Edinburgh Research Explorer

Dr Anagha Joshi

(Former employee or visitor)

  1. 2018
  2. Insights into mammalian transcription control by systematic analysis of ChIP sequencing data

    Devailly, G. & Joshi, A., 20 Nov 2018, In : BMC Bioinformatics. 19, Suppl 14, p. 409

    Research output: Contribution to journalArticle

  3. Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor

    Vipin, D., Wang, L., Devailly, G., Michoel, T. & Joshi, A., 15 Nov 2018, In : International Journal of Molecular Sciences. 19, 11

    Research output: Contribution to journalArticle

  4. LIF-dependent survival of embryonic stem cells is regulated by a novel palmitoylated Gab1 signalling protein

    Sutherland, L., Ruhe, M., Gattegno-Ho, D., Mann, K., Greaves, J., Koscielniak, M., Meek, S., Lu, Z., Waterfall, M., Taylor, R., Tsakiridis, A., Brown, H., Maciver, S., Joshi, A., Clinton, M., Chamberlain, L. H., Smith, A. & Burdon, T., Sep 2018, In : Journal of Cell Science. 131, 18, 222257.

    Research output: Contribution to journalArticle

  5. Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells

    Mantsoki, A., Devailly, G. & Joshi, A., 20 Feb 2018, In : BMC Developmental Biology. 18, 1, p. 2

    Research output: Contribution to journalArticle

  6. 2017
  7. Delineating biological and technical variance in single cell expression data

    Arzalluz-Luque, Á., Devailly, G., Mantsoki, A. & Joshi, A., Sep 2017, In : International Journal of Biochemistry and Cell Biology. 90, p. 161-166

    Research output: Contribution to journalArticle

  8. Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs

    Reyes, P. F. L., Michoel, T., Joshi, A. & Devailly, G., 26 Aug 2017, In : Computational and Structural Biotechnology Journal. 15, p. 425-432 8 p.

    Research output: Contribution to journalArticle

  9. Transcription Control in Human Cell Types by Systematic Analysis of ChIP Sequencing Data from the ENCODE

    Devailly, G. & Joshi, A., 1 Apr 2017, Lecture Notes in Computer Science. Springer, Vol. 10209. p. 315-324 Chapter 29. (Bioinformatics and Biomedical Engineering; vol. 10209).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  10. A Transcriptional switch point during hematopoietic stem and progenitor cell ontogeny

    Sugiyama, D., Joshi, A., Kulkeaw, K., Tan, K. S., Yokoo-Inoue, T., Mizuochi-Yanagi, C., Yasuda, K., Doi, A., Iino, T., Itoh, M., Nagao-Sato, S., Tani, K., Akashi, K., Hayashizaki, Y., Suzuki, H., Kawaji, H., Carninci, P. & Forrest, A. R. R., 24 Jan 2017, In : Stem Cells and Development. 26, 5, p. 314-327

    Research output: Contribution to journalArticle

  11. Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types

    Giotti, B., Joshi, A. & Freeman, T. C., 5 Jan 2017, In : BMC Genomics. 18, 1, p. 30

    Research output: Contribution to journalArticle

  12. 2016
  13. Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data

    Devailly, G., Mantsoki, A. & Joshi, A., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3354-3356

    Research output: Contribution to journalArticle

  14. Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data

    Mantsoki, A., Devailly, G. & Joshi, A., Aug 2016, In : Computational Biology and Chemistry. 63, p. 52-61

    Research output: Contribution to journalArticle

  15. Long-lived Self-renewing Bone Marrow-derived Macrophages Displace Embryo-derived Cells to Inhabit Adult Serous Cavities

    Bain, C., Hawley, C. A., Garner, H., Scott, C. L., Schridde, A., Steers, N., Mack, M., Joshi, A., Guilliams, M., Geissmann, F., Mowat, A. M. & Jenkins, S., 13 Jun 2016, In : Nature Communications. 7, ncomms11852.

    Research output: Contribution to journalArticle

  16. Corrigendum: CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells

    Mantsoki, A., Devailly, G. & Joshi, A., 23 May 2016, In : Scientific Reports. 6, p. 25682

    Research output: Contribution to journalComment/debate

  17. Functional transcription factor target discovery via compendia of binding and expression profiles

    Banks, C. J., Joshi, A. & Michoel, T., 2016, In : Scientific Reports. 6, 10 p., 20649.

    Research output: Contribution to journalArticle

  18. 2015
  19. Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource

    Devailly, G., Mantsoki, A., Michoel, T. & Joshi, A., 21 Dec 2015, In : FEBS Letters. 589, 24, part B, p. 3866–3870

    Research output: Contribution to journalArticle

  20. The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

    Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., FANTOM consortium & Huminiecki, L., 18 Dec 2015, In : PLoS Biology. 13, 12, e1002315.

    Research output: Contribution to journalArticle

  21. CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells

    Mantsoki, A., Devailly, G. & Joshi, A., 20 Nov 2015, In : Scientific Reports. 5, 16791.

    Research output: Contribution to journalArticle

  22. Deducing the stage of origin of Wilms tumours from a developmental series of Wt1 mutants

    Berry, R. L., Ozdemir, D. D., Aronow, B., Lindstrom, N., Dudnakova, T., Thornburn, A., Perry, P., Baldock, R., Armit, C., Joshi, A., Jeanpierre, C., Shan, J., Vainio, S., Baily, J., Brownstein, D., Davies, J., Hastie, N. D. & Hohenstein, P., Aug 2015, In : Disease Models & Mechanisms. 8, 8, p. 903-17 15 p.

    Research output: Contribution to journalArticle

  23. Comparative Analysis of Bivalent Domains in Mammalian Embryonic Stem Cells

    Mantsoki, A. & Joshi, A., 15 Apr 2015, Bioinformatics and Biomedical Engineering. Springer International Publishing, p. 391-402

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  24. Multi-species network inference improves gene regulatory network reconstruction for early embryonic development in Drosophila

    Joshi, A., Beck, Y. & Michoel, T., Apr 2015, In : Journal of Computational Biology. 22, 4, p. 253-65 13 p.

    Research output: Contribution to journalArticle

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