Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. 2016
  2. Stochastic Parallel Block Coordinate Descent for Large-scale Saddle Point Problems

    Zhu, Z. & Storkey, A. J., Feb 2016, Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence. AAAI Press, p. 2429-2534 106 p. (AAAI'16).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  3. Improved Functional Enrichment Analysis of Biological Networks using Scalable Modularity Based Clustering

    Mclean, C., He, X., Simpson, I. T. & Armstrong, D. J., 31 Jan 2016, In : Journal of Proteomics & Bioinformatics. 9, 1, p. 9-18 10 p.

    Research output: Contribution to journalArticle

  4. Ordering cancer mutational profiles of cross-sectional copy number alterations

    Graudenzi, A., Caravagna, G., Bocicor, I., Cava, C., Antoniotti, M. & Mauri, G., Jan 2016, In : International Journal of Data Mining and Bioinformatics. 15, 1, p. 59-83 25 p.

    Research output: Contribution to journalArticle

  5. Probabilistic archetypal analysis

    Seth, S. & Eugster, M. JA., Jan 2016, In : Machine Learning. 102, 1, p. 85-113 29 p.

    Research output: Contribution to journalArticle

  6. Shaping pulses to control bistable systems: Analysis, computation and counterexamples

    Sootla, A., Oyarzún, D., Angeli, D. & Stan, G-B., Jan 2016, In : Automatica. 63, p. 254-264 11 p.

    Research output: Contribution to journalArticle

  7. Bayesian Optimization for Likelihood-Free Inference of Simulator-Based Statistical Models

    Gutmann, M. U. & Corander, J., 2016, In : Journal of Machine Learning Research. 17, 125, p. 1-47 47 p.

    Research output: Contribution to journalArticle

  8. Context Matters: Towards Extracting a Citation’s Context Using Linguistic Features

    Duma, D., Sutton, C. & Klein, E., 2016, JCDL '16 Proceedings of the 16th ACM/IEEE-CS on Joint Conference on Digital Libraries. ACM, p. 201-202 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. Gene switching rate determines response to extrinsic perturbations in the self-activation transcriptional network motif

    De Franciscis, S., Caravagna, G., Mauri, G. & D’onofrio, A., 2016, In : Scientific Reports. 6, 15 p., 26980.

    Research output: Contribution to journalArticle

  10. Learning and Verifying Unwanted Behaviours

    Chen, W., Aspinall, D., Gordon, A., Sutton, C. & Muttik, I., 2016, 4th Workshop on Hot Issues in Security Principles and Trust (HotSpot 2016). p. 17-32 15 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. Listening Natively Across Perceptual Domains?

    Langus, A., Seyed-allaei, S., Uysal, E., Pirmoradian, S., Marino, C., Asaadi, S., Eren, Ö., Toro, J. M., Peña, M., Bion, R. A. H. & Nespor, M., 2016, In : Journal of Experimental Psychology: Learning, Memory, and Cognition.

    Research output: Contribution to journalArticle

  12. Resource-Efficient Feature Gathering at Test Time

    Gray, G. & Storkey, A., 2016.

    Research output: Contribution to conferencePoster

  13. 2015
  14. Confidence-based integrated reweighting model of task-difficulty explains location-based specificity in perceptual learning

    Talluri, B. C., Hung, S., Seitz, A. R. & Seriès, P., 29 Dec 2015, In : Journal of Vision. 15, 10, 12 p., 17.

    Research output: Contribution to journalArticle

  15. Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays

    Muthmann, J-O., Amin, H., Sernagor, E., Maccione, A., Panas, D., Berdondini, L., Bhalla, U. S. & Hennig, M., 18 Dec 2015, In : Frontiers in Neuroinformatics. 9, 21 p., 28.

    Research output: Contribution to journalArticle

  16. RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes

    Lauria, F., Tebaldi, T., Lunelli, L., Struffi, P., Gatto, P., Pugliese, A., Brigotti, M., Montanaro, L., Ciribilli, Y., Inga, A., Quattrone, A., Sanguinetti, G. & Viero, G., 15 Dec 2015, In : Nucleic Acids Research. 43, 22, 15 p., e153.

    Research output: Contribution to journalArticle

  17. Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data

    Thorne, T., 10 Dec 2015, In : Statistical applications in genetics and molecular biology. 14, 6, p. 575-583 9 p.

    Research output: Contribution to journalArticle

  18. Design of a bistable switch to control cellular uptake

    Oyarzun, D. & Madalena, C., 6 Dec 2015, In : Journal of the Royal Society Interface. 12, 113, 15 p., 20150618.

    Research output: Contribution to journalArticle

  19. Homeostatic intrinsic plasticity, neural heterogeneity and memory maintenance

    Sweeney, Y., Hellgren-Kotaleski, J. & Hennig, M., Dec 2015, In : BMC Neuroscience. 16, 1, p. 1-2 2 p.

    Research output: Contribution to journalArticle

  20. On the Efficiency of Recurrent Neural Network Optimization Algorithms

    Krause, B., Lu, L., Murray, I. & Renals, S., Dec 2015, OPT2015 Optimization for Machine Learning at the Neural Information Processing Systems Conference, 2015. 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  21. Estimating the location and size of retinal injections from orthogonal images of an intact retina

    Hjorth, J. J. J., Savier, E., Sterratt, D. C., Reber, M. & Eglen, S. J., 21 Nov 2015, In : BMC Neuroscience. 16, 1, p. 1-10 10 p.

    Research output: Contribution to journalArticle

  22. Comparison of different moment-closure approximations for stochastic chemical kinetics

    Schnoerr, D., Sanguinetti, G. & Grima, R., 14 Nov 2015, In : The Journal of Chemical Physics. 143, 18, 17 p., 185101.

    Research output: Contribution to journalArticle

  23. Recombination produces coherent bacterial species clusters in both core and accessory genomes

    Marttinen, P., Croucher, N. J., Gutmann, M. U., Corander, J. & Hanage, W. P., 6 Nov 2015, In : Microbial Genomics. 1, 5, 6 p.

    Research output: Contribution to journalArticle

  24. Probabilistic Inference and Bayesian Priors in Visual Perception

    Sotiropoulos, G. & Series, P., 2 Nov 2015, Biologically Inspired Computer Vision: Fundamentals and Applications. Wiley-VCH Verlag GmbH & Co. KGaA, p. 201-220 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  25. MEK Inhibitors Reverse cAMP-Mediated Anxiety in Zebrafish

    Lundegaard, P. R., Anastasaki, C., Grant, N. J., Sillito, R. R., Zich, J., Zeng, Z., Paranthaman, K., Larsen, A. P., Armstrong, J. D., Porteous, D. J. & Patton, E. E., 22 Oct 2015, In : Chemistry and Biology.

    Research output: Contribution to journalArticle

  26. Verifying Anti-Security Policies Learnt from Android Malware Families

    Chen, W., Sutton, C., Aspinall, D., Gordon, A., Shen, Q. & Muttik, I., 21 Oct 2015, Fourth International Seminar on Program Verification, Automated Debugging and Symbolic Computation. 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  27. Becoming the expert - interactive multi-class machine teaching

    Johns, E., Mac Aodha, O. & Brostow, G. J., 15 Oct 2015, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR). Institute of Electrical and Electronics Engineers (IEEE), p. 2616-2624 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  28. Using affective and behavioural sensors to explore aspects of collaborative music making

    Morgan, E., Gunes, H. & Bryan-Kinns, N., Oct 2015, In : International Journal of Human-Computer Studies. 82, p. 31-47 17 p.

    Research output: Contribution to journalArticle

  29. Analysis of Multiplexed Neural Codes Using the Laplacian Pyramid Decomposition

    Molano-Mazon, M., Onken, A., Safaai, H. & Panzeri, S., 15 Sep 2015. 1 p.

    Research output: Contribution to conferenceAbstract

  30. CAPRI: efficient inference of cancer progression models from cross-sectional data

    Ramazzotti, D., Caravagna, G., Olde Loohuis, L., Graudenzi, A., Korsunsky, I., Mauri, G., Antoniotti, M. & Mishra, B., 15 Sep 2015, In : Bioinformatics. 31, 18, p. 3016-26 11 p.

    Research output: Contribution to journalArticle

  31. Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress

    Wallace, E. W. J., Kear-Scott, J. L., Pilipenko, E. V., Schwartz, M. H., Laskowski, P. R., Rojek, A. E., Katanski, C. D., Riback, J. A., Dion, M. F., Franks, A. M., Airoldi, E. M., Pan, T., Budnik, B. A. & Drummond, D. A., 10 Sep 2015, In : Cell. 162, 6, p. 1286—1298 13 p.

    Research output: Contribution to journalArticle

  32. Analysis of transcript changes in a heme-deficient mutant of Escherichia coli in response to CORM-3 [Ru(CO)3Cl(glycinate)]

    Wilson, J. L., Mclean, S., Begg, R., Sanguinetti, G. & Poole, R. K., 1 Sep 2015, In : Genomics Data. 5, p. 231-234 4 p.

    Research output: Contribution to journalArticle

  33. CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

    Rubinacci, S., Graudenzi, A., Caravagna, G., Mauri, G., Osborne, J., Pitt-Francis, J. & Antoniotti, M., 1 Sep 2015, In : Cancer Informatics. p. 53-65 13 p.

    Research output: Contribution to journalArticle

  34. Dissecting Magnetar Variability with Bayesian Hierarchical Models

    Huppenkothen, D., Brewer, B. J., Hogg, D. W., Murray, I., Frean, M., Elenbaas, C., Watts, A. L., Levin, Y., Van Der Horst, A. J. & Kouveliotou, C., 1 Sep 2015, In : Astrophysical Journal. 810, 1, 21 p.

    Research output: Contribution to journalArticle

  35. Unified pre- and postsynaptic long-term plasticity enables reliable and flexible learning

    Costa, R. P., Froemke, R. C., Sjöström, P. J. & Van Rossum, M. C. W., 26 Aug 2015, In : eLIFE. 4, 24 p.

    Research output: Contribution to journalArticle

  36. Archetypal Analysis for Nominal Observations

    Seth, S. & Eugster, M., 19 Aug 2015, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 38, 5, p. 849-861 14 p.

    Research output: Contribution to journalArticle

  37. Compact Explanations of Why Malware is Bad

    Chen, W., Sutton, C., Gordon, A., Aspinall, D., Muttik, I. & Shen, Q., 10 Aug 2015, (Accepted/In press) AI4FM 2015. 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Distilling Intractable Generative Models

    Papamakarios, G. & Murray, I., 2 Aug 2015, (Accepted/In press) Probabilistic Integration Workshop at the Neural Information Processing Systems Conference, 2015. 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  39. A Bayesian approach for structure learning in oscillating regulatory networks

    Trejo-Banos, D., Millar, A. & Sanguinetti, G., 14 Jul 2015, In : Bioinformatics. 31, 22, p. 3617-3624 8 p.

    Research output: Contribution to journalArticle

  40. A rule-based model of Clathrin Mediated Endocytosis: Gaining a better understanding of Parkinson's Disease

    Heil, K., Sorokina, O., Hellgren-kotaleski, J. & Armstrong, J. D., 5 Jul 2015.

    Research output: Contribution to conferencePoster

  41. Shaping pulses to control bistable biological systems

    Sootla, A., Oyarzún, D., Angeli, D. & Stan, G., 1 Jul 2015, 2015 American Control Conference (ACC). p. 3138-3143 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  42. A Diffusive Homeostatic Signal Maintains Neural Heterogeneity and Responsiveness in Cortical Networks

    Sweeney, Y., Hellgren Kotaleski, J. & Hennig, M. H., Jul 2015, In : PLoS Computational Biology. 11, 7, e1004389.

    Research output: Contribution to journalArticle

  43. Adaptation of anaerobic cultures of Escherichia coli K-12 in response to environmental trimethylamine-N-oxide

    Denby, K. J., Rolfe, M. D., Crick, E., Sanguinetti, G., Poole, R. K. & Green, J., Jul 2015, In : Environmental Microbiology. 17, 7, p. 2477-2491 15 p.

    Research output: Contribution to journalArticle

  44. Expectations developed over multiple timescales facilitate visual search performance

    Gekas, N., Seitz, A. R. & Seriés, P., Jul 2015, In : Journal of Vision. 15, 9, 10.

    Research output: Contribution to journalArticle

  45. Piezo is essential for amiloride-sensitive stretch-activated mechanotransduction in larval Drosophila dorsal bipolar dendritic sensory neurons

    Suslak, T., Watson, S., Thompson, K. J., Shenton, F. C., Bewick, G. S., Armstrong, J. D. & Jarman, A. P., Jul 2015, In : PLoS ONE. 10, 7, 16 p., e0130969.

    Research output: Contribution to journalArticle

  46. CO-Releasing Molecules Have Nonheme Targets in Bacteria: Transcriptomic, mathematical Modeling and Biochemical Analyses of CORM-3 [Ru(CO) 3 Cl (glycinate)] Actions on a Heme-Deficient Mutant of Escherichia coli

    Wilson, J. L., Wareham, L. K., Mclean, S., Begg, R., Greaves, S., Mann, B. E., Sanguinetti, G. & Poole, R. K., 25 Jun 2015, In : Antioxidants and Redox Signaling. 23, 2, p. 148-162 15 p.

    Research output: Contribution to journalArticle

  47. Contribution of LFP dynamics to single-neuron spiking variability in motor cortex during movement execution

    Rule, M., Vargas-Irwin, C., Donoghue, J. P. & Truccolo, W., 22 Jun 2015, In : Frontiers in Systems Neuroscience. 9, 16 p., 89.

    Research output: Contribution to journalArticle

  48. Dying mRNA Tells a Story of Its Life

    Wallace, EW. J. & Drummond, D. A., 4 Jun 2015, In : Cell. 161, 6, p. 1246 - 1248 3 p.

    Research output: Contribution to journalArticle

  49. Sloppiness in spontaneously active neuronal networks

    Panas, D., Amin, H., Maccione, A., Muthmann, O., van Rossum, M., Berdondini, L. & Hennig, M. H., 3 Jun 2015, In : Journal of Neuroscience. 35, 22, p. 8480-92 13 p.

    Research output: Contribution to journalArticle

  50. Quantitative Assessment of Computational Models for Retinotopic Map Formation

    Hjorth, J. J. J., Sterratt, D. C., Cutts, C. S., Willshaw, D. J. & Eglen, S. J., 1 Jun 2015, In : Developmental neurobiology. 75, 6, p. 641-666 26 p.

    Research output: Contribution to journalArticle

Previous 1...3 4 5 6 7 8 9 10 ...27 Next