Edinburgh Research Explorer

Andrew Millar

Chair of Systems Biology

  1. 2014
  2. Light and circadian regulation of clock components aids flexible responses to environmental signals

    Dixon, L. E., Hodge, S. K., van Ooijen, G., Troein, C., Akman, O. E. & Millar, A. J., 20 May 2014, In: New Phytologist.

    Research output: Contribution to journalArticlepeer-review

  3. Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure

    Moore, A., Zielinski, T. & Millar, A., 8 Apr 2014, Plant Circadian Networks: Methods and Protocols. Staiger, D. (ed.). Springer New York, Vol. 1158. p. 13-44 32 p. (Methods in Molecular Biology; vol. 1158).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  4. Mathematical model of arabidopsis vegetative growth: The framework model

    Chew, Y. H. & Millar, A., 2014

    Research output: Other contribution

  5. Regulatory principles and experimental approaches to the circadian control of starch turnover

    Seaton, D. D., Ebenhöh, O., Millar, A. J. & Pokhilko, A., 2014, In: Journal of the Royal Society Interface. 11, 91, 20130979.

    Research output: Contribution to journalArticlepeer-review

  6. Strengths and limitations of period estimation methods for circadian data

    Zielinski, T., Moore, A. M., Troup, E., Halliday, K. J. & Millar, A. J., 2014, In: PLoS ONE. 9, 5, e96462.

    Research output: Contribution to journalArticlepeer-review

  7. 2013
  8. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 Is Required for Circadian Periodicity through the Promotion of Nucleo-Cytoplasmic mRNA Export in Arabidopsis

    Macgregor, D. R., Gould, P., Foreman, J., Griffiths, J., Bird, S., Page, R., Stewart, K., Steel, G., Young, J., Paszkiewicz, K., Millar, A. J., Halliday, K. J., Hall, A. J. & Penfield, S., 19 Nov 2013, In: The Plant Cell. 14 p.

    Research output: Contribution to journalArticlepeer-review

  9. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

    Keily, J., MacGregor, D. R., Smith, R. W., Millar, A. J., Halliday, K. J. & Penfield, S., 31 Oct 2013, In: The Plant Journal. 76, 2, p. 247-57 11 p.

    Research output: Contribution to journalArticlepeer-review

  10. Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga

    van Ooijen, G., Martin, S. F., Barrios-Llerena, M. E., Hindle, M., Le Bihan, T., O'Neill, J. S. & Millar, A. J., 15 Oct 2013, In: BMC Cell Biology. 14, 1, 46.

    Research output: Contribution to journalArticlepeer-review

  11. SBSI: An extensible distributed software infrastructure for parameter estimation in systems biology

    Adams, R., Clark, A., Lebedeva, G., Millar, A. J., Gilmore, S., Yamaguchi, A., Goryanin, I., Hanlon, N., Tsorman, N., Ali, S., Goltsov, A., Sorokin, A., Akman, O. E. & Troein, C., 1 Mar 2013, In: Bioinformatics. 29, 5, p. 664-665 2 p.

    Research output: Contribution to journalArticlepeer-review

  12. Functional analysis of Casein Kinase 1 in a minimal circadian system

    van Ooijen, G., Hindle, M., Martin, S. F., Barrios-Llerena, M., Sanchez, F., Bouget, F-Y., O'Neill, J. S., Le Bihan, T. & Millar, A. J., 2013, In: PLoS ONE. 8, 7, e70021.

    Research output: Contribution to journalArticlepeer-review

  13. Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics

    Ocone, A., Millar, A. J. & Sanguinetti, G., 2013, In: Bioinformatics. 29, 7, p. 910-916 7 p.

    Research output: Contribution to journalArticlepeer-review

  14. Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

    Pokhilko, A., Mas, P. & Millar, A. J., 2013, In: BMC Systems Biology. 7, 1, 12 p., 23.

    Research output: Contribution to journalArticlepeer-review

  15. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

    Gould, P. D., Ugarte, N., Domijan, M., Costa, M., Foreman, J., Macgregor, D., Rose, K., Griffiths, J., Millar, A. J., Finkenstädt, B., Penfield, S., Rand, D. A., Halliday, K. J. & Hall, A. J. W., 2013, In: Molecular Systems Biology. 9, 650.

    Research output: Contribution to journalArticlepeer-review

  16. Temperature-sensitive version of P2010 Arabidopsis clock model by Mirela Domijan, from Gould et al. 2013.

    Domijan, M., Halliday, K., Hall, A. J. W., Millar, A. & Rand, D. A., 2013

    Research output: Other contribution

  17. Variation in plastic responses of a globally distributed picoplankton species to ocean acidification

    Schaum, E., Rost, B., Millar, A. J. & Collins, S., 2013, In: Nature Climate Change. 3, p. 298–302

    Research output: Contribution to journalArticlepeer-review

  18. 2012
  19. Erratum: Digital clocks: Simple Boolean models can quantitatively describe circadian systems (Journal of the Royal Society Interface (2012) 9 (3573) DOI: 10.1098/rsif.2012.0673)

    Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. & Ghazal, P., 7 Dec 2012, In: Journal of the Royal Society Interface. 9, 77, p. 3578 1 p.

    Research output: Contribution to journalArticlepeer-review

  20. Non-transcriptional oscillators in circadian timekeeping

    van Ooijen, G. & Millar, A. J., 1 Nov 2012, In: Trends in biochemical sciences. 37, 11, p. 484-492 9 p.

    Research output: Contribution to journalArticlepeer-review

  21. Digital clocks: simple Boolean models can quantitatively describe circadian systems

    Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. & Ghazal, P., 7 Sep 2012, In: Journal of the Royal Society Interface. 9, 74, p. 2365-2382 18 p.

    Research output: Contribution to journalArticlepeer-review

  22. The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models

    Adams, R. R., Tsorman, N., Stratford, K., Akman, O. E., Gilmore, S., Juty, N., Le Novère, N. & Millar, A. J., Aug 2012, In: Journal of biological rhythms. 27, 4, p. 328-332 6 p.

    Research output: Contribution to journalArticlepeer-review

  23. Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

    Huang, W., Pérez-García, P., Pokhilko, A., Millar, A. J., Antoshechkin, I., Riechmann, J. L. & Mas, P., 6 Apr 2012, In: Science. 336, 6077, p. 75-79 5 p.

    Research output: Contribution to journalArticlepeer-review

  24. Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

    Wenden, B., Toner, D. L. K., Hodge, S. K., Grima, R. & Millar, A. J., Apr 2012, In: Proceedings of the National Academy of Sciences. 109, 17, p. 6757-6762

    Research output: Contribution to journalArticlepeer-review

  25. Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In: Nature. 485, 7399, p. 459–464

    Research output: Contribution to journalArticle

  26. FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering

    Song, Y. H., Smith, R. W., To, B. J., Millar, A. J. & Imaizumi, T., 2012, In: Science. 336, 6084, p. 1045-1049 5 p.

    Research output: Contribution to journalArticlepeer-review

  27. Genomic Transformation of the Picoeukaryote Ostreococcus tauri

    van Ooijen, G., Knox, K., Kis, K., Bouget, F-Y. & Millar, A. J., 2012, In: Journal of Visualized Experiments (JoVE). 65, e4074.

    Research output: Contribution to journalArticlepeer-review

  28. Peroxiredoxins are conserved markers of circadian rhythms

    Edgar, R. S., Green, E. W., Zhao, Y., van Ooijen, G., Olmedo, M., Qin, X., Xu, Y., Pan, M., Valekunja, U. K., Feeney, K. A., Maywood, E. S., Hastings, M. H., Baliga, N. S., Merrow, M., Millar, A. J., Johnson, C. H., Kyriacou, C. P., O'Neill, J. S. & Reddy, A. B., 2012, In: Nature. 485, 7399, p. 459-464 6 p.

    Research output: Contribution to journalArticlepeer-review

  29. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

    Pokhilko, A., Fernández, A. P., Edwards, K. D., Southern, M. M., Halliday, K. J. & Millar, A. J., 2012, In: Molecular Systems Biology. 8, 574.

    Research output: Contribution to journalArticlepeer-review

  30. tbd (in Japanese)

    Millar, A., 2012, In: Saibou Kougaku (Cell Technology). 30, 12

    Research output: Contribution to journalLiterature review

  31. 2011
  32. One hundred important questions facing plant science research

    Grierson, C. S., Barnes, S. R., Chase, M. W., Clarke, M., Grierson, D., Edwards, K. J., Jellis, G. J., Jones, J. D., Knapp, S., Oldroyd, G., Poppy, G., Temple, P., Williams, R., Bastow, R. & Millar, A., 31 Oct 2011, In: New Phytologist. 192, 1, p. 6-12 7 p.

    Research output: Contribution to journalLetterpeer-review

  33. A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis

    Kolmos, E., Herrero, E., Bujdoso, N., Millar, A. J., Tóth, R., Gyula, P., Nagy, F. & Davis, S. J., Sep 2011, In: The Plant Cell. 23, 9, p. 3230-3246 17 p.

    Research output: Contribution to journalArticlepeer-review

  34. Light inputs shape the Arabidopsis circadian system

    Wenden, B., Kozma-Bognár, L., Edwards, K. D., Hall, A. J. W., Locke, J. C. W. & Millar, A. J., 31 May 2011, In: The Plant Journal. 66, 3, p. 480-491 12 p.

    Research output: Contribution to journalArticlepeer-review

  35. Proteasome Function Is Required for Biological Timing throughout the Twenty-Four Hour Cycle

    van Ooijen, G., Dixon, L. E., Troein, C. & Millar, A. J., May 2011, In: Current Biology. 21, 10, p. 869-875 7 p.

    Research output: Contribution to journalArticlepeer-review

  36. Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance

    O'Neill, J. S., van Ooijen, G., Le Bihan, T. & Millar, A. J., Apr 2011, In: Journal of biological rhythms. 26, 2, p. 91-98 8 p.

    Research output: Contribution to journalArticlepeer-review

  37. Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis

    Pokhilko, A., Ramos, J. A., Holtan, H., Maszle, D. R., Khanna, R. & Millar, A. J., Feb 2011, In: Journal of Theoretical Biology. 270, 1, p. 31-41 11 p.

    Research output: Contribution to journalArticlepeer-review

  38. An International Model for the Future of Plant Science

    Millar, A., 2011, BBSRC and NSF.

    Research output: Book/ReportCommissioned report

  39. Circadian rhythms persist without transcription in a eukaryote

    O'Neill, J. S., van Ooijen, G., Dixon, L. E., Troein, C., Corellou, F., Bouget, F-Y., Reddy, A. B. & Millar, A. J., 2011, In: Nature. 469, 7331, p. 554-8 5 p.

    Research output: Contribution to journalArticlepeer-review

  40. Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

    Ashelford, K., Eriksson, M. E., Allen, C. M., D'Amore, R., Johansson, M., Gould, P., Kay, S., Millar, A. J., Hall, N. & Hall, A., 2011, In: Genome Biology. 12, 3, p. R28

    Research output: Contribution to journalArticlepeer-review

  41. Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus

    Sorokina, O., Corellou, F., Dauvillée, D., Sorokin, A., Goryanin, I., Ball, S., Bouget, F-Y. & Millar, A. J., 2011, In: BMC Systems Biology. 5, 36, 16 p.

    Research output: Contribution to journalArticlepeer-review

  42. Multiple light inputs to a simple clock circuit allow complex biological rhythms

    Troein, C., Corellou, F., Dixon, L. E., van Ooijen, G., O'Neill, J. S., Bouget, F-Y. & Millar, A. J., 2011, In: The Plant Journal. 66, 2, p. 375-85 11 p.

    Research output: Contribution to journalArticlepeer-review

  43. Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock

    Johansson, M., McWatters, H. G., Bakó, L., Takata, N., Gyula, P., Hall, A., Somers, D. E., Millar, A. J. & Eriksson, M. E., 2011, In: Plant physiology. 155, 4, p. 2108-22 15 p.

    Research output: Contribution to journalArticlepeer-review

  44. Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri

    Le Bihan, T., Martin, S. F., Chirnside, E. S., van Ooijen, G., Barrios-Llerena, M. E., O'Neill, J. S., Shliaha, P. V., Kerr, L. E. & Millar, A. J., 2011, In: Journal of proteomics. 74, 10, p. 2060-2070 11 p.

    Research output: Contribution to journalArticlepeer-review

  45. Stochastic properties of the plant circadian clock

    Guerriero, M. L., Pokhilko, A., Fernández, A. P., Halliday, K. J., Millar, A. J. & Hillston, J., 2011, In: Journal of the Royal Society Interface.

    Research output: Contribution to journalArticlepeer-review

  46. Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis

    Dixon, L. E., Knox, K., Kozma-Bognar, L., Southern, M. M., Pokhilko, A. & Millar, A. J., 2011, In: Current Biology. 21, 2, p. 120-5 6 p.

    Research output: Contribution to journalArticlepeer-review

  47. The Biodare Data Repository

    Zielinski, T., Moore, A., Troup, E., Beaton, M., Adams, R., Halliday, K. & Millar, A., 2011

    Research output: Other contribution

  48. 2010
  49. Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models

    Saithong, T., Painter, K. J. & Millar, A. J., Dec 2010, In: PLoS ONE. 5, 12, 11 p., e15589.

    Research output: Contribution to journalArticlepeer-review

  50. Quantitative analysis of regulatory flexibility under changing environmental conditions

    Edwards, K. D., Akman, O. E., Knox, K., Lumsden, P. J., Thomson, A. W., Brown, P. E., Pokhilko, A., Kozma-Bognar, L., Nagy, F., Rand, D. A. & Millar, A. J., 2 Nov 2010, In: Molecular Systems Biology. 6, 11 p., 424.

    Research output: Contribution to journalArticlepeer-review