Edinburgh Research Explorer

Institute for Adaptive and Neural Computation

Organisational unit: Research Institute

  1. 2015
  2. Contribution of LFP dynamics to single-neuron spiking variability in motor cortex during movement execution

    Rule, M., Vargas-Irwin, C., Donoghue, J. P. & Truccolo, W., 22 Jun 2015, In : Frontiers in Systems Neuroscience. 9, 16 p., 89.

    Research output: Contribution to journalArticle

  3. Dying mRNA Tells a Story of Its Life

    Wallace, EW. J. & Drummond, D. A., 4 Jun 2015, In : Cell. 161, 6, p. 1246 - 1248 3 p.

    Research output: Contribution to journalArticle

  4. Sloppiness in spontaneously active neuronal networks

    Panas, D., Amin, H., Maccione, A., Muthmann, O., van Rossum, M., Berdondini, L. & Hennig, M. H., 3 Jun 2015, In : Journal of Neuroscience. 35, 22, p. 8480-92 13 p.

    Research output: Contribution to journalArticle

  5. Quantitative Assessment of Computational Models for Retinotopic Map Formation

    Hjorth, J. J. J., Sterratt, D. C., Cutts, C. S., Willshaw, D. J. & Eglen, S. J., 1 Jun 2015, In : Developmental neurobiology. 75, 6, p. 641-666 26 p.

    Research output: Contribution to journalArticle

  6. Energy Efficient Sparse Connectivity from Imbalanced Synaptic Plasticity Rules

    Sacramento, J., Wichert, A. & van Rossum, M. C. W., Jun 2015, In : PLoS Computational Biology. 11, 6, e1004265.

    Research output: Contribution to journalArticle

  7. Cellular mechanisms underlying behavioral state-dependent bidirectional modulation of motor cortex output

    Schiemann, J., Puggioni, P., Pelko, M., Domanski, A., Van Rossum, M. & Duguid, I., 26 May 2015, In : Cell Reports. 11, 8, p. 1319–1330

    Research output: Contribution to journalArticle

  8. Combining tree-based and dynamical systems for the inference of gene regulatory networks

    Huynh-Thu, V. A. & Sanguinetti, G., 15 May 2015, In : Bioinformatics. 31, 10, p. 1614-1622 9 p.

    Research output: Contribution to journalArticle

  9. Scheduled Denoising Autoencoders

    Geras, K. & Sutton, C., 10 May 2015, International Conference on Learning Representations (ICLR) 2015. 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. Reduced structural connectivity within a prefrontal-motor-subcortical network in amyotrophic lateral sclerosis

    Buchanan, C. R., Pettit, L. D., Storkey, A. J., Abrahams, S. & Bastin, M. E., May 2015, In : Journal of Magnetic Resonance Imaging. 41, 5, p. 1342-1352 11 p.

    Research output: Contribution to journalArticle

  11. Validating a standardised test battery for synesthesia: Does the Synesthesia Battery reliably detect synesthesia?

    Carmichael, D. A., Down, M. P., Shillcock, R. C., Eagleman, D. M. & Simner, J., May 2015, In : Consciousness and Cognition. 33, p. 375-385 11 p.

    Research output: Contribution to journalArticle

  12. An analytic characterization of a stabilizing feedback for LTI plants

    Peters, A. A., Oyarzun, D. A., Silva, E. I. & Salgado, M. E., 2 Apr 2015, 2009 European Control Conference, ECC 2009. Institute of Electrical and Electronics Engineers (IEEE), p. 231-235 5 p. 7074409

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  13. Selective RNA Sequestration Mediated by a Heat-Sensing Disordered Protein Region

    Drummond, D. A., Pilipenko, E., Riback, J., Scott, J., Rojek, A., Budnik, B., Wallace, E. & Katanski, C., Apr 2015, In : The FASEB Journal. 29, 1 Supplement

    Research output: Contribution to journalArticle

  14. Spontaneous action potentials and neural coding in unmyelinated axons

    O'Donnell, C. & van Rossum, M. C. W., Apr 2015, In : Neural Computation. 27, 4, p. 801-18 18 p.

    Research output: Contribution to journalArticle

  15. Network Analyses Reveal Novel Aspects of ALS Pathogenesis

    Sanhueza, M., Chai, A., Smith, C., McCray, B. A., Simpson, T. I., Taylor, J. P. & Pennetta, G., 31 Mar 2015, In : PLoS Genetics. 11, 3, e1005107.

    Research output: Contribution to journalArticle

  16. M3D: a kernel-based test for spatially correlated changes in methylation profiles

    Mayo, T., Schweikert, G. & Sanguinetti, G., 6 Mar 2015, In : Bioinformatics. 31, 6, p. 809-816 8 p.

    Research output: Contribution to journalArticle

  17. Mechanistic links between cellular trade-offs, gene expression, and growth

    Weisse, A., Oyarzun, D., Danos, V. & Swain, P., 3 Mar 2015, In : Proceedings of the National Academy of Sciences. 112, 9, p. E1038-1047 9 p.

    Research output: Contribution to journalArticle

  18. Branching and bounding improvements for global optimization algorithms with Lipschitz continuity properties

    Cartis, C., Fowkes, J. M. & Gould, N. I. M., Mar 2015, In : Journal of Global Optimization. 61, 3, p. 429-457 29 p.

    Research output: Contribution to journalArticle

  19. Noise Propagation in Synthetic Gene Circuits for Metabolic Control

    Oyarzún, D. A., Lugagne, J-B. & Stan, G-B. V., 20 Feb 2015, In : ACS Synthetic Biology. 4, 2, p. 116-125 10 p.

    Research output: Contribution to journalArticle

  20. Dynamics of Elongation Factor 2 Kinase Regulation in Cortical Neurons in Response to Synaptic Activity

    Kenney, J. W., Sorokina, O., Genheden, M., Sorokin, A., Armstrong, J. D. & Proud, C. G., 18 Feb 2015, In : Journal of Neuroscience. 35, 7, p. 3034-3047 14 p.

    Research output: Contribution to journalArticle

  21. The influence of population size, noise strength and behavioral task on best-encoded stimulus for neurons with unimodal or monotonic tuning curves

    Yarrow, S. & Seriés, P., 17 Feb 2015, In : Frontiers in Computational Neuroscience. 9

    Research output: Contribution to journalArticle

  22. What, if anything, are topological maps for?

    Wilson, S. P. & Bednar, J. A., 11 Feb 2015, In : Developmental neurobiology.

    Research output: Contribution to journalArticle

  23. Polymorphisms Near TBX5 and GDF7 Are Associated With Increased Risk for Barrett’s Esophagus

    Palles, C., Chegwidden, L., Li, X., Findlay, J. M., Farnham, G., Castro Giner, F., Peppelenbosch, M. P., Kovac, M., Adams, C. L., Prenen, H., Briggs, S., Harrison, R., Sanders, S., Macdonald, D., Haigh, C., Tucker, A., Love, S., Nanji, M., Decaestecker, J., Ferry, D. & 78 others, Rathbone, B., Hapeshi, J., Barr, H., Moayyedi, P., Watson, P., Zietek, B., Maroo, N., Gay, L., Underwood, T., Boulter, L., Mcmurtry, H., Monk, D., Patel, P., Ragunath, K., Al Dulaimi, D., Murray, I., Koss, K., Veitch, A., Trudgill, N., Nwokolo, C., Rembacken, B., Atherfold, P., Green, E., Ang, Y., Kuipers, E. J., Chow, W., Paterson, S., Kadri, S., Beales, I., Grimley, C., Mullins, P., Beckett, C., Farrant, M., Dixon, A., Kelly, S., Johnson, M., Wajed, S., Dhar, A., Sawyer, E., Roylance, R., Onstad, L., Gammon, M. D., Corley, D. A., Shaheen, N. J., Bird, N. C., Hardie, L. J., Reid, B. J., Ye, W., Liu, G., Romero, Y., Bernstein, L., Wu, A. H., Casson, A. G., Fitzgerald, R., Whiteman, D. C., Risch, H. A., Levine, D. M., Vaughan, T. L., Verhaar, A. P., Van Den Brande, J., Toxopeus, E. L., Spaander, M. C., Wijnhoven, B. P. L., Van Der Laan, L. J. W., Krishnadath, K., Wijmenga, C., Trynka, G., Mcmanus, R., Reynolds, J. V., O’sullivan, J., Macmathuna, P., Mcgarrigle, S. A., Kelleher, D., Vermeire, S., Cleynen, I., Bisschops, R., Tomlinson, I. & Jankowski, J., 1 Feb 2015, In : Gastroenterology. 148, 2, p. 367-378

    Research output: Contribution to journalArticle

  24. A Framework for Characterizing an Economy by its Energy and Socio-Economic Activities

    Roberts, S., Axon, C., Foran, B., Goddard, N. & Warr, B. S., Feb 2015, In : Sustainable Cities and Society. 14, p. 99-113 15 p.

    Research output: Contribution to journalArticle

  25. The Supervised Hierarchical Dirichlet Process

    Dai, A. M. & Storkey, A. J., Feb 2015, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 2, p. 243-255 13 p.

    Research output: Contribution to journalArticle

  26. Dynamic optimization of metabolic networks coupled with gene expression

    Waldherr, S., Oyarzún, D. A. & Bockmayr, A., 21 Jan 2015, In : Journal of Theoretical Biology. 365, p. 469-485 17 p.

    Research output: Contribution to journalArticle

  27. The Pascal Visual Object Classes Challenge: A Retrospective

    Everingham, M., Eslami, S. M. A., Van Gool, L., Williams, C. K. I., Winn, J. & Zisserman, A., Jan 2015, In : International Journal of Computer Vision. 111, 1, p. 98-136 39 p.

    Research output: Contribution to journalArticle

  28. Adaptive Stochastic Primal-Dual Coordinate Descent for Separable Saddle Point Problems

    Zhu, Z. & Storkey, A., 2015, Machine Learning and Knowledge Discovery in Databases: European Conference, ECML PKDD 2015, Porto, Portugal, September 7-11, 2015, Proceedings, Part I. Appice, A., Rodrigues, P. P., Santos Costa, V., Soares, C., Gama, J. & Jorge, A. (eds.). Springer International Publishing, p. 645-658 14 p. (Lecture Notes in Computer Science; vol. 9284).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Aggregation Under Bias: Rényi Divergence Aggregation and Its Implementation via Machine Learning Markets

    Storkey, A. J., Zhu, Z. & Hu, J., 2015, Machine Learning and Knowledge Discovery in Databases: European Conference, ECML PKDD 2015, Porto, Portugal, September 7-11, 2015, Proceedings, Part I. Appice, A., Rodrigues, P. P., Santos Costa, V., Soares, C., Gama, J. & Jorge, A. (eds.). Springer International Publishing, p. 560-574 15 p. (Lecture Notes in Computer Science; vol. 9284).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  30. Brain white matter structure and information processing speed in healthy older age

    Kuznetsova, K., Munoz-Maniega, S., Ritchie, S., Cox, S., Storkey, A., Starr, J., Wardlaw, J., Deary, I. & Bastin, M., 2015, In : Brain Structure and Function. 21, 6, p. 3323-3235

    Research output: Contribution to journalArticle

  31. Chapter Six – Genetic Analysis of Drosophila Circadian Behavior in Seminatural Conditions

    Green, E. W., O'Callaghan, E. K., Pegoraro, M., Armstrong, J. D., Costa, R. & Kyriacou, C. P., 2015, Circadian Rhythms and Biological Clocks, Part A. Sehgal, A. (ed.). Academic Press, p. 121-133 13 p. (Methods in Enzymology; vol. 559).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  32. Covariance-Controlled Adaptive Langevin Thermostat for Large-Scale Bayesian Sampling

    Shang, X., Zhu, Z., Leimkuhler, B. & Storkey, A., 2015, Neural Information Processing Systems (NIPS). 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Discriminative Switching Linear Dynamical Systems applied to Physiological Condition Monitoring

    Georgatzis, K. & Williams, C. K. I., 2015, 31st Conference on Uncertainty in Artificial Intelligence (UAI 2015). 10 p. 77

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  34. Drosophila circadian rhythms in semi-natural environments; the summer afternoon component is not an artifact and requires TrpA1 channels

    Green, E. W., O'Callaghan, E. K., Hansen, C. N., Bastianello, S., Bhutani, S., Vanin, S., Armstrong, J. D., Costa, R. & Kyriacou, C. P., 2015, In : Proceedings of the National Academy of Sciences. 112, 28, p. 8702-8707 6 p.

    Research output: Contribution to journalArticle

  35. Efficient stochastic simulation of systems with multiple time scales via statistical abstraction

    Bortolussi, L., Milios, D. & Sanguinetti, G., 2015, Computational Methods in Systems Biology: 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, Proceedings. Springer International Publishing, p. 40-51 12 p. (Lecture Notes in Computer Science; vol. 9308).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  36. Experimental design for inference over the A. thaliana circadian clock network

    Trejo-Banos, D., Millar, A. J. & Sanguinetti, G., 2015, Computational Methods in Systems Biology: 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, Proceedings. Springer International Publishing, p. 28-39 12 p. (Lecture Notes in Computer Science; vol. 9308).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  37. Face Painting: querying art with photos

    Crowley, E., Parkhi, O. M. & Zisserman, A., 2015, British Machine Vision Conference, 2015.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Gating Current

    Sterratt, D. C., 2015, Encyclopedia of Computational Neuroscience. Jaeger, D. & Jung, R. (eds.). Springer New York, p. 1270-1272 3 p.

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  39. Goldman-Hodgkin-Katz Equations

    Sterratt, D. C., 2015, Encyclopedia of Computational Neuroscience. Jaeger, D. & Jung, R. (eds.). Springer New York, p. 1300-1302 3 p.

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  40. In Search of Art

    Crowley, E. J. & Zisserman, A., 2015, Computer Vision - ECCV 2014 Workshops: Zurich, Switzerland, September 6-7 and 12, 2014, Proceedings, Part I. Agapito, L., Bronstein, M. M. & Rother, C. (eds.). Cham: Springer International Publishing, p. 54-70 17 p. (Lecture Notes in Computer Science; vol. 8925).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  41. Latent Bayesian melding for integrating individual and population models

    Zhong, M., Goddard, N. & Sutton, C., 2015, Advances in Neural Information Processing Systems 28 (NIPS 2015). p. 3617-3625 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  42. Le cerveau est-il une machine Bayésienne

    Series, P., 2015, (Accepted/In press) Les méthodes bayésiennes, sciences et épistémologie. Drouet, I. (ed.). 16 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  43. MADE: Masked Autoencoder for Distribution Estimation

    Germain, M., Gregor, K., Murray, I. & Larochelle, H., 2015, Proceedings of The 32nd International Conference on Machine Learning. Lille, France: Journal of Machine Learning Research: Workshop and Conference Proceedings, Vol. 37. p. 881-889 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. Machine Learning Methods in Statistical Model Checking and System Design – Tutorial

    Bortolussi, L., Milios, D. & Sanguinetti, G., 2015, Runtime Verification: 6th International Conference, RV 2015, Vienna, Austria, September 22-25, 2015. Proceedings. Bartocci, E. & Majumdar, R. (eds.). Cham: Springer International Publishing, p. 323-341 19 p. (Lecture Notes in Computer Science; vol. 9333).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  45. Modelling acoustic feature dependencies with artificial neural networks: Trajectory-RNADE

    Uria, B., Murray, I., Renals, S., Valentini-Botinhao, C. & Bridle, J., 2015, Acoustics, Speech and Signal Processing (ICASSP), 2015 IEEE International Conference on . IEEE Signal Processing Society Press, p. 4465-4469 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Nernst Equation

    Sterratt, D. C., 2015, Encyclopedia of Computational Neuroscience. Jaeger, D. & Jung, R. (eds.). Springer New York, p. 1843-1844 2 p.

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  47. Nomenclature of Ion Channels (IUPHAR Scheme)

    Sterratt, D. C., 2015, Encyclopedia of Computational Neuroscience. Jaeger, D. & Jung, R. (eds.). Springer New York, p. 2102-2104 3 p.

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  48. Python in Neuroscience II

    Davison, A. P. (ed.), Diesmann, M. (ed.), Gewaltig, M-O. (ed.), Ghosh, S. S. (ed.), Perez, F. (ed.), Muller, E. (ed.), Bednar, J. A. (ed.), Thirion, B. (ed.) & Halchenko, Y. (ed.), 2015, Frontiers Media SA.

    Research output: Book/ReportBook

  49. Q10: the Effect of Temperature on Ion Channel Kinetics

    Sterratt, D. C., 2015, Encyclopedia of Computational Neuroscience. Jaeger, D. & Jung, R. (eds.). Springer New York, p. 2551-2552 2 p.

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  50. Stability of Neuronal Networks with Homeostatic Regulation

    Van Rossum, M. & Pelko, M., 2015, In : PLoS Computational Biology. 20 p.

    Research output: Contribution to journalArticle

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