & Sanguinetti, G., 21 Mar 2019, In : Genome Biology. 20, 1, 15 p., 61.

    Research output: Contribution to journalArticle

  16. Stochastic modelling reveals mechanisms of metabolic heterogeneity

    Tonn, M., Thomas, P., Barahona, M. & Oyarzun, D., 21 Mar 2019, In : Communications biology. 2, 9 p., 108.

    Research output: Contribution to journalArticle

  17. Bayesian Inference of Atomistic Structure in Functional Materials

    Todorovic, M., Gutmann, M., Corander, J. & Rinke, P., 18 Mar 2019, In : npj Computational Materials. 5, 7 p., 35.

    Research output: Contribution to journalArticle

  18. Endoscopic sensing of distal lung physiology

    Choudhury, D., Tanner, M. G., McAughtrie, S., Yu, F., Mills, B., Choudhary, T. R., Seth, S., Craven, T. H., Stone, J. M., Mati, I. K., Campbell, C. J., Bradley, M., Williams, C. K. I., Dhaliwal, K., Birks, T. A. & Thomson, R. R., 18 Mar 2019, In : Journal of Physics: Conference Series. 1151, 9 p., 012009.

    Research output: Contribution to journalArticle

  19. Evolutionary dynamics of residual disease in human glioblastoma

    Spiteri, I., Caravagna, G., Cresswell, G., Vatsiou, A., Nichol, D., Acar, A., Ermini, L., Chkhaidze, K., Werner, B., Mair, R., Brognaro, E., Verhaak, R., Sanguinetti, G., Sara, P., Watts, C. & Sottoriva, A., Mar 2019, In : Annals of oncology. 30, 3, p. 456–463 8 p., mdy506.

    Research output: Contribution to journalArticle

  20. Post-traumatic stress disorder as a disorder of prediction

    Seriès, P., Mar 2019, In : Nature Neuroscience. 22, 3, p. 334-336 3 p.

    Research output: Contribution to journalArticle

  21. Analysis of a genetic-metabolic oscillator with piecewise linear models

    Chaves, M., Oyarzun, D. & Gouze, J-L., 7 Feb 2019, In : Journal of Theoretical Biology. 462, p. 259-269 11 p.

    Research output: Contribution to journalArticle

  22. Are We There Yet? How and When Specific Biotechnologies Will Improve Human Health

    O'Day, E., Hosta‐Rigau, L., Oyarzun, D., Okano, H., de Lorenzo, V., von Kameke, C., Alsafar, H., Cao, C., Chen, G-Q., Ji, W., Roberts, R. J., Ronaghi, M., Yeung, K., Zhang, F. & Lee, S. Y., 10 Jan 2019, In : Biotechnology Journal. 14, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  23. Modelling socio-economic and energy data to generate business-as-usual scenarios for carbon emissions

    Roberts, S. H., Axon, C. J., Goddard, N. H., Foran, B. D. & Warr, B. S., 10 Jan 2019, In : Journal of Cleaner Production. 207, p. 980 - 997 18 p.

    Research output: Contribution to journalArticle

  24. Learning analytics adoption – approaches and maturity

    Tsai, Y-S., Kovanović, V. & Gasevic, D., 3 Jan 2019, (Accepted/In press). 2 p.

    Research output: Contribution to conferencePoster

  25. Probabilistic Programming with Densities in SlicStan: Efficient, Flexible, and Deterministic

    Gorinova, M. I., Gordon, A. D. & Sutton, C., 2 Jan 2019, In : Proceedings of the ACM on Programming Languages (PACMPL). 3, POPL, p. 35:1-35:30 30 p., 35.

    Research output: Contribution to journalArticle

  26. Dynamics of complex feedback architectures in metabolic pathways

    Chaves, M. & Oyarzun, D., 1 Jan 2019, In : Automatica. 99, p. 323-332 10 p.

    Research output: Contribution to journalArticle

  27. Exploration by random network distillation

    Burda, Y., Edwards, H., Storkey, A. & Klimov, O., 2019. 17 p.

    Research output: Contribution to conferencePaper

  28. Gene Regulatory Network Inference: An Introductory Survey

    Huynh-Thu, V. A. & Sanguinetti, G., 2019, Gene Regulatory Networks: Methods and Protocols. Sanguinetti, G. & Huynh-Thu, V. A. (eds.). New York, NY: Springer New York LLC, p. 1-23 23 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  29. Gene Regulatory Networks: Methods and Protocols

    Sanguinetti, G. (ed.) & Huynh-Thu, V. A. (ed.), 2019, Humana Press. 285 p. (Methods in Molecular Biology Series Volume; vol. 1883)

    Research output: Book/ReportBook

  30. How to train your MAML

    Antoniou, A., Edwards, H. & Storkey, A., 2019. 11 p.

    Research output: Contribution to conferencePaper

  31. Large-Scale Study of Curiosity-Driven Learning

    Burda, Y., Edwards, H., Pathak, D., Storkey, A., Darrell, T. & Efros, A. A., 2019. 15 p.

    Research output: Contribution to conferencePaper

  32. On the Relation Between the Sharpest Directions of DNN Loss and the SGD Step Length

    Jastrzębski, S., Kenton, Z., Ballas, N., Fischer, A., Bengio, Y. & Storkey, A., 2019. 19 p.

    Research output: Contribution to conferencePaper

  33. RKappa: Software for Analyzing Rule-Based Models

    Sorokin, A., Sorokina, O. & Douglas Armstrong, J., 2019, Modeling Biomolecular Site Dynamics: Methods and Protocols. Hlavacek, W. S. (ed.). New York, NY: Springer New York LLC, p. 363-390 28 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  34. Tree-Based Learning of Regulatory Network Topologies and Dynamics with Jump3

    Huynh-Thu, V. A. & Sanguinetti, G., 2019, Gene Regulatory Networks: Methods and Protocols. Sanguinetti, G. & Huynh-Thu, V. A. (eds.). New York, NY: Springer New York LLC, p. 217-233 17 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  35. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data

    Huang, Y. & Sanguinetti, G., 2019, Computational Methods for Single-Cell Data Analysis. Yuan, G-C. (ed.). New York, NY: Springer New York LLC, p. 175-185 11 p. (Methods in Molecular Biology; vol. 1935).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  36. 2018
  37. Context Embedding Networks

    Kim, K. H., Mac Aodha, O. & Perona, P., 17 Dec 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition. Institute of Electrical and Electronics Engineers (IEEE), p. 8679-8687 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Teaching Categories to Human Learners with Visual Explanations

    Mac Aodha, O., Su, S., Chen, Y., Perona, P. & Yue, Y., 17 Dec 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition. Institute of Electrical and Electronics Engineers (IEEE), p. 3820-3828 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  39. The iNaturalist Species Classification and Detection Dataset

    Van Horn, G., Mac Aodha, O., Song, Y., Cui, Y., Sun, C., Shepard, A., Adam, H., Perona, P. & Belongie, S., 17 Dec 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition. Institute of Electrical and Electronics Engineers (IEEE), p. 8769-8778 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  40. Characterising Across-Stack Optimisations for Deep Convolutional Neural Networks

    Turner, J., Cano Reyes, J., Radu, V., Crowley, E., O'Boyle, M. & Storkey, A., 13 Dec 2018, Proceedings of the - Workload Characterization (IISWC), 2018 IEEE International Symposium on. Raleigh, North Carolina, USA: Institute of Electrical and Electronics Engineers (IEEE), p. 101-110 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  41. The SHEILA framework: informing institutional strategies and policy processes of learning analytics

    Tsai, Y-S., Moreno-Marcos, P. M., Jivet, I., Scheffel, M., Tammets, K., Kollom, K. & Gasevic, D., 11 Dec 2018, In : Journal of Learning Analytics. 5, 3, p. 5-20 16 p.

    Research output: Contribution to journalArticle

  42. Understanding the Role of Adaptivity in Machine Teaching: The Case of Version Space Learners

    Chen, Y., Singla, A., Mac Aodha, O., Perona, P. & Yue, Y., 8 Dec 2018, Advances in Neural Information Processing Systems 31. Bengio, S., Wallach, H., Larochelle, H., Grauman, K., Cesa-Bianchi, N. & Garnett, R. (eds.). Neural Information Processing Systems, Vol. 31. p. 1476-1486 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  43. Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina

    Jouty, J., Hilgen, G., Sernagor, E. & Hennig, M. H., 7 Dec 2018, In : Frontiers in Cellular Neuroscience. 12, 14 p., 481.

    Research output: Contribution to journalArticle

  44. SHEILA: Supporting Higher Education to Intergrate Learning Analytics Research Report

    Tsai, Y-S., Gasevic, D., Whitelock-Wainwright, A., Muñoz-Merino, P. J., Moreno-Marcos, P. M., Rubio Fernández, A., Delgado Kloos, C., Scheffel, M., Jivet, I., Drachsler, H., Tammets, K., Calleja, A. R., Kollom, K., Haywood, J., Cantero, N., Gourdin, A., Kelo, M. & Benke-Åberg, R., 30 Nov 2018, Edinburgh, UK: The University of Edinburgh. 44 p.

    Research output: Book/ReportOther report

  45. Mirror Neurons, Prediction and Hemispheric Coordination; The Prioritizing of Intersubjectivity over 'Intrasubjectivity'

    Shillcock, R., Thomas, J. & Bailes, R., 24 Nov 2018, In : Axiomathes. p. 1-15 15 p.

    Research output: Contribution to journalArticle

  46. Bayesian Adversarial Spheres: Bayesian Inference and Adversarial Examples in a Noiseless Setting

    Bekasovs, A. & Murray, I., 16 Nov 2018, (Accepted/In press) p. 1-6. 6 p.

    Research output: Contribution to conferencePaper

  47. Gaussian process modeling in approximate Bayesian computation to estimate horizontal gene transfer in bacteria

    Järvenpää, M., Gutmann, M., Vehtari, A. & Marttinen, P., 13 Nov 2018, In : Annals of Applied Statistics. 12, 4, p. 2228-2251 24 p.

    Research output: Contribution to journalArticle

  48. Co-Designing a Device for Behaviour-Based Energy Reduction in a Large Organisation

    Morgan, E., Webb, L., Carter, C. & Goddard, N., Nov 2018, In : Proceedings of the ACM on Human-Computer Interaction. 2, CSCW, p. 125:1-125:23 23 p., 125.

    Research output: Contribution to journalArticle

  49. Geppetto: a reusable modular open platform for exploring neuroscience data and models

    Cantarelli, M., Marin, B., Quintana, A., Earnshaw, M., Court, R., Gleeson, P., Dura-bernal, S., Silver, R. A. & Idili, G., 19 Oct 2018, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1758, p. 1-13 13 p.

    Research output: Contribution to journalArticle

  50. Information Estimation Using Non-Parametric Copulas

    Safaai, H., Onken, A., Harvey, C. & Panzeri, S., 10 Oct 2018, (Accepted/In press) In : Physical Review E. 17 p.

    Research output: Contribution to journalArticle

  51. Is there a burden attached to synaesthesia? Health screening of synaesthetes in the general population

    Carmichael, D., Smees, R., Shillcock, R. C. & Simner, J., 3 Oct 2018, In : British Journal of Psychology. p. 1-19 19 p.

    Research output: Contribution to journalArticle

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