Edinburgh Research Explorer

Andrew Millar

Chair of Systems Biology

  1. 1991
  2. Circadian Control of cab Gene Transcription and mRNA Accumulation in Arabidopsis

    Millar, A. J. & Kay, S. A., 1991, In: The Plant Cell. 3, 5, p. 541-550 10 p.

    Research output: Contribution to journalArticlepeer-review

  3. 1992
  4. A novel circadian phenotype based on firefly luciferase expression in transgenic plants

    Millar, A. J., Short, S. R., Chua, N. H. & Kay, S. A., 1992, In: The Plant Cell. 4, 9, p. 1075-87 13 p.

    Research output: Contribution to journalArticlepeer-review

  5. Firefly luciferase as a reporter of regulated gene expression in plants

    Millar, A., 1992, In: Plant Molecular Biology Reporter. 10, p. 324-337 14 p.

    Research output: Contribution to journalArticlepeer-review

  6. 22 Circadian-regulated gene transcription in Arabidopsis thaliana

    Kay, S. A. & Millar, A. J., 1 Jan 1992, In: Discussions in Neuroscience. 8, 2-3, p. 103-105 3 p.

    Research output: Contribution to journalArticlepeer-review

  7. Firefly luciferase as a reporter of regulated gene expression in higher plants

    Millar, A. J., Short, S. R., Hiratsuka, K., Chua, N. & Kay, S. A., 1 Nov 1992, In: Plant Molecular Biology Reporter. 10, 4, p. 324-337

    Research output: Contribution to journalArticlepeer-review

  8. 1993
  9. Circadian regulated CAB gene expression in higher plants

    Kay, S. A. & Millar, A., 1993, The Molecular Genetics of Biological Rhythms. Young, M. W. (ed.). MARCEL DEKKER

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. 1994
  11. Phytochrome phototransduction pathways

    Millar, A. J., McGrath, R. B. & Chua, N. H., 1994, In: Annual review of genetics. 28, p. 325-49 25 p.

    Research output: Contribution to journalArticlepeer-review

  12. 1995
  13. Circadian clock mutants in Arabidopsis identified by luciferase imaging

    Millar, A. J., Carré, I. A., Strayer, C. A., Chua, N. H. & Kay, S. A., 1995, In: Science. 267, 5201, p. 1161-3 3 p.

    Research output: Contribution to journalArticlepeer-review

  14. New models in vogue for circadian clocks

    Kay, S. A. & Millar, A. J., 1995, In: Cell. 83, 3, p. 361-4 4 p.

    Research output: Contribution to journalArticlepeer-review

  15. The regulation of circadian period by phototransduction pathways in Arabidopsis

    Millar, A. J., Straume, M., Chory, J., Chua, N. H. & Kay, S. A., 1995, In: Science. 267, 5201, p. 1163-6 4 p.

    Research output: Contribution to journalArticlepeer-review

  16. THE GENETICS OF CIRCADIAN CLOCK REGULATION IN ARABIDOPSIS

    Millar, A., STRAUME, M., CARRE, I. A., STRAYER, C. A., CHORY, J., CHUA, N. H. & KAY, S. A., 5 Jan 1995, In: Journal of cellular biochemistry. p. 158-158 1 p.

    Research output: Contribution to journalSpecial issue

  17. LIGHT SIGNAL-TRANSDUCTION MUTANTS OF ARABIDOPSIS

    MAYER, R., MILLAR, A., KAY, S. & CHUA, N. H., 10 Mar 1995, In: Journal of cellular biochemistry. p. 496-496 1 p.

    Research output: Contribution to journalSpecial issue

  18. PHOTOMORPHOGENIC MUTATIONS AFFECT THE CIRCADIAN PERIOD OF CAB2 - LUCIFERASE EXPRESSION IN ARABIDOPSIS

    SOMERS, D. E., Millar, A. & KAY, S. A., 10 Mar 1995, In: Journal of cellular biochemistry. p. 497-497 1 p.

    Research output: Contribution to journalSpecial issue

  19. 1996
  20. Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant

    Hicks, K. A., Millar, A. J., Carré, I. A., Somers, D. E., Straume, M., Meeks-Wagner, D. R. & Kay, S. A., 1996, In: Science. 274, 5288, p. 790-2 3 p.

    Research output: Contribution to journalArticlepeer-review

  21. Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis

    Millar, A. J. & Kay, S. A., 1996, In: Proceedings of the National Academy of Sciences (PNAS). 93, 26, p. 15491-6 6 p.

    Research output: Contribution to journalArticlepeer-review

  22. Real-time imaging of transcription in living cells and tissues

    White, M. R., Wood, C. D. & Millar, A. J., 1996, In: Biochemical Society Transactions. 24, 3, p. 411S

    Research output: Contribution to journalArticle

  23. 1997
  24. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock

    Anderson, S. L., Somers, D. E., Millar, A. J., Hanson, K., Chory, J. & Kay, S. A., 1997, In: The Plant Cell. 9, 10, p. 1727-43 17 p.

    Research output: Contribution to journalArticlepeer-review

  25. Circadian rhythms: PASsing time

    Millar, A. J., 1997, In: Current biology : CB. 7, 8, p. R474-6

    Research output: Contribution to journalArticlepeer-review

  26. The genetics of phototransduction and circadian rhythms in Arabidopsis

    Millar, A. J. & Kay, S. A., 1997, In: BioEssays. 19, 3, p. 209-14 6 p.

    Research output: Contribution to journalArticlepeer-review

  27. Phytochrome-induced intercellular signalling activates CAB:luciferase gene expression

    Bischoff, F., Millar, A. J., Kay, S. A. & Furuya, M., Oct 1997, In: The Plant Journal. 12, 4, p. 839-849 11 p.

    Research output: Contribution to journalArticlepeer-review

  28. 1998
  29. An Arabidopsis mutant hypersensitive to red and far-red light signals

    Genoud, T., Millar, A. J., Nishizawa, N., Kay, S. A., Schäfer, E., Nagatani, A. & Chua, N. H., 1998, In: The Plant Cell. 10, 6, p. 889-904 16 p.

    Research output: Contribution to journalArticlepeer-review

  30. Biological Rhythms and Photoperiodism in Plants

    Lumsden, P. J. (ed.) & Millar, A. J. . (ed.), 1998, Oxford: Bios Scientific Publishers. 284 p. (Environmental plant biology series)

    Research output: Book/ReportBook

  31. Light Regulation and Biological Clocks

    Millar, A., Whitelam, G. C., Anderson, M. L. (ed.) & Roberts, J. A. . (ed.), 1998, Arabidopsis. Sheffield, England: Sheffield Academic Press, 20 p. (Annual plant reviews; vol. v. 1).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  32. The cellular organisation of circadian rhythms in plants: Not one but many clocks.

    Millar, A., 1998, Biological Rhythms and Photoperiodism in Plants. Bios Scientific Publishers, 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  33. Molecular intrigue between phototransduction and the circadian clock

    Millar, A. J., May 1998, In: Annals of Botany. 81, 5, p. 581-587 7 p.

    Research output: Contribution to journalArticlepeer-review

  34. 1999
  35. Circadian biology: clocks for the real world

    McWatters, H., Dunlap, J. C. & Millar, A. J., 1999, In: Current biology : CB. 9, 17, p. R633-5

    Research output: Contribution to journalArticlepeer-review

  36. Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis

    Dowson-Day, M. J. & Millar, A. J., 1999, In: The Plant Journal. 17, 1, p. 63-71 9 p.

    Research output: Contribution to journalArticlepeer-review

  37. Natural allelic variation identifies new genes in the Arabidopsis circadian system

    Swarup, K., Alonso-Blanco, C., Lynn, J. R., Michaels, S. D., Amasino, R. M., Koornneef, M. & Millar, A. J., 1999, In: The Plant Journal. 20, 1, p. 67-77 11 p.

    Research output: Contribution to journalArticlepeer-review

  38. The circadian clock controls the expression pattern of the circadian input photoreceptor, phytochrome B

    Bognár, L. K., Hall, A., Adám, E., Thain, S. C., Nagy, F. & Millar, A. J., 1999, In: Proceedings of the National Academy of Sciences (PNAS). 96, 25, p. 14652-7 6 p.

    Research output: Contribution to journalArticlepeer-review

  39. Tansley review no. 103 - Biological clocks in Arabidopsis thaliana

    Millar, A. J., Feb 1999, In: New Phytologist. 141, 2, p. 175-197 23 p.

    Research output: Contribution to journalLiterature reviewpeer-review

  40. 2000
  41. Clock proteins: turned over after hours?

    Millar, A. J., 2000, In: Current biology : CB. 10, 14, p. R529-31

    Research output: Contribution to journalArticlepeer-review

  42. Functional independence of circadian clocks that regulate plant gene expression

    Thain, S. C., Hall, A. & Millar, A. J., 2000, In: Current biology : CB. 10, 16, p. 951-6 6 p.

    Research output: Contribution to journalArticlepeer-review

  43. How plants tell the time

    Murtas, G. & Millar, A. J., 2000, In: Current opinion in plant biology. 3, 1, p. 43-6 4 p.

    Research output: Contribution to journalArticlepeer-review

  44. Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time

    Reed, J. W., Nagpal, P., Bastow, R. M., Solomon, K. S., Dowson-Day, M. J., Elumalai, R. P. & Millar, A. J., 2000, In: Plant physiology. 122, 4, p. 1149-60 12 p.

    Research output: Contribution to journalArticlepeer-review

  45. The ELF3 zeitnehmer regulates light signalling to the circadian clock

    McWatters, H. G., Bastow, R. M., Hall, A. & Millar, A. J., 2000, In: Nature. 408, 6813, p. 716-20 5 p.

    Research output: Contribution to journalArticlepeer-review

  46. 2001
  47. Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis

    Tóth, R., Kevei, E., Hall, A., Millar, A. J., Nagy, F. & Kozma-Bognár, L., 2001, In: Plant physiology. 127, 4, p. 1607-16 10 p.

    Research output: Contribution to journalArticlepeer-review

  48. Conditional circadian regulation of PHYTOCHROME A gene expression

    Hall, A., Kozma-Bognár, L., Tóth, R., Nagy, F. & Millar, A. J., 2001, In: Plant physiology. 127, 4, p. 1808-18 11 p.

    Research output: Contribution to journalArticlepeer-review

  49. Light responses of a plastic plant

    Millar, A. J., 2001, In: Nature Genetics. 29, 4, p. 357-8 2 p.

    Research output: Contribution to journalArticlepeer-review

  50. Watching the hands of the Arabidopsis biological clock

    Davis, S. J. & Millar, A. J., 2001, In: Genome Biology. 2, 3, 4 p., reviews1008-reviews1008.4 .

    Research output: Contribution to journalArticlepeer-review

  51. 2002
  52. Distinct regulation of CAB and PHYB gene expression by similar circadian clocks

    Hall, A., Kozma-Bognár, L., Bastow, R. M., Nagy, F. & Millar, A. J., 2002, In: The Plant Journal. 32, 4, p. 529-37 9 p.

    Research output: Contribution to journalArticlepeer-review

  53. QTL for timing: a natural diversity of clock genes

    Salathia, N., Edwards, K. & Millar, A. J., 2002, In: Trends in Genetics. 18, 3, p. 115-8 4 p.

    Research output: Contribution to journalArticlepeer-review

  54. The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana

    Doyle, M. R., Davis, S. J., Bastow, R. M., McWatters, H. G., Kozma-Bognár, L., Nagy, F., Millar, A. J. & Amasino, R. M., 2002, In: Nature. 419, 6902, p. 74-7 4 p.

    Research output: Contribution to journalArticlepeer-review

  55. The circadian clock that controls gene expression in Arabidopsis is tissue specific

    Thain, S. C., Murtas, G., Lynn, J. R., McGrath, R. B. & Millar, A. J., 2002, In: Plant physiology. 130, 1, p. 102-10 9 p.

    Research output: Contribution to journalArticlepeer-review

  56. 2003
  57. A suite of photoreceptors entrains the plant circadian clock

    Millar, A. J., 2003, In: Journal of biological rhythms. 18, 3, p. 217-26 10 p.

    Research output: Contribution to journalArticlepeer-review

  58. Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock

    Eriksson, M. E., Hanano, S., Southern, M. M., Hall, A. & Millar, A. J., 2003, In: Planta. 218, 1, p. 159-62 4 p.

    Research output: Contribution to journalArticlepeer-review

  59. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function

    Staiger, D., Allenbach, L., Salathia, N., Fiechter, V., Davis, S. J., Millar, A. J., Chory, J. & Fankhauser, C., 2003, In: Genes & Development. 17, 2, p. 256-68 13 p.

    Research output: Contribution to journalArticlepeer-review

  60. The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks

    Hall, A., Bastow, R. M., Davis, S. J., Hanano, S., McWatters, H. G., Hibberd, V., Doyle, M. R., Sung, S., Halliday, K. J., Amasino, R. M. & Millar, A. J., 2003, In: The Plant Cell. 15, 11, p. 2719-29 11 p.

    Research output: Contribution to journalArticlepeer-review

  61. The circadian clock. A plant's best friend in a spinning world

    Eriksson, M. E. & Millar, A. J., 2003, In: Plant physiology. 132, 2, p. 732-8 7 p.

    Research output: Contribution to journalArticlepeer-review

  62. 2004
  63. Circadian rhythms of ethylene emission in Arabidopsis

    Thain, S. C., Vandenbussche, F., Laarhoven, L. J. J., Dowson-Day, M. J., Wang, Z-Y., Tobin, E. M., Harren, F. J. M., Millar, A. J. & Van Der Straeten, D., 2004, In: Plant physiology. 136, 3, p. 3751-61 11 p.

    Research output: Contribution to journalArticlepeer-review

  64. Design principles underlying circadian clocks

    Rand, D. A., Shulgin, B. V., Salazar, D. & Millar, A. J., 2004, In: Journal of the Royal Society Interface. 1, 1, p. 119-30 12 p.

    Research output: Contribution to journalArticlepeer-review

  65. Enhancers of luminidependens define a role for brassinosteroids in floral promotion

    Domagalska, M., Schomburg, F. M., Millar, A. J., Amasino, R. M., Vierstra, R. M., Nagy, F. & Davis, S. J., 2004, In: Acta physiologiae plantarum. 26, 3, p. 30-30 1 p.

    Research output: Contribution to journalMeeting abstractpeer-review

  66. Input signals to the plant circadian clock

    Millar, A. J., 2004, In: Journal of Experimental Botany. 55, 395, p. 277-83 7 p.

    Research output: Contribution to journalArticlepeer-review

  67. The wild-type circadian period of Neurospora is encoded in the residual network of the null frq mutants

    Bain, E. L., Millar, A. J. & Turner, M. S., 2004, In: Journal of Theoretical Biology. 229, 3, p. 413-20 8 p.

    Research output: Contribution to journalArticlepeer-review

  68. 2005
  69. Biological clocks in theory and experiments

    Millar, A., 2005, In: BMC Bioinformatics. 6, Suppl 3, S2.

    Research output: Contribution to journalMeeting abstract

  70. Circadian genetics in the model higher plant, Arabidopsis thaliana

    Southern, M. M. & Millar, A. J., 2005, In: Methods in enzymology. 393, p. 23-35 13 p.

    Research output: Contribution to journalArticlepeer-review

  71. Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork

    Viczián, A., Kircher, S., Fejes, E., Millar, A. J., Schäfer, E., Kozma-Bognár, L. & Nagy, F., 2005, In: Plant and cell physiology. 46, 10, p. 1591-602 12 p.

    Research output: Contribution to journalArticlepeer-review

  72. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana

    Locke, J. C. W., Millar, A. J. & Turner, M. S., 2005, In: Journal of Theoretical Biology. 234, 3, p. 383-93 11 p.

    Research output: Contribution to journalArticlepeer-review

  73. Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock

    Edwards, K. D., Lynn, J. R., Gyula, P., Nagy, F. & Millar, A. J., 2005, In: Genetics. 170, 1, p. 387-400 14 p.

    Research output: Contribution to journalArticlepeer-review

  74. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage

    Dodd, A. N., Salathia, N., Hall, A., Kévei, E., Tóth, R., Nagy, F., Hibberd, J. M., Millar, A. J. & Webb, A. A. R., 2005, In: Science. 309, 5734, p. 630-3 4 p.

    Research output: Contribution to journalArticlepeer-review

  75. Extension of a genetic network model by iterative experimentation and mathematical analysis

    Locke, J. C. W., Southern, M. M., Kozma-Bognár, L., Hibberd, V., Brown, P. E., Turner, M. S. & Millar, A. J., 28 Jun 2005, In: Molecular Systems Biology. 1, 9 p., 2005.0013.

    Research output: Contribution to journalArticlepeer-review

  76. 2006
  77. Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana

    Locke, J. C. W., Kozma-Bognár, L., Gould, P. D., Fehér, B., Kevei, E., Nagy, F., Turner, M. S., Hall, A. & Millar, A. J., 2006, In: Molecular Systems Biology. 2, p. 59

    Research output: Contribution to journalArticlepeer-review

  78. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock

    Edwards, K. D., Anderson, P. E., Hall, A., Salathia, N. S., Locke, J. C. W., Lynn, J. R., Straume, M., Smith, J. Q. & Millar, A. J., 2006, In: The Plant Cell. 18, 3, p. 639-650 12 p.

    Research output: Contribution to journalArticlepeer-review

  79. FLOWERING LOCUS C-dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways

    Salathia, N., Davis, S. J., Lynn, J. R., Michaels, S. D., Amasino, R. M. & Millar, A. J., 2006, In: BMC Plant Biology. 6, 10.

    Research output: Contribution to journalArticlepeer-review

  80. Final report of the GARNet Advisory Committee on Arabidopsis Systems Biology in the UK, June 2006.

    GARNET Advisory Committee & Millar, A., 2006, 31 p.

    Research output: Book/ReportCommissioned report

  81. Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE

    Kevei, E., Gyula, P., Hall, A., Kozma-Bognár, L., Kim, W-Y., Eriksson, M. E., Tóth, R., Hanano, S., Fehér, B., Southern, M. M., Bastow, R. M., Viczián, A., Hibberd, V., Davis, S. J., Somers, D. E., Nagy, F. & Millar, A. J., 2006, In: Plant physiology. 140, 3, p. 933-45 13 p.

    Research output: Contribution to journalArticlepeer-review

  82. The molecular basis of temperature compensation in the Arabidopsis circadian clock

    Gould, P. D., Locke, J. C. W., Larue, C., Southern, M. M., Davis, S. J., Hanano, S., Moyle, R., Milich, R., Putterill, J., Millar, A. J. & Hall, A., 2006, In: The Plant Cell. 18, 5, p. 1177-87 11 p.

    Research output: Contribution to journalArticlepeer-review

  83. Uncovering the design principles of circadian clocks: mathematical analysis of flexibility and evolutionary goals

    Rand, D. A., Shulgin, B. V., Salazar, J. D. & Millar, A. J., 2006, In: Journal of Theoretical Biology. 238, 3, p. 616-35 20 p.

    Research output: Contribution to journalArticlepeer-review

  84. Biological clocks in theory and experiments

    Millar, A., Brown, P., Edwards, K., Hall, A., Locke, J., Rand, D., Anderson, P. & Smith, J., Apr 2006, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 143, 4, p. S140-S140 1 p.

    Research output: Contribution to journalArticle

  85. Mechanistic modelling of flowering regulators based on molecular data

    Millar, A., Brown, P., Saithong, T., Salazar, D., Locke, J., Carre, I. & Rand, D., Apr 2006, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 143, 4, p. S164-S164 1 p., 5.6.

    Research output: Contribution to journalArticle

  86. 2007
  87. Analysis of circadian leaf movement rhythms in Arabidopsis thaliana

    Edwards, K. D. & Millar, A. J., 2007, In: Methods in Molecular Biology. 362, p. 103-13 11 p.

    Research output: Contribution to journalArticlepeer-review

  88. Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1

    Kevei, E., Gyula, P., Fehér, B., Tóth, R., Viczián, A., Kircher, S., Rea, D., Dorjgotov, D., Schäfer, E., Millar, A. J., Kozma-Bognár, L. & Nagy, F., 2007, In: Current biology : CB. 17, 17, p. 1456-64 9 p.

    Research output: Contribution to journalArticlepeer-review

  89. Detection and resolution of genetic loci affecting circadian period in Brassica oleracea

    Salathia, N., Lynn, J. R., Millar, A. J. & King, G. J., 2007, In: TAG Theoretical and Applied Genetics. 114, 4, p. 683-92 10 p.

    Research output: Contribution to journalArticlepeer-review

  90. Development of a Novel Biosensor for the Detection of Arsenic in Drinking Water

    Aleksic, J., Bizzari, F., Cai, Y., Davidson, B., Mora, K. D., Ivakhno, S., Seshasayee, S. L., Nicholson, J., Wilson, J., Elfick, A., French, C., Kozma-Bognar, L., Ma, H. & Millar, A., 2007, In: IET Synthetic Biology. 1, 40940, p. 87-90 4 p.

    Research output: Contribution to journalArticlepeer-review

  91. ELF4 is required for oscillatory properties of the circadian clock

    McWatters, H. G., Kolmos, E., Hall, A., Doyle, M. R., Amasino, R. M., Gyula, P., Nagy, F., Millar, A. J. & Davis, S. J., 2007, In: Plant physiology. 144, 1, p. 391-401 11 p.

    Research output: Contribution to journalArticlepeer-review

  92. TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock

    Ding, Z., Millar, A. J., Davis, A. M. & Davis, S. J., 2007, In: The Plant Cell. 19, 5, p. 1522-36 15 p.

    Research output: Contribution to journalArticlepeer-review

  93. Dissecting and reconstructing the multi-loop mechanism of the circadian clock: Abstract, Society for Experimental Biology Annual Main Meeting 31st March 2007

    Millar, A., Rand, D., Goryanin, I., Saithong, T. & Edwards, K., Apr 2007, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 146, 4, p. S229-S229 1 p.

    Research output: Contribution to journalArticle

  94. 2008
  95. Reconstruction of transcriptional dynamics from gene reporter data using differential equations

    Finkenstädt, B., Heron, E. A., Komorowski, M., Edwards, K., Tang, S., Harper, C. V., Davis, J. R. E., White, M. R. H., Millar, A. J. & Rand, D. A., 2008, In: Bioinformatics. 24, 24, p. 2901-7 7 p.

    Research output: Contribution to journalArticlepeer-review

  96. Isoform switching facilitates period control in the Neurospora crassa circadian clock

    Akman, O. E., Locke, J. C. W., Tang, S., Carré, I., Millar, A. J. & Rand, D. A., Feb 2008, In: Molecular Systems Biology. 4, 11 p., 164.

    Research output: Contribution to journalArticlepeer-review

  97. Isoform switching facilitates period control in the Neurospora crassa circadian clock - Corrigendum

    Akman, O. E., Locke, J. C. W., Tang, S., Carre, I., Millar, A. J. & Rand, D. A., Apr 2008, In: Molecular Systems Biology. 4, p. - 1 p., 186.

    Research output: Contribution to journalArticlepeer-review

  98. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler

    Grzegorczyk, M., Husmeier, D., Edwards, K. D., Ghazal, P. & Millar, A. J., 15 Sep 2008, In: Bioinformatics. 24, 18, p. 2071-2078 8 p.

    Research output: Contribution to journalArticlepeer-review

  99. 2009
  100. Efficient Utility-based Clustering over High Dimensional Partition Spaces

    Liverani, S., Anderson, P. E., Edwards, K. D., Millar, A. J. & Smith, J. Q., 2009, In: Bayesian analysis. 4, 3, p. 539-572 34 p.

    Research output: Contribution to journalArticlepeer-review

  101. Mathematical model of the Arabidopsis photoperiod sensor: Salazar 2009 model

    Salazar, J. D., Saithong, T., Halliday, K., Rand, D. A. & Millar, A., 2009

    Research output: Other contribution

  102. Using higher-order dynamic Bayesian networks to model periodic data from the circadian clock of Arabidopsis Thaliana.

    Daly, R., Edwards, K. D., O'Neill, J. S., Aitken, S., Millar, A. & Girolami, M., 2009, Pattern Recognition in Bioinformatics: 4th IAPR International Conference, PRIB 2009, Sheffield, UK, September 7-9, 2009. Proceedings. Springer-Verlag GmbH, p. 67-78 12 p. (Lecture Notes in Computer Science; vol. 5780).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  103. Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana

    Davis, A. M., Hall, A., Millar, A. J., Darrah, C. & Davis, S. J., 27 Feb 2009, In: Plant Methods. 5, 7 p., 3.

    Research output: Contribution to journalArticlepeer-review

  104. A comparison of tobacco and poplar diurnal gene expression with the model plant Arabidopsis thaliana

    Edwards, K. D., Millar, A. J., Allen, F. & Eriksson, M. E., Jun 2009, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 153A, 2, p. S199-S199 1 p.

    Research output: Contribution to journalMeeting abstractpeer-review

  105. PlaSMo: Making existing plant and crop mathematical models available to plant systems biologists

    Davey, C., Ougham, H., Millar, A., Thomas, H., Tindal, C. & Muetzelfeldt, R., Jun 2009, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 153A, 2, p. S225-S226 2 p.

    Research output: Contribution to journalArticle

  106. A switchable light-input, light-output system modelled and constructed in yeast

    Sorokina, O., Kapus, A., Terecskei, K., Dixon, L. E., Kozma-Bognar, L., Nagy, F. & Millar, A. J., Sep 2009, In: Journal of Biological Engineering. 3, 15, 16 p., 15.

    Research output: Contribution to journalArticlepeer-review

  107. Development of a web portal for plant models

    Muetzelfeldt, R., Ougham, H., Millar, A., Davey, C. & Tindal, C., Dec 2009, In: Journal of Agricultural Science. 147, 6, p. 736

    Research output: Contribution to journalMeeting abstract

  108. Weather and seasons together demand complex biological clocks

    Troein, C., Locke, J. C. W., Turner, M. S. & Millar, A. J., Dec 2009, In: Current biology : CB. 19, 22, p. 1961-4 4 p.

    Research output: Contribution to journalArticlepeer-review

  109. Prediction of photoperiodic regulators from quantitative gene circuit models

    Salazar, J. D., Saithong, T., Brown, P. E., Foreman, J., Locke, J. C. W., Halliday, K. J., Carré, I. A., Rand, D. A. & Millar, A. J., 11 Dec 2009, In: Cell. 139, 6, p. 1170-1179 10 p.

    Research output: Contribution to journalArticlepeer-review

  110. 2010
  111. BRASS version 3: Biological Rhythm Analysis Software Suite

    Millar, A., Brown, P. E. & Rand, D. A., 2010

    Research output: Non-textual formSoftware

  112. Robustness from flexibility in the fungal circadian clock

    Akman, O. E., Rand, D. A., Brown, P. E. & Millar, A. J., 2010, In: BMC Systems Biology. 4, 88

    Research output: Contribution to journalArticlepeer-review

  113. Plant Systems Modelling portal, PlaSMo

    Tindal, C., Muetzelfeldt, R., Ougham, H. J. & Millar, A. (ed.), Jan 2010

    Research output: Non-textual formWeb publication/site

  114. An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community

    Bastow, R., Beynon, J., Estelle, M., Friesner, J., Grotewold, E., Lavagi, I., Lindsey, K., Meyers, B., Provart, N., Benfey, P., Birney, E., Braun, P., Brendel, V., Buell, R., Caccamo, M., Carrington, J., Cherry, M., Ecker, J., Eppig, J., Forster, M. & 31 others, Gutierrez, R., Hilson, P., Huala, E., Katari, M., Kersey, P., Kudla, J., Ma, H., Matsui, M., Matthews, K., May, S., Mayer, K., Millar, A., Millar, H., Mjolsness, E., Mockler, T., Nikolau, B., Nordborg, M., Rawlings, C., Schofield, P., Schoof, H., Schroeder, J. I., Sen, T. Z., Stanzione, D., Town, C., Toyoda, T., Vision, T., Walsh, S., Wang, X., Ware, D., Weckwerth, W. & Int Arabidopsis Informatics Cons, Aug 2010, In: The Plant Cell. 22, 8, p. 2530-2536 7 p.

    Research output: Contribution to journalEditorialpeer-review

  115. Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model

    Pokhilko, A., Hodge, S. K., Stratford, K., Knox, K., Edwards, K. D., Thomson, A. W., Mizuno, T. & Millar, A. J., 21 Sep 2010, In: Molecular Systems Biology. 6, 10 p., 416.

    Research output: Contribution to journalArticlepeer-review

  116. The contributions of interlocking loops and extensive nonlinearity to the properties of circadian clock models

    Saithong, T., Painter, K. J. & Millar, A. J., Nov 2010, In: PLoS ONE. 5, 11, 11 p., e13867.

    Research output: Contribution to journalArticlepeer-review

  117. Quantitative analysis of regulatory flexibility under changing environmental conditions

    Edwards, K. D., Akman, O. E., Knox, K., Lumsden, P. J., Thomson, A. W., Brown, P. E., Pokhilko, A., Kozma-Bognar, L., Nagy, F., Rand, D. A. & Millar, A. J., 2 Nov 2010, In: Molecular Systems Biology. 6, 11 p., 424.

    Research output: Contribution to journalArticlepeer-review

  118. Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models

    Saithong, T., Painter, K. J. & Millar, A. J., Dec 2010, In: PLoS ONE. 5, 12, 11 p., e15589.

    Research output: Contribution to journalArticlepeer-review

  119. 2011
  120. An International Model for the Future of Plant Science

    Millar, A., 2011, BBSRC and NSF.

    Research output: Book/ReportCommissioned report

  121. Circadian rhythms persist without transcription in a eukaryote

    O'Neill, J. S., van Ooijen, G., Dixon, L. E., Troein, C., Corellou, F., Bouget, F-Y., Reddy, A. B. & Millar, A. J., 2011, In: Nature. 469, 7331, p. 554-8 5 p.

    Research output: Contribution to journalArticlepeer-review

  122. Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

    Ashelford, K., Eriksson, M. E., Allen, C. M., D'Amore, R., Johansson, M., Gould, P., Kay, S., Millar, A. J., Hall, N. & Hall, A., 2011, In: Genome Biology. 12, 3, p. R28

    Research output: Contribution to journalArticlepeer-review

  123. Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus

    Sorokina, O., Corellou, F., Dauvillée, D., Sorokin, A., Goryanin, I., Ball, S., Bouget, F-Y. & Millar, A. J., 2011, In: BMC Systems Biology. 5, 36, 16 p.

    Research output: Contribution to journalArticlepeer-review

  124. Multiple light inputs to a simple clock circuit allow complex biological rhythms

    Troein, C., Corellou, F., Dixon, L. E., van Ooijen, G., O'Neill, J. S., Bouget, F-Y. & Millar, A. J., 2011, In: The Plant Journal. 66, 2, p. 375-85 11 p.

    Research output: Contribution to journalArticlepeer-review

  125. Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock

    Johansson, M., McWatters, H. G., Bakó, L., Takata, N., Gyula, P., Hall, A., Somers, D. E., Millar, A. J. & Eriksson, M. E., 2011, In: Plant physiology. 155, 4, p. 2108-22 15 p.

    Research output: Contribution to journalArticlepeer-review

  126. Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri

    Le Bihan, T., Martin, S. F., Chirnside, E. S., van Ooijen, G., Barrios-Llerena, M. E., O'Neill, J. S., Shliaha, P. V., Kerr, L. E. & Millar, A. J., 2011, In: Journal of proteomics. 74, 10, p. 2060-2070 11 p.

    Research output: Contribution to journalArticlepeer-review

  127. Stochastic properties of the plant circadian clock

    Guerriero, M. L., Pokhilko, A., Fernández, A. P., Halliday, K. J., Millar, A. J. & Hillston, J., 2011, In: Journal of the Royal Society Interface.

    Research output: Contribution to journalArticlepeer-review

  128. Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis

    Dixon, L. E., Knox, K., Kozma-Bognar, L., Southern, M. M., Pokhilko, A. & Millar, A. J., 2011, In: Current Biology. 21, 2, p. 120-5 6 p.

    Research output: Contribution to journalArticlepeer-review

  129. The Biodare Data Repository

    Zielinski, T., Moore, A., Troup, E., Beaton, M., Adams, R., Halliday, K. & Millar, A., 2011

    Research output: Other contribution

  130. Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis

    Pokhilko, A., Ramos, J. A., Holtan, H., Maszle, D. R., Khanna, R. & Millar, A. J., Feb 2011, In: Journal of Theoretical Biology. 270, 1, p. 31-41 11 p.

    Research output: Contribution to journalArticlepeer-review

  131. Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance

    O'Neill, J. S., van Ooijen, G., Le Bihan, T. & Millar, A. J., Apr 2011, In: Journal of biological rhythms. 26, 2, p. 91-98 8 p.

    Research output: Contribution to journalArticlepeer-review

  132. Proteasome Function Is Required for Biological Timing throughout the Twenty-Four Hour Cycle

    van Ooijen, G., Dixon, L. E., Troein, C. & Millar, A. J., May 2011, In: Current Biology. 21, 10, p. 869-875 7 p.

    Research output: Contribution to journalArticlepeer-review

  133. Light inputs shape the Arabidopsis circadian system

    Wenden, B., Kozma-Bognár, L., Edwards, K. D., Hall, A. J. W., Locke, J. C. W. & Millar, A. J., 31 May 2011, In: The Plant Journal. 66, 3, p. 480-491 12 p.

    Research output: Contribution to journalArticlepeer-review

  134. A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis

    Kolmos, E., Herrero, E., Bujdoso, N., Millar, A. J., Tóth, R., Gyula, P., Nagy, F. & Davis, S. J., Sep 2011, In: The Plant Cell. 23, 9, p. 3230-3246 17 p.

    Research output: Contribution to journalArticlepeer-review

  135. One hundred important questions facing plant science research

    Grierson, C. S., Barnes, S. R., Chase, M. W., Clarke, M., Grierson, D., Edwards, K. J., Jellis, G. J., Jones, J. D., Knapp, S., Oldroyd, G., Poppy, G., Temple, P., Williams, R., Bastow, R. & Millar, A., 31 Oct 2011, In: New Phytologist. 192, 1, p. 6-12 7 p.

    Research output: Contribution to journalLetterpeer-review

  136. 2012
  137. Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In: Nature. 485, 7399, p. 459–464

    Research output: Contribution to journalArticle

  138. FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering

    Song, Y. H., Smith, R. W., To, B. J., Millar, A. J. & Imaizumi, T., 2012, In: Science. 336, 6084, p. 1045-1049 5 p.

    Research output: Contribution to journalArticlepeer-review

  139. Genomic Transformation of the Picoeukaryote Ostreococcus tauri

    van Ooijen, G., Knox, K., Kis, K., Bouget, F-Y. & Millar, A. J., 2012, In: Journal of Visualized Experiments (JoVE). 65, e4074.

    Research output: Contribution to journalArticlepeer-review

  140. Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In: Nature. 485, 7399, p. 459-464 6 p.

    Research output: Contribution to journalArticlepeer-review

  141. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

    Pokhilko, A., Fernández, A. P., Edwards, K. D., Southern, M. M., Halliday, K. J. & Millar, A. J., 2012, In: Molecular Systems Biology. 8, 574.

    Research output: Contribution to journalArticlepeer-review

  142. tbd (in Japanese)

    Millar, A., 2012, In: Saibou Kougaku (Cell Technology). 30, 12

    Research output: Contribution to journalLiterature review

  143. Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

    Wenden, B., Toner, D. L. K., Hodge, S. K., Grima, R. & Millar, A. J., Apr 2012, In: Proceedings of the National Academy of Sciences (PNAS). 109, 17, p. 6757-6762

    Research output: Contribution to journalArticlepeer-review

  144. Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

    Huang, W., Pérez-García, P., Pokhilko, A., Millar, A. J., Antoshechkin, I., Riechmann, J. L. & Mas, P., 6 Apr 2012, In: Science. 336, 6077, p. 75-79 5 p.

    Research output: Contribution to journalArticlepeer-review

  145. The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models

    Adams, R. R., Tsorman, N., Stratford, K., Akman, O. E., Gilmore, S., Juty, N., Le Novère, N. & Millar, A. J., Aug 2012, In: Journal of biological rhythms. 27, 4, p. 328-332 6 p.

    Research output: Contribution to journalArticlepeer-review

  146. Digital clocks: simple Boolean models can quantitatively describe circadian systems

    Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. & Ghazal, P., 7 Sep 2012, In: Journal of the Royal Society Interface. 9, 74, p. 2365-2382 18 p.

    Research output: Contribution to journalArticlepeer-review

  147. Non-transcriptional oscillators in circadian timekeeping

    van Ooijen, G. & Millar, A. J., 1 Nov 2012, In: Trends in biochemical sciences. 37, 11, p. 484-492 9 p.

    Research output: Contribution to journalArticlepeer-review

  148. Erratum: Digital clocks: Simple Boolean models can quantitatively describe circadian systems (Journal of the Royal Society Interface (2012) 9 (3573) DOI: 10.1098/rsif.2012.0673)

    Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. & Ghazal, P., 7 Dec 2012, In: Journal of the Royal Society Interface. 9, 77, p. 3578 1 p.

    Research output: Contribution to journalArticlepeer-review

  149. 2013
  150. Functional analysis of Casein Kinase 1 in a minimal circadian system

    van Ooijen, G., Hindle, M., Martin, S. F., Barrios-Llerena, M., Sanchez, F., Bouget, F-Y., O'Neill, J. S., Le Bihan, T. & Millar, A. J., 2013, In: PLoS ONE. 8, 7, e70021.

    Research output: Contribution to journalArticlepeer-review

  151. Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics

    Ocone, A., Millar, A. J. & Sanguinetti, G., 2013, In: Bioinformatics. 29, 7, p. 910-916 7 p.

    Research output: Contribution to journalArticlepeer-review

  152. Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

    Pokhilko, A., Mas, P. & Millar, A. J., 2013, In: BMC Systems Biology. 7, 1, 12 p., 23.

    Research output: Contribution to journalArticlepeer-review

  153. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

    Gould, P. D., Ugarte, N., Domijan, M., Costa, M., Foreman, J., Macgregor, D., Rose, K., Griffiths, J., Millar, A. J., Finkenstädt, B., Penfield, S., Rand, D. A., Halliday, K. J. & Hall, A. J. W., 2013, In: Molecular Systems Biology. 9, 650.

    Research output: Contribution to journalArticlepeer-review

  154. Temperature-sensitive version of P2010 Arabidopsis clock model by Mirela Domijan, from Gould et al. 2013.

    Domijan, M., Halliday, K., Hall, A. J. W., Millar, A. & Rand, D. A., 2013

    Research output: Other contribution

  155. Variation in plastic responses of a globally distributed picoplankton species to ocean acidification

    Schaum, E., Rost, B., Millar, A. J. & Collins, S., 2013, In: Nature Climate Change. 3, p. 298–302

    Research output: Contribution to journalArticlepeer-review

  156. SBSI: An extensible distributed software infrastructure for parameter estimation in systems biology

    Adams, R., Clark, A., Lebedeva, G., Millar, A. J., Gilmore, S., Yamaguchi, A., Goryanin, I., Hanlon, N., Tsorman, N., Ali, S., Goltsov, A., Sorokin, A., Akman, O. E. & Troein, C., 1 Mar 2013, In: Bioinformatics. 29, 5, p. 664-665 2 p.

    Research output: Contribution to journalArticlepeer-review

  157. Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga

    van Ooijen, G., Martin, S. F., Barrios-Llerena, M. E., Hindle, M., Le Bihan, T., O'Neill, J. S. & Millar, A. J., 15 Oct 2013, In: BMC Cell Biology. 14, 1, 46.

    Research output: Contribution to journalArticlepeer-review

  158. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

    Keily, J., MacGregor, D. R., Smith, R. W., Millar, A. J., Halliday, K. J. & Penfield, S., 31 Oct 2013, In: The Plant Journal. 76, 2, p. 247-57 11 p.

    Research output: Contribution to journalArticlepeer-review

  159. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 Is Required for Circadian Periodicity through the Promotion of Nucleo-Cytoplasmic mRNA Export in Arabidopsis

    Macgregor, D. R., Gould, P., Foreman, J., Griffiths, J., Bird, S., Page, R., Stewart, K., Steel, G., Young, J., Paszkiewicz, K., Millar, A. J., Halliday, K. J., Hall, A. J. & Penfield, S., 19 Nov 2013, In: The Plant Cell. 14 p.

    Research output: Contribution to journalArticlepeer-review

  160. 2014
  161. Mathematical model of arabidopsis vegetative growth: The framework model

    Chew, Y. H. & Millar, A., 2014

    Research output: Other contribution

  162. Regulatory principles and experimental approaches to the circadian control of starch turnover

    Seaton, D. D., Ebenhöh, O., Millar, A. J. & Pokhilko, A., 2014, In: Journal of the Royal Society Interface. 11, 91, 20130979.

    Research output: Contribution to journalArticlepeer-review

  163. Strengths and limitations of period estimation methods for circadian data

    Zielinski, T., Moore, A. M., Troup, E., Halliday, K. J. & Millar, A. J., 2014, In: PLoS ONE. 9, 5, e96462.

    Research output: Contribution to journalArticlepeer-review

  164. Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure

    Moore, A., Zielinski, T. & Millar, A., 8 Apr 2014, Plant Circadian Networks: Methods and Protocols. Staiger, D. (ed.). Springer New York, Vol. 1158. p. 13-44 32 p. (Methods in Molecular Biology; vol. 1158).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  165. Light and circadian regulation of clock components aids flexible responses to environmental signals

    Dixon, L. E., Hodge, S. K., van Ooijen, G., Troein, C., Akman, O. E. & Millar, A. J., 20 May 2014, In: New Phytologist.

    Research output: Contribution to journalArticlepeer-review

  166. The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species

    Hindle, M. M., Martin, S. F., Noordally, Z. B., Van Ooijen, G., Barrios-llerena, M. E., Simpson, T. I., Le Bihan, T. & Millar, A. J., 1 Aug 2014, In: BMC Genomics. 15, 1, 640.

    Research output: Contribution to journalArticlepeer-review

  167. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

    Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., De Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J. & Millar, A. J., 30 Sep 2014, In: Proceedings of the National Academy of Sciences (PNAS). 111, 39, p. E4127-E4136 10 p.

    Research output: Contribution to journalArticlepeer-review

  168. Clocks in Algae

    Noordally, Z. B. & Millar, A., 7 Nov 2014, In: Biochemistry. 54, 2, p. 171–183

    Research output: Contribution to journalLiterature reviewpeer-review

  169. 2015
  170. Bridging the Gap between Omics and Earth System Science to better understand how Environmental Change impacts Marine Microbes

    Mock, T., Daines, S. J., Geider, R., Collins, S., Metodiev, M., Millar, A. J., Moulton, V. & Lenton, T. M., 2015, In: Global Change Biology. 22, 1, p. 61–75

    Research output: Contribution to journalLiterature reviewpeer-review

  171. Experimental design for inference over the A. thaliana circadian clock network

    Trejo-Banos, D., Millar, A. J. & Sanguinetti, G., 2015, Computational Methods in Systems Biology: 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, Proceedings. Springer International Publishing, p. 28-39 12 p. (Lecture Notes in Computer Science; vol. 9308).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  172. Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri

    Bihan, T. L., Hindle, M., Martin, S. F., Barrios-Llerena, M. E., Krahmer, J., Kis, K., Millar, A. J. & van Ooijen, G., 2015, In: Proteomics. 15, 23-24, p. 4135–4144

    Research output: Contribution to journalArticlepeer-review

  173. Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana

    Krahmer, J., Hindle, M. M., Martin, S. F., Le Bihan, T. & Millar, A. J., 2015, Methods in Enzymology: Membrane Proteins—Engineering, Purification and Crystallization. Elsevier, Vol. 551. p. 405-31 27 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  174. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

    Seaton, D. D., Smith, R. W., Song, Y. H., MacGregor, D. R., Stewart, K., Steel, G., Foreman, J., Penfield, S., Imaizumi, T., Millar, A. J. & Halliday, K. J., 19 Jan 2015, In: Molecular Systems Biology. 11, 1, 19 p., 776.

    Research output: Contribution to journalArticlepeer-review

  175. Correction: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

    Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., De Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J. & Millar, A. J., 12 May 2015, In: Proceedings of the National Academy of Sciences (PNAS). 112, 19, E2556.

    Research output: Contribution to journalArticlepeer-review

  176. A Bayesian approach for structure learning in oscillating regulatory networks

    Trejo-Banos, D., Millar, A. & Sanguinetti, G., 14 Jul 2015, In: Bioinformatics. 31, 22, p. 3617-3624 8 p.

    Research output: Contribution to journalArticlepeer-review

  177. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

    Flis, A., Fernández, A. P., Zielinski, T., Mengin, V., Sulpice, R., Stratford, K., Hume, A., Pokhilko, A., Southern, M. M., Seaton, D. D., McWatters, H. G., Stitt, M., Halliday, K. J. & Millar, A. J., 14 Oct 2015, In: Open Biology. 5, 10, 150042.

    Research output: Contribution to journalArticlepeer-review

  178. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

    Troup, E., Clark, I., Swain, P., Millar, A. & Zielinski, T., 30 Oct 2015, University of Edinburgh. 22 p.

    Research output: Book/ReportOther report

  179. Low-temperature-specific effects of PHYTOCHROME C on the circadian clock in Arabidopsis suggest that PHYC underlies natural variation in biological timing

    Edwards, K. D., Guerineau, F., Devlin, P. & Millar, A., Nov 2015, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  180. Plants in silico: Why, why now and what? --- An integrative platform for plant systems biology research

    Zhu, X-G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., 2 Nov 2015, In: Plant, Cell and Environment. 39 , 5, p. 1049–1057

    Research output: Contribution to journalLiterature reviewpeer-review

  181. Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana

    Millar, A., Carrington, J. T., Tee, W. V. & Hodge, S., 17 Dec 2015, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  182. 2016
  183. Multi-scale modelling to synergise plant systems biology and crop science

    Chew, Y. H., Seaton, D. & Millar, A., 26 Feb 2016, In: Field crops research. 202

    Research output: Contribution to journalLiterature reviewpeer-review

  184. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report

    Troup, E., Tomlinson, K., D'Mellow, K., Richards, O., Millar, A. & Zielinski, T., 11 Mar 2016, University of Edinburgh. 13 p.

    Research output: Book/ReportOther report

  185. The intracellular dynamics of circadian clocks reach for the light of ecology and evolution

    Millar, A., Apr 2016, In: Annual Review of Plant Biology. 67, p. 595-618

    Research output: Contribution to journalLiterature reviewpeer-review

  186. qpMerge: Merging different peptide isoforms using a motif centric strategy

    Hindle, M. M., Le Bihan, T., Krahmer, J., Martin, S. F., Noordally, Z. B., Simpson, T. I. & Millar, A. J., 5 Apr 2016, (Submitted) bioRxiv, at Cold Spring Harbor Laboratory, 9 p.

    Research output: Working paper

  187. Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis

    Flis, A., Sulpice, R., Seaton, D. D., Ivakov, A. A., Liput, M., Abel, C., Millar, A. J. & Stitt, M., 4 Aug 2016, In: Plant, Cell and Environment. 39, 9, p. 1955-1981

    Research output: Contribution to journalArticlepeer-review

  188. Chromar, a rule-based language of parameterised objects

    Honorato Zimmer, R., Millar, A., Plotkin, G. & Zardilis, A., 7 Sep 2016, The Seventh International Workshop on Static Analysis and Systems Biology (SASB 2016). 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  189. Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks

    Bordage, S., Sullivan, S., Laird, J., Millar, A. J. & Nimmo, H. G., 1 Oct 2016, In: New Phytologist. 212, 1, p. 136–149 14 p.

    Research output: Contribution to journalArticlepeer-review

  190. 2017
  191. Valuing the project: A knowledge-action response to network governance in collaborative research

    Freeman, P. & Millar, A., Jan 2017, In: Public Money & Management. 37, 1, p. 23-30

    Research output: Contribution to journalArticlepeer-review

  192. Linking circadian time to growth rate quantitatively via carbon metabolism

    Chew, Y. H., Seaton, D., Mengin, V., Flis, A., Mugford, S. T., Smith, A. M., Stitt, M. & Millar, A., 6 Feb 2017, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  193. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

    Marshall-colon, A., Long, S. P., Allen, D. K., Allen, G., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X., 15 May 2017, In: Frontiers in plant science. 8, 786.

    Research output: Contribution to journalArticlepeer-review

  194. BioDare2, online data analysis resource

    Zielinski, T. & Millar, A., Jun 2017

    Research output: Non-textual formSoftware

  195. Chromar, a language of parameterised objects

    Honorato Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 8 Aug 2017, In: Theoretical Computer Science. 25 p.

    Research output: Contribution to journalArticlepeer-review

  196. Time-resolved Interaction Proteomics of the Putative Scaffold Protein GIGANTEA in Arabidopsis thaliana

    Krahmer, J., Goralogia, G., Kubota, A., Johnson, R. S., Song, Y. H., Halliday, K., MacCoss, M. J., LeBihan, T., Imaizumi, T. & Millar, A., 28 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 58 p.

    Research output: Working paper

  197. Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

    Seaton, D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. & Gruissem, W., 29 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 43 p.

    Research output: Working paper

  198. Guidelines for Genome-Scale Analysis of Biological Rhythms

    Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M. F., Chen, Z., Chiu, J. C., Cox, J., Crowell, A. M., DeBruyne, J. P., Dijk, D-J., DiTacchio, L., Doyle, F. J. & 73 others, Duffield, G. E., Dunlap, J. C., Eckel-Mahan, K., Esser, K. A., FitzGerald, G. A., Forger, D. B., Francey, L. J., Fu, Y-H., Gachon, F., Gatfield, D., de Goede, P., Golden, S. S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M. H., Herzel, H., Herzog, E. D., Hoffmann, C., Hong, C., Hughey, J. J., Hurley, J. M., de la Iglesia, H. O., Johnson, C., Kay, S. A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S. A., Li, J., Li, X., Liu, A. C., Loros, J. J., Martino, T. A., Menet, J. S., Merrow, M., Millar, A. J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M. N., Olmedo, M., Nusinow, D. A., Ptáček, L. J., Rand, D., Reddy, A. B., Robles, M. S., Roenneberg, T., Rosbash, M., Ruben, M. D., Rund, S. S. C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D. J., Storch, K-F., Takahashi, J. S., Ueda, H. R., Wang, H., Weitz, C., Westermark, P. O., Wijnen, H., Xu, Y., Wu, G., Yoo, S-H., Young, M., Zhang, E. E., Zielinski, T. & Hogenesch, J. B., 1 Oct 2017, In: Journal of biological rhythms. 32, 5, p. 380-393 14 p., 748730417728663.

    Research output: Contribution to journalArticlepeer-review

  199. 2018
  200. Optimisation of plant traits using optimal control of environmental variables

    Zardilis, A., Menolascina, F. & Millar, A., 2018, (Unpublished) Proceedings of the European Control Conference 2019.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  201. Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

    Seaton, D. D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. J. & Gruissem, W., 1 Mar 2018, In: Molecular Systems Biology. 14, 3, p. e7962 19 p.

    Research output: Contribution to journalArticlepeer-review

  202. Chromar, a Rule-based Language of Parameterised Objects

    Honorato-Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 10 Apr 2018, In: Electronic Notes in Theoretical Computer Science. 335, p. 49-66 18 p.

    Research output: Contribution to journalArticlepeer-review

  203. Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees

    Edwards, K. D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., Kozarewa, I., Strnad, M., Millar, A. J., Ljung, K. & Eriksson, M. E., 15 Apr 2018, In: Plant, Cell and Environment. 15 p.

    Research output: Contribution to journalArticlepeer-review

  204. A multi-model Framework for the Arabidopsis life cycle

    Zardilis, A., Hume, A. & Millar, A., 29 Jun 2018, Cold Spring Harbor: bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  205. Molecular basis of flowering under natural long-day conditions in Arabidopsis

    Song, Y. H., Kubota, A., Kwon, M. S., Covington, M. F., Lee, N., Taagen, E. R., Laboy Cintrón, D., Hwang, D. Y., Akiyama, R., Hodge, S. K., Huang, H., Nguyen, N. H., Nusinow, D. A., Millar, A. J., Shimizu, K. K. & Imaizumi, T., 1 Oct 2018, In: Nature Plants. 4, 10, p. 824-835 12 p.

    Research output: Contribution to journalArticlepeer-review

  206. 2019
  207. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis

    Krahmer, J., Goralogia, G. S., Kubota, A., Zardilis, A., Johnson, R. S., Song, Y. H., MacCoss, M. J., LeBihan, T., Halliday, K. J., Imaizumi, T. & Millar, A. J., Feb 2019, In: FEBS Letters. 593, 3, 20 p.

    Research output: Contribution to journalArticlepeer-review

  208. Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves

    Flis, A., Mengin, V., Ivakov, A. A., Mugford, S. T., Hubberten, H-M., Encke, B., Krohn, N., Höhne, M., Feil, R., Hoefgen, R., Lunn, J. E., Millar, A. J., Smith, A. M., Sulpice, R. & Stitt, M., 1 Feb 2019, In: Plant, Cell and Environment. 42, 2, p. 549-573 25 p.

    Research output: Contribution to journalArticlepeer-review

  209. A multi-model Framework for the Arabidopsis life cycle

    Zardilis, A., Hume, A. & Millar, A., 19 Feb 2019, In: Journal of Experimental Botany. 70, 9, p. 2463–2477 16 p.

    Research output: Contribution to journalArticlepeer-review

  210. Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

    Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In: Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.

    Research output: Contribution to journalReview articlepeer-review

  211. An explanatory model of temperature influence on flowering through whole-plant accumulation of FT in Arabidopsis thaliana  

    Kinmonth-Schultz, H. A., MacEwen, M. J. S., Seaton, D. D., Millar, A. J., Imaizumi, T. & Kim, S-H., 15 May 2019, In: In Silico Plants. 1, 1, diz006.

    Research output: Contribution to journalArticlepeer-review

  212. Better research by efficient sharing: Evaluation of free management platforms for synthetic biology designs

    Urquiza-garcía, U., Zieliński, T. & Millar, A. J., 20 Jun 2019, In: Synthetic Biology. 4, 1, ysz016.

    Research output: Contribution to journalArticlepeer-review

  213. The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation [version 1; peer review: 2 approved].

    Zielinski, T., Hay, J. & Millar, A. J., 2 Jul 2019, In: Wellcome Open Research . 4, 104.

    Research output: Contribution to journalArticlepeer-review

  214. Expanding the bioluminescent reporter toolkit for plant science with NanoLUC

    Urquiza-garcía, U. & Millar, A. J., 8 Jul 2019, In: Plant Methods. 15, 1, 68.

    Research output: Contribution to journalArticlepeer-review

  215. Circadian protein regulation in the green lineage II. The clock gene circuit controls a phospho-dawn in Arabidopsis thaliana

    Krahmer, J., Hindle, M., Perby, L. K., Nielsen, T. H., Van Ooijen, G., Halliday, K. J., Bihan, T. L. & Millar, A. J., 8 Sep 2019, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  216. 2020
  217. PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO

    Hay, J., Troup, E., Clark, I., Pietsch, J., Zielinski, T. & Millar, A. J., 18 May 2020, In: Wellcome Open Research .

    Research output: Contribution to journalArticlepeer-review