Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. 2016
  2. Higher order methylation features for clustering and prediction in epigenomic studies

    Kapourani, A. & Sanguinetti, G., 1 Sep 2016, In : Bioinformatics. 33, 8, p. i405-i412 12 p.

    Research output: Contribution to journalArticle

  3. Neural Autoregressive Distribution Estimation

    Uria, B., Côté, M-A., Gregor, K., Murray, I. & Larochelle, H., 1 Sep 2016, In : Journal of Machine Learning Research. 17, 205, p. 1-37 37 p.

    Research output: Contribution to journalArticle

  4. A unified account of tilt illusions, association fields, and contour detection based on elastica

    Keemink, S. & van Rossum, M. C. W., Sep 2016, In : Vision Research. 126, p. 164–173 10 p.

    Research output: Contribution to journalArticle

  5. Bioluminescence-based approach to monitor neural activity in freely moving Drosophilalarvae

    Marescotti, M., Lagogiannis, K., Davies, W., Webb, B. & Armstrong, J. D., Sep 2016. 1 p.

    Research output: Contribution to conferencePoster

  6. Behavioral-state modulation of inhibition is context-dependent and cell type specific in mouse visual cortex

    Pakan, J. M., Lowe, S. C., Dylda, E., Keemink, S., Currie, S. P., Coutts, C. A. & Rochefort, N. L., 23 Aug 2016, In : eLIFE. 5

    Research output: Contribution to journalArticle

  7. Input-Output Non-Linear Dynamical Systems applied to Physiological Condition Monitoring

    Georgatzis, K., Williams, C. K. I. & Hawthorne, C., 20 Aug 2016, Proceedings of Machine Learning for Healthcare 2016: JMLR W&C Track Volume 56. Journal of Machine Learning Research: Workshop and Conference Proceedings, Vol. 56. 16 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  8. A Subsequence Interleaving Model for Sequential Pattern Mining

    Fowkes, J. & Sutton, C., 13 Aug 2016, KDD '16 Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. San Francisco , United States: ACM, p. 835-844 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. Policy learning for time-bounded reachability in Continuous-Time Markov Decision Processes via doubly-stochastic gradient ascent

    Bartocci, E., Bortolussi, L., Brázdil, T., Milios, D. & Sanguinetti, G., 3 Aug 2016, Quantitative Evaluation of Systems: 13th International Conference, QEST 2016, Quebec City, QC, Canada, August 23-25, 2016, Proceedings. Springer International Publishing, p. 244-259 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9826).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. Property-driven State-Space Coarsening for Continuous Time Markov Chains

    Michaelides, M., Milios, D., Hillston, J. & Sanguinetti, G., 3 Aug 2016, Quantitative Evaluation of Systems: 13th International Conference on Quantitative Evaluation of SysTems (QEST 2016). Quebec City, Canada: Springer International Publishing, p. 3-18 16 p. (Lecture Notes in Computer Science (LNCS); vol. 9826).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. A Bayesian Approach to Parameter Inference in Queueing Networks

    Wang, W., Casale, G. & Sutton, C., Aug 2016, In : ACM Transactions on Modeling and Computer Simulation. 27, 1, 26 p., 2.

    Research output: Contribution to journalArticle

  12. Clustering with a Reject Option: Interactive Clustering as Bayesian Prior Elicitation

    Srivastava, A., Zou, J. & Sutton, C., 27 Jul 2016, Proceedings of the 2016 ICML Workshop on Human Interpretability in Machine Learning (WHI 2016). p. 16-20 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  13. More Semantics More Robust: Improving Android Malware Classifiers

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 18 Jul 2016, 9th ACM Conference on Security and Privacy in Wireless and Mobile Networks. Darmstadt, Germany: ACM, p. 147-158 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  14. Multidisciplinary research: should effort be the measure of success?

    Buswell, R. A., Webb, L., Mitchell, V. & Mackley, K. L., 13 Jul 2016, In : Building Research and Information. 45, 5, p. 539-555 17 p.

    Research output: Contribution to journalArticle

  15. Algorithmic methods to infer the evolutionary trajectories in cancer progression

    Caravagna, G., Graudenzi, A., Ramazzotti, D., Sanz-Pamplona, R., De Sano, L., Mauri, G., Moreno, V., Antoniotti, M. & Mishra, B., 12 Jul 2016, In : Proceedings of the National Academy of Sciences. 113, 28, p. E4025-E4034 10 p.

    Research output: Contribution to journalArticle

  16. Acoustic trauma slows AMPAR-mediated EPSCs in the auditory brainstem, reducing GluA4 subunit expression as a mechanism to rescue binaural function

    Pilati, N., Linley, D. M., Selvaskandan, H., Uchitel, O., Hennig, M. H., Kopp-Scheinpflug, C. & Forsythe, I. D., 1 Jul 2016, In : Journal of Physiology. 594, 13, p. 3683-3703 41 p.

    Research output: Contribution to journalArticle

  17. A robust data-driven macro-socioeconomic-energy model

    Roberts, S. H., Axon, C. J., Goddard, N. H., Foran, B. D. & Warr, B. S., Jul 2016, In : Sustainable Production and Consumption. 7, p. 16-36 21 p.

    Research output: Contribution to journalArticle

  18. Utilising disaggregated energy data in feedback designs – the IDEAL project

    Goddard, N., Pullinger, M., Webb, L., Farrow, E., Farrow, E., Kilgour, J., Morgan, E. & Moore, J., Jul 2016, TEDDINET Energy Feedback Symposium 2016. p. 74-77 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  19. A Convolutional Attention Network for Extreme Summarization of Source Code

    Allamanis, M., Peng, H. & Sutton, C., 24 Jun 2016, Proceedings of The 33rd International Conference on Machine Learning, PMLR. New York, United States: PMLR, Vol. 48. p. 2091-2100 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  20. Systems biological approach to Parkinson's disease: Uncovering effects of PD on the synapse

    Heil, K. F., Sorokina, O., Armstrong, J. D. & Hellgren-kotaleski, J., 19 Jun 2016.

    Research output: Contribution to conferenceAbstract

  21. TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

    De Sano, L., Caravagna, G., Ramazzotti, D., Graudenzi, A., Mauri, G., Mishra, B. & Antoniotti, M., 15 Jun 2016, In : Bioinformatics. 32, 12, p. 1911-1913 3 p.

    Research output: Contribution to journalArticle

  22. Carbon monoxide gas is not inert, but global, in its consequences for bacterial gene expression, iron acquisition and antibiotic resistance

    Wareham, L. K., Begg, R., Jesse, H. E., Van Beilen, J., Ali, S., Svistunenko, D., McLean, S., Hellingwerf, K., Sanguinetti, G. & Poole, R. K., 13 Jun 2016, In : Antioxidants and Redox Signaling. 24, 17, p. 1013-1028 16 p.

    Research output: Contribution to journalArticle

  23. Analysis of individual mouse activity in group housed animals of different inbred strains using a novel automated home cage analysis system.

    Bains, R. S., Cater, H. L., Sillito, R. R., Chartsias, A., Sneddon, D., Concas, D., Keskivali-Bond, P., Lukins, T. C., Wells, S., Acevedo Arozena, A., Nolan, P. M. & Armstrong, J. D., 10 Jun 2016, In : Frontiers in behavioral neuroscience. 10, 106, 22 p.

    Research output: Contribution to journalArticle

  24. On Robust Malware Classifiers by Verifying Unwanted Behaviours

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., Jun 2016, Integrated Formal Methods: 12th International Conference, IFM 2016, Reykjavik, Iceland, June 1-5, 2016, Proceedings. Springer International Publishing, p. 326-341 15 p. (Lecture Notes in Computer Science; vol. 9681).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  25. My Text in Your Handwriting

    Haines, T. S. F., Mac Aodha, O. & Brostow, G. J., 31 May 2016, In : ACM Transactions on Graphics. 35, 3, p. 26:1-26:18 18 p., 26.

    Research output: Contribution to journalArticle

  26. Analysis of compound heterozygotes reveals that the mouse floxed Pax6 tm1Ued allele produces abnormal eye phenotypes

    Dorà, N. J., Crookshanks, A. J. F., Leung, K. K. Y., Simpson, T., Mason, J., Price, D. & West, J., 30 May 2016, In : Transgenic Research. p. 1-14 14 p.

    Research output: Contribution to journalArticle

  27. Cox process representation and inference for stochastic reaction-diffusion processes

    Schnoerr, D., Grima, R. & Sanguinetti, G., 25 May 2016, In : Nature Communications. 7, p. 1-11 11 p., 11729.

    Research output: Contribution to journalArticle

  28. Tracking of Individual Mice in a Social Setting Using Video Tracking Combined with RFID tags

    Armstrong, J. D., Acevedo-Arozena, A., Bains, R. S., Cater, H., Chartsias, A., Nolan, P., Sneddon, D., Sillito, R. & Wells, S., 25 May 2016, Proceedings of Measuring Behavior 2016: 10th International Conference on Methods and Techniques in Behavioral Research. Spink, A. J., Riedel, G., Zhou, L., Teekens, L., Albatal, R. & Gurrin, C. (eds.). Dublin, Ireland, p. 413-416 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Spike-Based Bayesian-Hebbian Learning of Temporal Sequences

    Tully, P. J., Lindén, H., Hennig, M. H. & Lansner, A., 23 May 2016, In : PLoS Computational Biology. 12, 5, 35 p., e1004954.

    Research output: Contribution to journalArticle

  30. Functional characterisation of human synaptic genes expressed in the Drosophila brain

    Zografos, L., Tang, J., Hesse, F., Wanker, E. E., Li, K. W., Smit, A. B., Davies, R. W. & Armstrong, J. D., 15 May 2016, In : Biology Open. 5, 5, p. 662-667 6 p.

    Research output: Contribution to journalArticle

  31. Network of Epistatic Interactions Within a Yeast snoRNA

    Puchta, O., Cseke, B., Czaja, H., Tollervey, D., Sanguinetti, G. & Kudla, G., 13 May 2016, In : Science.

    Research output: Contribution to journalArticle

  32. The impact of host metapopulation structure on the population genetics of colonizing bacteria

    Numminen, E., Gutmann, M., Shubin, M., Marttinen, P., Méric, G., Schaik, W. V., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J., 7 May 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

    Research output: Contribution to journalArticle

  33. The Role of Air Motion for Providing Thermal Comfort in Residential / Mixed Mode Buildings: a Multi-partner Global Innovation Initiative (GII) Project

    Loveday, D. L., Webb, L., Verma, P., Cook, M. J., Rawal, R., Vadodaria, K., Cropper, P., Brager, G., Zhang, H., Foldvary, V., Arens, E., Babich, F., Cobb, R., Ariffin, R., Kaam, S. & Toledo, L., 4 May 2016, Proceedings of 9th Windsor Conference: Making Comfort Relevant. Network for Comfort and Energy Use in Buildings, p. 947-962 16 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  34. Modelling-based experiment retrieval: A case study with gene expression clustering

    Blomstedt, P., Dutta, R., Seth, S., Brazma, A. & Kaski, S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1388-1394 7 p.

    Research output: Contribution to journalArticle

  35. Pseudo-Marginal Slice Sampling

    Murray, I. & Graham, M., May 2016, Proceedings of the 19th International Conference on Artificial Intelligence and Statistics 2016. Cadiz, Spain: PMLR, Vol. 51. p. 911-919 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  36. TASSAL: Autofolding for Source Code Summarization

    Fowkes, J., Chanthirasegaran, P., Ranca, R., Allamanis, M., Lapata, M. & Sutton, C., May 2016, ICSE '16 Proceedings of the 38th International Conference on Software Engineering Companion. ACM, p. 649-652 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  37. A Text-Mining Approach to Explain Unwanted Behaviours

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 18 Apr 2016, EuroSec '16 Proceedings of the 9th European Workshop on System Security . ACM, 6 p. 4

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Explaining Unwanted Behaviours in Context

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 6 Apr 2016, Proceedings of the 1st International Workshop on Innovations in Mobile Privacy and Security co-located with the International Symposium on Engineering Secure Software and Systems (ESSoS 2016). CEUR-WS.org, p. 38-45 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  39. qpMerge: Merging different peptide isoforms using a motif centric strategy

    Hindle, M. M., Le Bihan, T., Krahmer, J., Martin, S. F., Noordally, Z. B., Simpson, T. I. & Millar, A. J., 5 Apr 2016, (Submitted) bioRxiv, at Cold Spring Harbor Laboratory, 9 p.

    Research output: Working paper

  40. Smoothed model checking for uncertain Continuous-Time Markov Chains

    Bortolussi, L., Milios, D. & Sanguinetti, G., Apr 2016, In : Information and Computation. 247, p. 235-253 24 p.

    Research output: Contribution to journalArticle

  41. Space-by-time decomposition for single-trial decoding of M/EEG activity

    Delis, I., Onken, A., Schyns, P. G., Panzeri, S. & Philiastides, M. G., 24 Mar 2016, In : NeuroImage. 133, Supplement C, p. 504-515 12 p.

    Research output: Contribution to journalArticle

  42. CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress

    Holyoake, L. V., Hunt, S., Sanguinetti, G., Cook, G. M., Howard, M. J., Rowe, M. L., Poole, R. K. & Shepherd, M., 15 Mar 2016, In : Biochemical Journal. 473, 6, p. 693-701 9 p.

    Research output: Contribution to journalArticle

  43. On the Identifiability of Transmission Dynamic Models for Infectious Diseases

    Lintusaari, J., Gutmann, M. U., Kaski, S. & Corander, J., 1 Mar 2016, In : Genetics. 202, 3, p. 911-918 8 p.

    Research output: Contribution to journalArticle

  44. Fluid consumption and taste novelty determines transcription temporal dynamics in the gustatory cortex

    Inberg, S., Jacob, E., Elkobi, A., Edry, E., Rappaport, A., Simpson, T. I., Armstrong, J. D., Shomron, N., Pasmanik-Chor, M. & Rosenblum, K., 9 Feb 2016, In : Molecular Brain. 9, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  45. Blending LSTMs into CNNs

    Geras, K. J., Mohamed, A., Caruana, R., Urban, G., Wang, S., Aslan, Ö., Philipose, M., Richardson, M. & Sutton, C., 4 Feb 2016, (Accepted/In press) International Conference on Learning Representations (ICLR Workshop). 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

    Paroni, A., Graudenzi, A., Caravagna, G., Damiani, C., Mauri, G. & Antoniotti, M., 4 Feb 2016, In : BMC Bioinformatics. 17, 64, 12 p.

    Research output: Contribution to journalArticle

  47. Censoring Representations with an Adversary

    Edwards, H. & Storkey, A., 4 Feb 2016, (Accepted/In press) International Conference in Learning Representations (ICLR2016). 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  48. Expression of mRNA Encoding Mcu and Other Mitochondrial Calcium Regulatory Genes Depends on Cell Type, Neuronal Subtype, and Ca2+ Signaling

    Work enabled by Edinburgh Genomics, 2 Feb 2016, In : PLoS ONE. 11, 2, 16 p., 0148164.

    Research output: Contribution to journalArticle

  49. Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting

    Pernet, C., Krzysztof, G., Job, D., Rodriguez Gonzalez, D., Storkey, A., Whittle, I. & Wardlaw, J., Feb 2016, In : International journal of medical informatics. 86, p. 37-42 6 p.

    Research output: Contribution to journalArticle

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