Edinburgh Research Explorer

Dr Anagha Joshi

(Former employee or visitor)

  1. Delineating biological and technical variance in single cell expression data

    Arzalluz-Luque, Á., Devailly, G., Mantsoki, A. & Joshi, A., Sep 2017, In : International Journal of Biochemistry and Cell Biology. 90, p. 161-166

    Research output: Contribution to journalArticle

  2. Long-lived Self-renewing Bone Marrow-derived Macrophages Displace Embryo-derived Cells to Inhabit Adult Serous Cavities

    Bain, C. C., Hawley, C. A., Garner, H., Scott, C. L., Schridde, A., Steers, N., Mack, M., Joshi, A., Guilliams, M., Geissmann, F., Mowat, A. M. & Jenkins, S. J., 13 Jun 2016, In : Nature Communications. 7, ncomms11852.

    Research output: Contribution to journalArticle

  3. Functional transcription factor target discovery via compendia of binding and expression profiles

    Banks, C. J., Joshi, A. & Michoel, T., 2016, In : Scientific Reports. 6, 10 p., 20649.

    Research output: Contribution to journalArticle

  4. Deducing the stage of origin of Wilms tumours from a developmental series of Wt1 mutants

    Berry, R. L., Ozdemir, D. D., Aronow, B., Lindstrom, N., Dudnakova, T., Thornburn, A., Perry, P., Baldock, R., Armit, C., Joshi, A., Jeanpierre, C., Shan, J., Vainio, S., Baily, J., Brownstein, D., Davies, J., Hastie, N. D. & Hohenstein, P., Aug 2015, In : Disease Models & Mechanisms. 8, 8, p. 903-17 15 p.

    Research output: Contribution to journalArticle

  5. Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules

    Bonnet, E., Tatari, M., Joshi, A., Michoel, T., Marchal, K., Berx, G. & de Peer, Y. V., 14 Apr 2010, In : PLoS ONE. 5, 4, p. 1-10 10 p., e10162.

    Research output: Contribution to journalArticle

  6. HOX-mediated LMO2 expression in embryonic mesoderm is recapitulated in acute leukaemias

    Calero-Nieto, F. J., Joshi, A., Bonadies, N., Kinston, S., Chan, W-I., Gudgin, E., Pridans, C., Landry, J-R., Kikuchi, J., Huntly, B. J. & Gottgens, B., 27 May 2013, In : Oncogene.

    Research output: Contribution to journalArticle

  7. The transcriptional coactivator Cbp regulates self-renewal and differentiation in adult hematopoietic stem cells.

    Chan, WI., Hannah, RL., Dawson, MA., Pridans, C., Foster, D., Joshi, A., Gottgens, B., Van Deursen, JM. & Huntly, BJP., 2011, In : Molecular and Cellular Biology. 31, 24, p. 5046-5060

    Research output: Contribution to journalArticle

  8. Insights into mammalian transcription control by systematic analysis of ChIP sequencing data

    Devailly, G. & Joshi, A., 20 Nov 2018, In : BMC Bioinformatics. 19, Suppl 14, p. 409

    Research output: Contribution to journalArticle

  9. Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource

    Devailly, G., Mantsoki, A., Michoel, T. & Joshi, A., 21 Dec 2015, In : FEBS Letters. 589, 24, part B, p. 3866–3870

    Research output: Contribution to journalArticle

  10. Transcription Control in Human Cell Types by Systematic Analysis of ChIP Sequencing Data from the ENCODE

    Devailly, G. & Joshi, A., 1 Apr 2017, Lecture Notes in Computer Science. Springer, Vol. 10209. p. 315-324 Chapter 29. (Bioinformatics and Biomedical Engineering; vol. 10209).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  11. Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data

    Devailly, G., Mantsoki, A. & Joshi, A., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3354-3356

    Research output: Contribution to journalArticle

  12. A promoter-level mammalian expression atlas

    Forrest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jorgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 32 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Alam, I., Albanese, D., Altschuler, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Fisher, M. E., Ha, T. J., Joshi, A., Meynert, A., Prendergast, J. G. D., Summers, K. M., Freeman, T. C., Taylor, M. S., Hume, D. A., FANTOM Consortium & RIKEN PMI CLST DGT, 26 Mar 2014, In : Nature. 507, 7493, p. 462-+ 22 p.

    Research output: Contribution to journalArticle

  13. Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types

    Giotti, B., Joshi, A. & Freeman, T. C., 5 Jan 2017, In : BMC Genomics. 18, 1, p. 30

    Research output: Contribution to journalArticle

  14. Exploring the abomasal lymph node transcriptome for genes associated with resistance to the sheep nematode Teladorsagia circumcincta

    Gossner, A., Wilkie, H., Joshi, A. & Hopkins, J., 2013, In : Veterinary Research. 44, 13 p., 68.

    Research output: Contribution to journalArticle

  15. A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms

    Hannah, R., Joshi, A., Wilson, N. K., Kinston, S. & Goettgens, B., May 2011, In : Experimental Hematology. 39, 5, p. 531-541 11 p.

    Research output: Contribution to journalArticle

  16. CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

    Hasegawa, Y., Tang, D., Takahashi, N., Hayashizaki, Y., Forrest, A. R. R., Suzuki, H., FANTOM Consortium & Joshi, A., 2014, In : Scientific Reports. 4, 5228.

    Research output: Contribution to journalArticle

  17. The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

    Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., FANTOM consortium & Huminiecki, L., 18 Dec 2015, In : PLoS Biology. 13, 12, e1002315.

    Research output: Contribution to journalArticle

  18. Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals

    Joshi, A., Beck, Y. & Michoel, T., 2012, In : Febs Journal. 279, 18, p. 3501-3512 12 p.

    Research output: Contribution to journalArticle

  19. Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

    Joshi, A., Van de Peer, Y. & Michoel, T., Nov 2011, In : Nucleic Acids Research. 39, 21, p. 9108-9117 10 p.

    Research output: Contribution to journalArticle

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