Edinburgh Research Explorer

Prof Andrew Millar

Chair of Systems Biology

  1. 2019
  2. Circadian protein regulation in the green lineage II. The clock gene circuit controls a phospho-dawn in Arabidopsis thaliana

    Krahmer, J., Hindle, M., Perby, L. K., Nielsen, T. H., Van Ooijen, G., Halliday, K. J., Bihan, T. L. & Millar, A. J., 8 Sep 2019, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  3. Expanding the bioluminescent reporter toolkit for plant science with NanoLUC

    Urquiza-garcía, U. & Millar, A. J., 8 Jul 2019, In : Plant Methods. 15, 1, 68.

    Research output: Contribution to journalArticle

  4. Better research by efficient sharing: Evaluation of free management platforms for synthetic biology designs

    Urquiza-garcía, U., Zieliński, T. & Millar, A. J., 20 Jun 2019, In : Synthetic Biology. 4, 1, ysz016.

    Research output: Contribution to journalArticle

  5. An explanatory model of temperature influence on flowering through whole-plant accumulation of FT in Arabidopsis thaliana  

    Kinmonth-Schultz, H. A., MacEwen, M. J. S., Seaton, D. D., Millar, A. J., Imaizumi, T. & Kim, S-H., 15 May 2019, In : In Silico Plants. 1, 1, diz006.

    Research output: Contribution to journalArticle

  6. Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

    Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In : Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.

    Research output: Contribution to journalReview article

  7. A multi-model Framework for the Arabidopsis life cycle

    Zardilis, A., Hume, A. & Millar, A., 19 Feb 2019, In : Journal of Experimental Botany. 70, 9, p. 2463–2477 16 p.

    Research output: Contribution to journalArticle

  8. Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves

    Flis, A., Mengin, V., Ivakov, A. A., Mugford, S. T., Hubberten, H-M., Encke, B., Krohn, N., Höhne, M., Feil, R., Hoefgen, R., Lunn, J. E., Millar, A. J., Smith, A. M., Sulpice, R. & Stitt, M., 1 Feb 2019, In : Plant, Cell and Environment. 42, 2, p. 549-573 25 p.

    Research output: Contribution to journalArticle

  9. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis

    Krahmer, J., Goralogia, G. S., Kubota, A., Zardilis, A., Johnson, R. S., Song, Y. H., MacCoss, M. J., LeBihan, T., Halliday, K. J., Imaizumi, T. & Millar, A. J., Feb 2019, In : FEBS Letters. 593, 3, 20 p.

    Research output: Contribution to journalArticle

  10. 2018
  11. Molecular basis of flowering under natural long-day conditions in Arabidopsis

    Song, Y. H., Kubota, A., Kwon, M. S., Covington, M. F., Lee, N., Taagen, E. R., Laboy Cintrón, D., Hwang, D. Y., Akiyama, R., Hodge, S. K., Huang, H., Nguyen, N. H., Nusinow, D. A., Millar, A. J., Shimizu, K. K. & Imaizumi, T., 1 Oct 2018, In : Nature Plants. 4, 10, p. 824-835 12 p.

    Research output: Contribution to journalArticle

  12. A multi-model Framework for the Arabidopsis life cycle

    Zardilis, A., Hume, A. & Millar, A., 29 Jun 2018, Cold Spring Harbor: bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  13. Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees

    Edwards, K. D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., Kozarewa, I., Strnad, M., Millar, A. J., Ljung, K. & Eriksson, M. E., 15 Apr 2018, In : Plant, Cell and Environment. 15 p.

    Research output: Contribution to journalArticle

  14. Chromar, a Rule-based Language of Parameterised Objects

    Honorato-Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 10 Apr 2018, In : Electronic Notes in Theoretical Computer Science. 335, p. 49-66 18 p.

    Research output: Contribution to journalArticle

  15. Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

    Seaton, D. D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. J. & Gruissem, W., 1 Mar 2018, In : Molecular Systems Biology. 14, 3, p. e7962 19 p.

    Research output: Contribution to journalArticle

  16. Optimisation of plant traits using optimal control of environmental variables

    Zardilis, A., Menolascina, F. & Millar, A., 2018, (Unpublished) Proceedings of the European Control Conference 2019.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  17. 2017
  18. Guidelines for Genome-Scale Analysis of Biological Rhythms

    Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M. F., Chen, Z., Chiu, J. C., Cox, J., Crowell, A. M., DeBruyne, J. P., Dijk, D-J., DiTacchio, L., Doyle, F. J. & 73 others, Duffield, G. E., Dunlap, J. C., Eckel-Mahan, K., Esser, K. A., FitzGerald, G. A., Forger, D. B., Francey, L. J., Fu, Y-H., Gachon, F., Gatfield, D., de Goede, P., Golden, S. S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M. H., Herzel, H., Herzog, E. D., Hoffmann, C., Hong, C., Hughey, J. J., Hurley, J. M., de la Iglesia, H. O., Johnson, C., Kay, S. A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S. A., Li, J., Li, X., Liu, A. C., Loros, J. J., Martino, T. A., Menet, J. S., Merrow, M., Millar, A. J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M. N., Olmedo, M., Nusinow, D. A., Ptáček, L. J., Rand, D., Reddy, A. B., Robles, M. S., Roenneberg, T., Rosbash, M., Ruben, M. D., Rund, S. S. C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D. J., Storch, K-F., Takahashi, J. S., Ueda, H. R., Wang, H., Weitz, C., Westermark, P. O., Wijnen, H., Xu, Y., Wu, G., Yoo, S-H., Young, M., Zhang, E. E., Zielinski, T. & Hogenesch, J. B., 1 Oct 2017, In : Journal of biological rhythms. 32, 5, p. 380-393 14 p., 748730417728663.

    Research output: Contribution to journalArticle

  19. Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

    Seaton, D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. & Gruissem, W., 29 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 43 p.

    Research output: Working paper

  20. Time-resolved Interaction Proteomics of the Putative Scaffold Protein GIGANTEA in Arabidopsis thaliana

    Krahmer, J., Goralogia, G., Kubota, A., Johnson, R. S., Song, Y. H., Halliday, K., MacCoss, M. J., LeBihan, T., Imaizumi, T. & Millar, A., 28 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 58 p.

    Research output: Working paper

  21. Chromar, a language of parameterised objects

    Honorato Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 8 Aug 2017, In : Theoretical Computer Science. 25 p.

    Research output: Contribution to journalArticle

  22. BioDare2, online data analysis resource

    Zielinski, T. & Millar, A., Jun 2017

    Research output: Non-textual formSoftware

  23. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

    Marshall-colon, A., Long, S. P., Allen, D. K., Allen, G., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X., 15 May 2017, In : Frontiers in plant science. 8, 786.

    Research output: Contribution to journalArticle

  24. Linking circadian time to growth rate quantitatively via carbon metabolism

    Chew, Y. H., Seaton, D., Mengin, V., Flis, A., Mugford, S. T., Smith, A. M., Stitt, M. & Millar, A., 6 Feb 2017, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  25. Valuing the project: A knowledge-action response to network governance in collaborative research

    Freeman, P. & Millar, A., Jan 2017, In : Public Money & Management. 37, 1, p. 23-30

    Research output: Contribution to journalArticle

  26. 2016
  27. Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks

    Bordage, S., Sullivan, S., Laird, J., Millar, A. J. & Nimmo, H. G., Oct 2016, In : New Phytologist. 212, 1, p. 136–149 14 p.

    Research output: Contribution to journalArticle

  28. Chromar, a rule-based language of parameterised objects

    Honorato Zimmer, R., Millar, A., Plotkin, G. & Zardilis, A., 7 Sep 2016, The Seventh International Workshop on Static Analysis and Systems Biology (SASB 2016). 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis

    Flis, A., Sulpice, R., Seaton, D. D., Ivakov, A. A., Liput, M., Abel, C., Millar, A. J. & Stitt, M., 4 Aug 2016, In : Plant, Cell and Environment. 39, 9, p. 1955-1981

    Research output: Contribution to journalArticle

  30. qpMerge: Merging different peptide isoforms using a motif centric strategy

    Hindle, M. M., Le Bihan, T., Krahmer, J., Martin, S. F., Noordally, Z. B., Simpson, T. I. & Millar, A. J., 5 Apr 2016, (Submitted) bioRxiv, at Cold Spring Harbor Laboratory, 9 p.

    Research output: Working paper

  31. The intracellular dynamics of circadian clocks reach for the light of ecology and evolution

    Millar, A., Apr 2016, In : Annual Review of Plant Biology. 67, p. 595-618

    Research output: Contribution to journalLiterature review

  32. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report

    Troup, E., Tomlinson, K., D'Mellow, K., Richards, O., Millar, A. & Zielinski, T., 11 Mar 2016, University of Edinburgh. 13 p.

    Research output: Book/ReportOther report

  33. Multi-scale modelling to synergise plant systems biology and crop science

    Chew, Y. H., Seaton, D. & Millar, A., 26 Feb 2016, In : Field crops research. 202

    Research output: Contribution to journalLiterature review

  34. 2015
  35. Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana

    Millar, A., Carrington, J. T., Tee, W. V. & Hodge, S., 17 Dec 2015, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  36. Plants in silico: Why, why now and what? --- An integrative platform for plant systems biology research

    Zhu, X-G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., 2 Nov 2015, In : Plant, Cell and Environment. 39 , 5, p. 1049–1057

    Research output: Contribution to journalLiterature review

  37. Low-temperature-specific effects of PHYTOCHROME C on the circadian clock in Arabidopsis suggest that PHYC underlies natural variation in biological timing

    Edwards, K. D., Guerineau, F., Devlin, P. & Millar, A., Nov 2015, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  38. Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

    Troup, E., Clark, I., Swain, P., Millar, A. & Zielinski, T., 30 Oct 2015, University of Edinburgh. 22 p.

    Research output: Book/ReportOther report

  39. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

    Flis, A., Fernández, A. P., Zielinski, T., Mengin, V., Sulpice, R., Stratford, K., Hume, A., Pokhilko, A., Southern, M. M., Seaton, D. D., McWatters, H. G., Stitt, M., Halliday, K. J. & Millar, A. J., 14 Oct 2015, In : Open Biology. 5, 10, 150042.

    Research output: Contribution to journalArticle

  40. A Bayesian approach for structure learning in oscillating regulatory networks

    Trejo-Banos, D., Millar, A. & Sanguinetti, G., 14 Jul 2015, In : Bioinformatics. 31, 22, p. 3617-3624 8 p.

    Research output: Contribution to journalArticle

  41. Correction: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

    Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., De Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J. & Millar, A. J., 12 May 2015, In : Proceedings of the National Academy of Sciences. 112, 19, E2556.

    Research output: Contribution to journalArticle

  42. Bridging the Gap between Omics and Earth System Science to better understand how Environmental Change impacts Marine Microbes

    Mock, T., Daines, S. J., Geider, R., Collins, S., Metodiev, M., Millar, A. J., Moulton, V. & Lenton, T. M., 2015, In : Global Change Biology. 22, 1, p. 61–75

    Research output: Contribution to journalLiterature review

  43. Experimental design for inference over the A. thaliana circadian clock network

    Trejo-Banos, D., Millar, A. J. & Sanguinetti, G., 2015, Computational Methods in Systems Biology: 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, Proceedings. Springer International Publishing, p. 28-39 12 p. (Lecture Notes in Computer Science; vol. 9308).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

    Seaton, D. D., Smith, R. W., Song, Y. H., MacGregor, D. R., Stewart, K., Steel, G., Foreman, J., Penfield, S., Imaizumi, T., Millar, A. J. & Halliday, K. J., 2015, In : Molecular Systems Biology. 11, 1, 776.

    Research output: Contribution to journalArticle

  45. Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana

    Krahmer, J., Hindle, M. M., Martin, S. F., Le Bihan, T. & Millar, A. J., 2015, Methods in Enzymology: Membrane Proteins—Engineering, Purification and Crystallization. Elsevier, Vol. 551. p. 405-31 27 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  46. 2014
  47. Clocks in Algae

    Noordally, Z. B. & Millar, A., 7 Nov 2014, In : Biochemistry. 54, 2, p. 171–183

    Research output: Contribution to journalLiterature review

  48. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

    Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., De Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J. & Millar, A. J., 30 Sep 2014, In : Proceedings of the National Academy of Sciences. 111, 39, p. E4127-E4136

    Research output: Contribution to journalArticle

  49. Light and circadian regulation of clock components aids flexible responses to environmental signals

    Dixon, L. E., Hodge, S. K., van Ooijen, G., Troein, C., Akman, O. E. & Millar, A. J., 20 May 2014, In : New Phytologist.

    Research output: Contribution to journalArticle

  50. Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure

    Moore, A., Zielinski, T. & Millar, A., 8 Apr 2014, Plant Circadian Networks: Methods and Protocols. Staiger, D. (ed.). Springer New York, Vol. 1158. p. 13-44 32 p. (Methods in Molecular Biology; vol. 1158).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  51. Mathematical model of Arabidopsis vegetative growth: the Framework Model

    Chew, Y. H. & Millar, A., 2014

    Research output: Other contribution

  52. Regulatory principles and experimental approaches to the circadian control of starch turnover

    Seaton, D. D., Ebenhöh, O., Millar, A. J. & Pokhilko, A., 2014, In : Journal of the Royal Society Interface. 11, 91, 20130979.

    Research output: Contribution to journalArticle

  53. Strengths and limitations of period estimation methods for circadian data

    Zielinski, T., Moore, A. M., Troup, E., Halliday, K. J. & Millar, A. J., 2014, In : PLoS ONE. 9, 5, e96462.

    Research output: Contribution to journalArticle

  54. 2013
  55. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 Is Required for Circadian Periodicity through the Promotion of Nucleo-Cytoplasmic mRNA Export in Arabidopsis

    Macgregor, D. R., Gould, P., Foreman, J., Griffiths, J., Bird, S., Page, R., Stewart, K., Steel, G., Young, J., Paszkiewicz, K., Millar, A. J., Halliday, K. J., Hall, A. J. & Penfield, S., 19 Nov 2013, In : The Plant Cell. 14 p.

    Research output: Contribution to journalArticle

  56. Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga

    van Ooijen, G., Martin, S. F., Barrios-Llerena, M. E., Hindle, M., Le Bihan, T., O'Neill, J. S. & Millar, A. J., 15 Oct 2013, In : BMC Cell Biology. 14, 1, 46.

    Research output: Contribution to journalArticle

  57. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

    Keily, J., MacGregor, D. R., Smith, R. W., Millar, A. J., Halliday, K. J. & Penfield, S., Oct 2013, In : The Plant Journal. 76, 2, p. 247-57 11 p.

    Research output: Contribution to journalArticle

  58. SBSI: An extensible distributed software infrastructure for parameter estimation in systems biology

    Adams, R., Clark, A., Lebedeva, G., Millar, A. J., Gilmore, S., Yamaguchi, A., Goryanin, I., Hanlon, N., Tsorman, N., Ali, S., Goltsov, A., Sorokin, A., Akman, O. E. & Troein, C., 1 Mar 2013, In : Bioinformatics. 29, 5, p. 664-665 2 p.

    Research output: Contribution to journalArticle

  59. Functional analysis of Casein Kinase 1 in a minimal circadian system

    van Ooijen, G., Hindle, M., Martin, S. F., Barrios-Llerena, M., Sanchez, F., Bouget, F-Y., O'Neill, J. S., Le Bihan, T. & Millar, A. J., 2013, In : PLoS ONE. 8, 7, e70021.

    Research output: Contribution to journalArticle

  60. Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics

    Ocone, A., Millar, A. J. & Sanguinetti, G., 2013, In : Bioinformatics. 29, 7, p. 910-916 7 p.

    Research output: Contribution to journalArticle

  61. Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

    Pokhilko, A., Mas, P. & Millar, A. J., 2013, In : BMC Systems Biology. 7, 1, 12 p., 23.

    Research output: Contribution to journalArticle

  62. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

    Gould, P. D., Ugarte, N., Domijan, M., Costa, M., Foreman, J., Macgregor, D., Rose, K., Griffiths, J., Millar, A. J., Finkenstädt, B., Penfield, S., Rand, D. A., Halliday, K. J. & Hall, A. J. W., 2013, In : Molecular Systems Biology. 9, 650.

    Research output: Contribution to journalArticle

  63. Temperature-sensitive version of P2010 Arabidopsis clock model by Mirela Domijan, from Gould et al. 2013.

    Domijan, M., Halliday, K., Hall, A. J. W., Millar, A. & Rand, D. A., 2013

    Research output: Other contribution

  64. Variation in plastic responses of a globally distributed picoplankton species to ocean acidification

    Schaum, E., Rost, B., Millar, A. J. & Collins, S., 2013, In : Nature Climate Change. 3, p. 298–302

    Research output: Contribution to journalArticle

  65. 2012
  66. Digital clocks: simple Boolean models can quantitatively describe circadian systems

    Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. & Ghazal, P., 7 Sep 2012, In : Journal of the Royal Society Interface. 9, 74, p. 2365-2382 18 p.

    Research output: Contribution to journalArticle

  67. The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models

    Adams, R. R., Tsorman, N., Stratford, K., Akman, O. E., Gilmore, S., Juty, N., Le Novère, N. & Millar, A. J., Aug 2012, In : Journal of biological rhythms. 27, 4, p. 328-332 6 p.

    Research output: Contribution to journalArticle

  68. Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

    Huang, W., Pérez-García, P., Pokhilko, A., Millar, A. J., Antoshechkin, I., Riechmann, J. L. & Mas, P., 6 Apr 2012, In : Science. 336, 6077, p. 75-79

    Research output: Contribution to journalArticle

  69. Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

    Wenden, B., Toner, D. L. K., Hodge, S. K., Grima, R. & Millar, A. J., Apr 2012, In : Proceedings of the National Academy of Sciences. 109, 17, p. 6757-6762

    Research output: Contribution to journalArticle

  70. Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In : Nature. 485, 7399, p. 459–464

    Research output: Contribution to journalArticle

  71. FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering

    Song, Y. H., Smith, R. W., To, B. J., Millar, A. J. & Imaizumi, T., 2012, In : Science. 336, 6084, p. 1045-1049 5 p.

    Research output: Contribution to journalArticle

  72. Genomic Transformation of the Picoeukaryote Ostreococcus tauri

    van Ooijen, G., Knox, K., Kis, K., Bouget, F-Y. & Millar, A. J., 2012, In : Journal of Visualized Experiments (JoVE). 65, e4074.

    Research output: Contribution to journalArticle

  73. Non-transcriptional oscillators in circadian timekeeping

    van Ooijen, G. & Millar, A. J., 2012, In : Trends in biochemical sciences.

    Research output: Contribution to journalArticle

  74. Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In : Nature. 485, 7399, p. 459-464 6 p.

    Research output: Contribution to journalArticle

  75. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

    Pokhilko, A., Fernández, A. P., Edwards, K. D., Southern, M. M., Halliday, K. J. & Millar, A. J., 2012, In : Molecular Systems Biology. 8, 574.

    Research output: Contribution to journalArticle

  76. tbd (in Japanese)

    Millar, A., 2012, In : Saibou Kougaku (Cell Technology). 30, 12

    Research output: Contribution to journalLiterature review

  77. 2011
  78. A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis

    Kolmos, E., Herrero, E., Bujdoso, N., Millar, A. J., Tóth, R., Gyula, P., Nagy, F. & Davis, S. J., Sep 2011, In : The Plant Cell. 23, 9, p. 3230-3246 17 p.

    Research output: Contribution to journalArticle

  79. Proteasome Function Is Required for Biological Timing throughout the Twenty-Four Hour Cycle

    van Ooijen, G., Dixon, L. E., Troein, C. & Millar, A. J., May 2011, In : Current Biology. 21, 10, p. 869-875 7 p.

    Research output: Contribution to journalArticle

  80. Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance

    O'Neill, J. S., van Ooijen, G., Le Bihan, T. & Millar, A. J., Apr 2011, In : Journal of biological rhythms. 26, 2, p. 91-98 8 p.

    Research output: Contribution to journalArticle

  81. Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis

    Pokhilko, A., Ramos, J. A., Holtan, H., Maszle, D. R., Khanna, R. & Millar, A. J., Feb 2011, In : Journal of Theoretical Biology. 270, 1, p. 31-41 11 p.

    Research output: Contribution to journalArticle

  82. An International Model for the Future of Plant Science

    Millar, A., 2011, BBSRC and NSF.

    Research output: Book/ReportCommissioned report

  83. Circadian rhythms persist without transcription in a eukaryote

    O'Neill, J. S., van Ooijen, G., Dixon, L. E., Troein, C., Corellou, F., Bouget, F-Y., Reddy, A. B. & Millar, A. J., 2011, In : Nature. 469, 7331, p. 554-8 5 p.

    Research output: Contribution to journalArticle

  84. Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

    Ashelford, K., Eriksson, M. E., Allen, C. M., D'Amore, R., Johansson, M., Gould, P., Kay, S., Millar, A. J., Hall, N. & Hall, A., 2011, In : Genome Biology. 12, 3, p. R28

    Research output: Contribution to journalArticle

  85. Light inputs shape the Arabidopsis circadian system

    Wenden, B., Kozma-Bognár, L., Edwards, K. D., Hall, A. J. W., Locke, J. C. W. & Millar, A. J., 2011, In : The Plant Journal. 66, 3, p. 480-91 12 p.

    Research output: Contribution to journalArticle

  86. Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus

    Sorokina, O., Corellou, F., Dauvillée, D., Sorokin, A., Goryanin, I., Ball, S., Bouget, F-Y. & Millar, A. J., 2011, In : BMC Systems Biology. 5, 36, 16 p.

    Research output: Contribution to journalArticle

  87. Multiple light inputs to a simple clock circuit allow complex biological rhythms

    Troein, C., Corellou, F., Dixon, L. E., van Ooijen, G., O'Neill, J. S., Bouget, F-Y. & Millar, A. J., 2011, In : The Plant Journal. 66, 2, p. 375-85 11 p.

    Research output: Contribution to journalArticle

  88. One hundred important questions facing plant science research

    Grierson, C. S., Barnes, S. R., Chase, M. W., Clarke, M., Grierson, D., Edwards, K. J., Jellis, G. J., Jones, J. D., Knapp, S., Oldroyd, G., Poppy, G., Temple, P., Williams, R., Bastow, R. & Millar, A., 2011, In : New Phytologist. 192, 1, p. 6-12 7 p.

    Research output: Contribution to journalArticle

  89. Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock

    Johansson, M., McWatters, H. G., Bakó, L., Takata, N., Gyula, P., Hall, A., Somers, D. E., Millar, A. J. & Eriksson, M. E., 2011, In : Plant physiology. 155, 4, p. 2108-22 15 p.

    Research output: Contribution to journalArticle

  90. Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri

    Le Bihan, T., Martin, S. F., Chirnside, E. S., van Ooijen, G., Barrios-Llerena, M. E., O'Neill, J. S., Shliaha, P. V., Kerr, L. E. & Millar, A. J., 2011, In : Journal of proteomics. 74, 10, p. 2060-2070 11 p.

    Research output: Contribution to journalArticle

  91. Stochastic properties of the plant circadian clock

    Guerriero, M. L., Pokhilko, A., Fernández, A. P., Halliday, K. J., Millar, A. J. & Hillston, J., 2011, In : Journal of the Royal Society Interface.

    Research output: Contribution to journalArticle

  92. Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis

    Dixon, L. E., Knox, K., Kozma-Bognar, L., Southern, M. M., Pokhilko, A. & Millar, A. J., 2011, In : Current Biology. 21, 2, p. 120-5 6 p.

    Research output: Contribution to journalArticle

  93. The Biodare Data Repository

    Zielinski, T., Moore, A., Troup, E., Beaton, M., Adams, R., Halliday, K. & Millar, A., 2011

    Research output: Other contribution

  94. 2010
  95. Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models

    Saithong, T., Painter, K. J. & Millar, A. J., Dec 2010, In : PLoS ONE. 5, 12, 11 p., e15589.

    Research output: Contribution to journalArticle

  96. Quantitative analysis of regulatory flexibility under changing environmental conditions

    Edwards, K. D., Akman, O. E., Knox, K., Lumsden, P. J., Thomson, A. W., Brown, P. E., Pokhilko, A., Kozma-Bognar, L., Nagy, F., Rand, D. A. & Millar, A. J., 2 Nov 2010, In : Molecular Systems Biology. 6, 11 p., 424.

    Research output: Contribution to journalArticle

  97. The contributions of interlocking loops and extensive nonlinearity to the properties of circadian clock models

    Saithong, T., Painter, K. J. & Millar, A. J., Nov 2010, In : PLoS ONE. 5, 11, 11 p., e13867.

    Research output: Contribution to journalArticle

  98. Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model

    Pokhilko, A., Hodge, S. K., Stratford, K., Knox, K., Edwards, K. D., Thomson, A. W., Mizuno, T. & Millar, A. J., 21 Sep 2010, In : Molecular Systems Biology. 6, 10 p., 416.

    Research output: Contribution to journalArticle

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