Edinburgh Research Explorer

Dr Andrew Whalen

Research Fellow

  1. 2020
  2. Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets

    Money, D., Wilson, D., Jenko, J., Whalen, A., Thorn, S., Gorjanc, G. & Hickey, J. M., 8 Jul 2020, In : Genetics Selection Evolution. 52, 1, p. 38

    Research output: Contribution to journalArticle

  3. AlphaFamImpute: high accuracy imputation in full-sib families from genotype-by-sequencing data

    Whalen, A., Gorjanc, G. & Hickey, J. M., 28 May 2020, In : Bioinformatics.

    Research output: Contribution to journalArticle

  4. Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations

    Ros-Freixedes, R., Whalen, A., Chen, C-Y., Gorjanc, G., Herring, WO., Mileham, A. J. & Hickey, J., 6 Apr 2020, In : Genetics Selection Evolution.

    Research output: Contribution to journalArticle

  5. Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling

    Ros-Freixedes, R., Whalen, A., Gorjanc, G., Mileham, A. J. & Hickey, J., 6 Apr 2020, In : Genetics Selection Evolution.

    Research output: Contribution to journalArticle

  6. 2019
  7. Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities

    Whalen, A., Gorjanc, G. & Hickey, J., 26 Jun 2019, In : Genetics Selection Evolution.

    Research output: Contribution to journalArticle

  8. 2018
  9. Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees

    Whalen, A., Ros Freixedes, R., Wilson, D. L., Gorjanc, G. & Hickey, J., 18 Dec 2018, In : Genetics Selection Evolution. 50, 1, 15 p., 67.

    Research output: Contribution to journalArticle

  10. Parentage assignment with genotyping-by-sequencing data

    Whalen, A., Gorjanc, G. & Hickey, J., 13 Dec 2018, In : Journal of Animal Breeding and Genetics. 11 p.

    Research output: Contribution to journalArticle

  11. Assessment of the performance of hidden Markov models for imputation in animal breeding

    Whalen, A., Gorjanc, G., Ros Freixedes, R. & Hickey, J., Sep 2018, In : Genetics Selection Evolution. 50, 1, 44.

    Research output: Contribution to journalArticle

  12. 2017
  13. Fish pool their experience to solve problems collectively

    Webster, M. M., Whalen, A. & Laland, K. N., 18 Apr 2017, In : Nature Ecology & Evolution. 1, 5, 0135.

    Research output: Contribution to journalArticle

  14. Adding population structure to models of language evolution by iterated learning

    Whalen, A. & Griffiths, T. L., 1 Feb 2017, In : Journal of Mathematical Psychology. 76, p. 1-6

    Research output: Contribution to journalArticle