Edinburgh Research Explorer

Prof Dave Burt

(Former employee or visitor)

  1. 2019
  2. Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds

    Woodcock, M., Gheyas, A., Mason, A., Nandi, S., Taylor, L., Sherman, A., Smith, J., Burt, D., Hawken, R. & McGrew, M., 1 Oct 2019, In : Proceedings of the National Academy of Sciences.

    Research output: Contribution to journalArticle

  3. The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response.

    Morris, K., Hindle, M., Boitard, S., Burt, D., Danner, A. F., Eory, L., Forrest, H. L., Gourichon, D., Gros, J., Gourichon, L., Hillier, L., Jaffredo, T., Khoury, H., Leterrier, C., Loudon, A., Mason, AS., Meddle, S., Minvielle, F., Minx, P., Pitel, F. & 8 others, Seiler, J. P., Shimmura, T., Tomlinson, C., Vignal, A., Webster, R. G., Yoshimura, T., Warren, W. C. & Smith, J., 13 Mar 2019, (bioRxiv).

    Research output: Working paper

  4. 2018
  5. Molecular mechanisms for the adaptive switching between the OAS/RNase L and OASL/RIG-I pathways in birds and mammals: Adaptive exchanging of the OAS/RNase L and OASL/RIG-I pathway

    Rong, E., Wang, X., Chen, H., Yang, C., Hu, J., Liu, W., Wang, Z., Chen, X., Zheng, H., Pu, J., Sun, H., Smith, J., Burt, D., Liu, J., Li, N. & Huang, Y., 20 Jun 2018, In : Frontiers in Immunology. 9, 1398.

    Research output: Contribution to journalArticle

  6. Population genomic data reveal genes related to important traits of quail

    Wu, Y., Zhang, Y., Hou, Z., Fan, G., Pi, J., Sun, S., Chen, J., Liu, H., Du, X., Shen, J., Hu, G., Chen, W., Pan, A., Yin, P., Chen, X., Pu, Y., Zhang, H., Liang, Z., Jian, J., Zhang, H. & 20 others, Wu, B., Sun, J., Chen, J., Tao, H., Yang, T., Xiao, H., Yang, H., Zheng, C., Bai, M., Fang, X., Burt, D. W., Wang, W., Li, Q., Xu, X., Li, C., Yang, H., Wang, J., Yang, N., Liu, X. & Du, J., 11 May 2018, In : GigaScience. 7, 5, giy049.

    Research output: Contribution to journalArticle

  7. Genome wide changes in DNA methylation mark the changing seasons in mammalian calendar cells

    Hindle, M., Wood, S., Mizoro, Y., Paton, I., Meddle, S., Loudon, A. & Burt, D., 2018, (Unpublished).

    Research output: Contribution to conferenceAbstract

  8. 2017
  9. Diurnal and photoperiodic changes in Thyrotrophin stimulating hormone β (TSHβ) expression, and associated regulation of deiodinase enzymes (DIO2, DIO3) in the female juvenile chicken hypothalamus

    Dunn, I. C., Wilson, P., Shi, Y., Burt, D. W., Loudon, A. S. I. & Sharp, P. J., Dec 2017, In : Journal of Neuroendocrinology. 29, 12, e12554.

    Research output: Contribution to journalArticle

  10. Mapping of leptin and its syntenic genes to chicken chromosome 1p

    Seroussi, E., Pitel, F., Leroux, S., Morisson, M., Bornelöv, S., Miyara, S., Yosefi, S., Cogburn, L. A., Burt, D. W., Anderson, L. & Friedman-Einat, M., 9 Aug 2017, In : BMC Genetics. 18, 1, p. 77

    Research output: Contribution to journalArticle

  11. Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human

    Kuo, R. I., Tseng, E., Eory, L., Paton, I. R., Archibald, A. L. & Burt, D. W., 24 Apr 2017, In : BMC Genomics. 18, 1, p. 323

    Research output: Contribution to journalArticle

  12. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

    Warren, W. C., Hillier, L. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V., Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 1 Jan 2017, In : G3. 7, 1, p. 109-117

    Research output: Contribution to journalArticle

  13. 2016
  14. Deciphering chicken fatness trait with integrative genetic and genomic approaches.

    Khoo, C. K., Gheyas, A., Kuo, R., Eory, L., Hocking, P. M. & Burt, D., Sep 2016, In : Journal of Animal Science. 94, Suppt. 4, p. 36-37 2 p.

    Research output: Contribution to journalMeeting abstract

  15. A new look at the LTR retrotransposon content of the chicken genome

    Mason, A. S., Fulton, J. E., Hocking, P. M. & Burt, D. W., 30 Aug 2016, In : BMC Genomics. 17, p. 688

    Research output: Contribution to journalArticle

  16. A strategy to discover new organizers identifies a putative heart organizer

    Anderson, C., Khan, M. A. F., Wong, F., Solovieva, T., Oliveira, N. M. M., Baldock, R. A., Tickle, C., Burt, D. W. & Stern, C. D., Aug 2016, In : Nature Communications. 7, p. 12656

    Research output: Contribution to journalArticle

  17. Novel insights into chromosome evolution in birds, archosaurs, and reptiles

    Farre, M., Narayan, J., Slavov, G. T., Damas, J., Auvil, L., Cai, L., Jarvis, E. D., Burt, D., Griffin, D. K. & Larkin, D. M., Aug 2016, In : Genome Biology and Evolution. 8, 8, p. 2442-2451

    Research output: Contribution to journalLetter

  18. Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium

    Pengelly, R. J., Gheyas, A., Kuo, R., Mossotto, E., Seaby, E. G., Burt, D., Ennis, S. & Collins, A., 6 Jul 2016, In : Heredity. 117, 5, p. 375-382

    Research output: Contribution to journalArticle

  19. Leukocyte protein Trojan, as a candidate for apoptotic regulatory role

    Petrov, P., Syrjanen, R., Uchida, T., Burt, D. & Vainio, O., May 2016, In : Scandinavian Journal of Immunology. 83, 5, p. 353-353 1 p.

    Research output: Contribution to journalMeeting abstract

  20. Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross

    Moura, A. S. A. M. T., Ledur, M. C., Boschiero, C., Nones, K., Pinto, L. F. B., Jaenisch, F. R. F., Burt, D. W. & Coutinho, L. L., May 2016, In : Journal of applied genetics. 57, 2, p. 215-224

    Research output: Contribution to journalArticle

  21. Animal genomics and infectious disease resistance in poultry

    Smith, J., Gheyas, A. & Burt, D. W., 1 Apr 2016, In : Revue scientifique et technique-Office international des epizooties. 35, 1, p. 105-19 15 p.

    Research output: Contribution to journalLiterature review

  22. 2015
  23. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

    The FAANG Consortium, 1 Dec 2015, In : Genome Biology. 16, 1, 57.

    Research output: Contribution to journalArticle

  24. Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals

    Wood, S. H., Christian, H. C., Miedzinska, K., Saer, B. R. C., Johnson, M., Paton, B., Yu, L., Mcneilly, J., Davis, J. R. E., McNeilly, A. S., Burt, D. & Loudon, A. S. I., 19 Oct 2015, In : Current Biology. 25, 20, p. 2651–2662

    Research output: Contribution to journalArticle

  25. Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken

    Wragg, D., Mason, A. S., Yu, L., Kuo, R., Lawal, R. A., Desta, T. T., Mwacharo, J. M., Cho, C-Y., Kemp, S., Burt, D. W. & Hanotte, O., 14 Oct 2015, In : BMC Genomics. 16, 1, p. 784

    Research output: Contribution to journalArticle

  26. The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

    Smith, J., Sadeyen, J-R., Cavanagh, D., Kaiser, P. & Burt, D. W., 9 Oct 2015, In : BMC Veterinary Research. 11, 1, 256.

    Research output: Contribution to journalArticle

  27. Evolution of the avian β-defensin and cathelicidin genes

    Cheng, Y., Prickett, M. D., Gutowska, M., Kuo, R., Belov, K. & Burt, D. W., 15 Sep 2015, In : BMC Evolutionary Biology. 15, 1, p. 188

    Research output: Contribution to journalArticle

  28. Transcriptomic Profiling of Virus-Host Cell Interactions following Chicken Anaemia Virus (CAV) Infection in an In Vivo Model

    Giotis, E. S., Rothwell, L., Scott, A., Hu, T., Talbot, R., Todd, D., Burt, D. W., Glass, E. J. & Kaiser, P., 5 Aug 2015, In : PLoS ONE. 10, 8, e0134866.

    Research output: Contribution to journalArticle

  29. Third Report on Chicken Genes and Chromosomes 2015

    Schmid, M., Smith, J., Burt, D. W., Aken, B. L., Antin, P. B., Archibald, A. L., Ashwell, C., Blackshear, P. J., Boschiero, C., Brown, C. T., Burgess, S. C., Cheng, H. H., Chow, W., Coble, D. J., Cooksey, A., Crooijmans, R. P. M. A., Damas, J., Davis, R. V. N., De Koning, D., Delany, M. E. & 84 others, Derrien, T., Desta, T. T., Dunn, I. C., Dunn, M., Ellegren, H., Eory, L., Erb, I., Farre, M., Fasold, M., Fleming, D., Flicek, P., Fowler, K. E., Fresard, L., Froman, D. P., Garceau, V., Gardner, P. P., Gheyas, A. A., Griffin, D. K., Groenen, M. A. M., Haaf, T., Hanotte, O., Hart, A., Hasler, J., Hedges, S. B., Hertel, J., Howe, K., Hubbard, A., Hume, D. A., Kaiser, P., Kedra, D., Kemp, S., Klopp, C., Kniel, K. E., Kuo, R., Lagarrigue, S., Lamont, S. J., Larkin, D. M., Lawal, R. A., Markland, S. M., Mccarthy, F., Mccormack, H. A., Mcpherson, M. C., Motegi, A., Muljo, S. A., Munsterberg, A., Nag, R., Nanda, I., Neuberger, M., Nitsche, A., Notredame, C., Noyes, H., O''connor, R., O''hare, E. A., Oler, A. J., Ommeh, S. C., Pais, H., Persia, M., Pitel, F., Preeyanon, L., Prieto Barja, P., Pritchett, E. M., Rhoads, D. D., Robinson, C. M., Romanov, M. N., Rothschild, M., Roux, P., Schmidt, C. J., Schneider, A., Schwartz, M., Searle, S. M., Skinner, M. A., Smith, C. A., Stadler, P. F., Steeves, T. E., Steinlein, C., Sun, L., Takata, M., Ulitsky, I., Wang, Q., Wang, Y., Warren, W. C., Wood, J. M. D., Wragg, D. & Zhou, H., Aug 2015, In : Cytogenetic and Genome Research. 145, 2, p. 78-179

    Research output: Contribution to journalArticle

  30. Functional classification of 15 million SNPs detected from diverse chicken populations

    Gheyas, A. A., Boschiero, C., Eory, L., Ralph, H., Kuo, R., Woolliams, J. A. & Burt, D. W., 29 Apr 2015, In : DNA Research. 22, 3, p. 205-217

    Research output: Contribution to journalArticle

  31. Characterization of the avian trojan gene family reveals contrasting evolutionary constraints

    Petrov, P., Syrjänen, R., Smith, J., Gutowska, M. W., Uchida, T., Vainio, O. & Burt, D. W., 24 Mar 2015, In : PLoS ONE. 10, 3, p. e0121672

    Research output: Contribution to journalArticle

  32. Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus

    Vijayakumar, P., Mishra, A., Ranaware, P. B., Kolte, A. P., Kulkarni, D. D., Burt, D. W. & Raut, A. A., 15 Mar 2015, In : Gene. 559, 1, p. 77-85

    Research output: Contribution to journalArticle

  33. Analysis of the early immune response to infection by Infectious Bursal Disease Virus (IBDV) in chickens differing in their resistance to the disease

    Smith, J., Sadeyen, J-R., Butter, C., Kaiser, P. & Burt, D. W., Mar 2015, In : Journal of Virology. 89, 5, p. 2469-2482

    Research output: Contribution to journalArticle

  34. SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition

    Godoy, T. F., Moreira, G. C. M., Boschiero, C., Gheyas, A. A., Gasparin, G., Paduan, M., Andrade, S. C. S., Montenegro, H., Burt, D. W., Ledur, M. C. & Coutinho, L. L., 18 Feb 2015, In : Animal Genetics. 46, 2, p. 158–163

    Research output: Contribution to journalArticle

  35. Phylogenomic analyses data of the avian phylogenomics project

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Alfaro-Núñez, A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 8 others, Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P., Zhang, G. & Avian Phylogenomics Consortium, 12 Feb 2015, In : GigaScience. 4, p. 4

    Research output: Contribution to journalArticle

  36. Avianbase: a community resource for bird genomics

    Eory, L., Gilbert, M. T. P., Li, C., Li, B., Archibald, A., Aken, B. L., Zhang, G., Jarvis, E., Flicek, P. & Burt, D. W., 29 Jan 2015, In : Genome Biology. 16, 1, 21.

    Research output: Contribution to journalArticle

  37. Cetaceans evolution: insights from the genome sequences of common minke whales

    Park, J. Y., An, Y-R., Kanda, N., An, C-M., An, H. S., Kang, J-H., Kim, E. M., An, D-H., Jung, H., Joung, M., Park, M. H., Yoon, S. H., Lee, B-Y., Lee, T., Kim, K-W., Park, W. C., Shin, D. H., Lee, Y. S., Kim, J., Kwak, W. & 7 others, Kim, H. J., Kwon, Y-J., Moon, S., Kim, Y., Burt, D. W., Cho, S. & Kim, H., 22 Jan 2015, In : BMC Genomics. 16, 8 p., 13.

    Research output: Contribution to journalArticle

  38. Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens

    Moreira, G. C. M., Godoy, T. F., Boschiero, C., Gheyas, A., Gasparin, G., Andrade, S. C. S., Paduan, M., Montenegro, H., Burt, D. W., Ledur, M. C. & Coutinho, L. L., Jan 2015, In : Animal Genetics. 46, 2, p. 141-147

    Research output: Contribution to journalArticle

  39. Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes

    Boschiero, C., Gheyas, A. A., Ralph, H. K., Eory, L., Paton, B., Kuo, R., Fulton, J., Preisinger, R., Kaiser, P. & Burt, D. W., 2015, In : BMC Genomics. 16, 1, 562.

    Research output: Contribution to journalArticle

  40. 2014
  41. Comparative genomics reveals insights into avian genome evolution and adaptation

    Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 31 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., da Fonseca, R. R., Alfaro-Núñez, A., Schubert, M., Orlando, L., Mourier, T., Burt, D. W., Avian Genome Consortium & Smith, J., 12 Dec 2014, In : Science. 346, 6215, p. 1311-20 10 p.

    Research output: Contribution to journalArticle

  42. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

    Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M. T. P., Yang, H., Wang, J., Lambert, D. M., Wang, J. & Zhang, G., 12 Dec 2014, In : GigaScience. 3, 1, p. 27

    Research output: Contribution to journalArticle

  43. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldon, T., Capella-Gutierrez, S., Huerta-Cepas, J., Rekepalli, B., Munch, K., Schierup, M., Lindow, B., Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, M. F., Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Cruz Schneider, M. P., Prosdocimi, F., Samaniego, J. A., Vargas Velazquez, A. M., Alfaro-Nunez, A., Campos, P. F., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldsa, J., Orlando, L., Barker, F. K., Jonsson, K. A., Johnson, W., Koepfli, K-P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, C., Willerslev, E., Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alstrom, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P. & Zhang, G., 12 Dec 2014, In : Science. 346, 6215, p. 1320-1331 12 p.

    Research output: Contribution to journalArticle

  44. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

    Romanov, M. N., Farre, M., Lithgow, P. E., Fowler, K. E., Skinner, B. M., O'Connor, R., Fonseka, G., Backstrom, N., Matsuda, Y., Nishida, C., Houde, P., Jarvis, E. D., Ellegren, H., Burt, D. W., Larkin, D. M. & Griffin, D. K., 11 Dec 2014, In : BMC Genomics. 15, 17 p., 1060.

    Research output: Contribution to journalArticle

  45. Identification of molecular circuits involved in epigenetic re-modelling in the ovine pars tuberalis using next generation sequencing data

    Yu, L., Wood, S. H., Miedzinska, K., Paton, B., McNeilly, A., Loudon, A. & Burt, D., 2 Aug 2014, 34th International Society Animal Genetic Conference - Xi'An China.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

    Olivera-Martinez, I., Schurch, N., Li, R. A., Song, J., Halley, P. A., Das, R. M., Burt, D. W., Barton, G. J. & Storey, K. G., Aug 2014, In : Development. 141, 16, p. 3266-76 11 p.

    Research output: Contribution to journalArticle

  47. Clocks For All Seasons: Unravelling the Genetic Circadian and Interval Timing Mechanisms in the Mammalian Hypothalamus and Pituitary

    Wood, S., Miedzinska, K., McNeilly, A., Christian, H., Davis, J., Yu, L., Saer, B., Burt, D. & Loudon, A., 14 Jun 2014, The 2014 Meeting of the Society for Research on Biological Rhythms.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  48. All creatures great and small: 10 years on

    Griffen, D. & Burt, D., 2014, In : Chromosome Research. 22, 1, p. 1-6

    Research output: Contribution to journalArticle

  49. Trojan, a Possible Regulator of Apoptosis, Belongs to a Novel Protein Family

    Petrov, P., Burt, D., Syrjanen, R., Uchida, T. & Vainio, O., 2014, In : Scandinavian Journal of Immunology. 79, 6, p. 436 1 p.

    Research output: Contribution to journalMeeting abstract

  50. 2013
  51. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse

    Kim, H., Lee, T., Park, W., Lee, J. W., Kim, J., Lee, B-Y., Ahn, H., Moon, S., Cho, S., Do, K-T., Kim, H-S., Lee, H-K., Lee, C-K., Kong, H-S., Yang, Y-M., Park, J., Kim, H-M., Kim, B. C., Hwang, S., Bhak, J. & 4 others, Burt, D., Park, K-D., Cho, B-W. & Kim, H., Jun 2013, In : DNA Research. 20, 3, p. 287-298 12 p.

    Research output: Contribution to journalArticle

  52. Chick genomics

    Burt, D. W. & Farlie, P. G., May 2013, In : Genesis. 51, 5 (Sp Iss S1), p. 295-295 1 p.

    Research output: Contribution to journalEditorial

  53. Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens

    Dunn, I. C., Meddle, S., Wilson, P., Wardle, C. A., Law, A., Bishop, V., Hindar, C., Robertson, G. W., Burt, D. W., Ellison, S. J., Morrice, D. M. & Hocking, P. M., May 2013, In : American Journal of Physiology - Endocrinology And Metabolism. 304, 9, p. E909-E921

    Research output: Contribution to journalArticle

  54. Npas4 is activated by melatonin, and drives the clock gene Cry1 in the ovine pars tuberalis

    West, A., Dupre, S., Yu, L., Paton, B., Miedzinska, K., McNeilly, A., Davis, J., Burt, D. & Loudon, A., 18 Apr 2013, In : Molecular Endocrinology. 27, 6, p. 979-989 11 p.

    Research output: Contribution to journalArticle

  55. Microarray resources for genetic and genomic studies in chicken: a review

    Gheyas, A. A. & Burt, D. W., Mar 2013, In : Genesis. 51, 5 (Sp Iss S1), p. 337-356

    Research output: Contribution to journalArticle

  56. Association of IGF1 and KDM5A polymorphisms with performance, fatness and carcass traits in chickens

    Boschiero, C., Jorge, E. C., Ninov, K., Nones, K., do Rosário, M. F., Coutinho, L. L., Ledur, M. C., Burt, D. W. & Moura, A. S. A. M. T., Feb 2013, In : Journal of applied genetics. 54, 1, p. 103-112 10 p.

    Research output: Contribution to journalArticle

  57. Development of a high density 600K SNP genotyping array for chicken

    Kranis, A., Gheyas, A. A., Boschiero, C., Turner, F., Yu, L., Smith, S., Talbot, R., Pirani, A., Brew, F., Kaiser, P., Hocking, P. M., Fife, M., Salmon, N., Fulton, J., Strom, T. M., Haberer, G., Weigend, S., Preisinger, R., Gholami, M., Qanbari, S. & 4 others, Simianer, H., Watson, K. A., Woolliams, J. A. & Burt, D. W., 1 Jan 2013, In : BMC Genomics. 14, 1, 59.

    Research output: Contribution to journalArticle

  58. A comparison of immune responses to avian influenza infection in ducks and chickens: a focus on the interferon-induced transmembrane (IFITM) proteins

    Smith, J., Yu, L., Paton, B., Gutowska, M., Webster, R. & Burt, D., 2013, National Avian Research Facility (NARF) opening meeting.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  59. Activation of Novel Molecular Circuits involved in Epigenetic Re-modelling in the Ovine Pars Tuberalis in Response to Long Photoperiods Revealed by RNA-seq

    Yu, L., Wood, S., Miedzinska, K., Paton, B., Dupre, S., McNeilly, A., Davis, J., Loudon, A. & Burt, D., 2013, XIII EBRS Congress in Munich, Germany, 18-22 August 2013.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  60. Bioinformatics Analysis to identify Molecular Circuits involved in Epigenetic Re-modelling in the Ovine Pars Tuberalis using Next Generation Sequencing data

    Yu, L., Wood, S., Miedzinska, K., Paton, B., Dupre, S., McNeilly, A., Davis, J., Loudon, A. & Burt, D., 2013, UK Genome Science Meeting 2013.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  61. Bioinformatics Technologies for Next Generation Sequencing Data in Animal Science Research

    Yu, L., Smith, J., Gheyas, A. & Burt, D., 2013, SULSA's 2013 Research Symposium .

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  62. Dynamic changes of the ovine pars tuberalis transcriptome in response to long photoperiods

    Wood, S. H., Yu, L., Miedzinska, K., Paton, B., Dupre, S. M., McNeilly, A., Davis, J. R. E., Burt, D. & Loudon, A. S. I., 2013.

    Research output: Contribution to conferencePaper

  63. Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data

    Kim, K-W., Burt, D. W., Kim, H. & Cho, S., 2013, In : Evolutionary bioinformatics. 9, p. 285-293 9 p.

    Research output: Contribution to journalArticle

  64. Mapping disease resistance genes in the chicken using the 620K SNP Chip

    Psifidi, A., Matika, O., Banos, G., Smith, A., Stevens, M., Burt, D. & Kaiser, P., 2013, p. 206-206. 1 p.

    Research output: Contribution to conferenceAbstract

  65. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

    Huang, Y., Burt, D., Li, Y., Chen, H., Zhang, Y., Qian, W., Kim, H., Gan, S., Zhao, Y., Li, J., Yi, K., Feng, H., Zhu, P., Li, B., Liu, Q., Fairley, S., Magor, K., Du, Z., Hu, X., Goodman, L. & 30 others, Tafer, H., Vignal, A., Lee, T., Kim, K-W., Sheng, Z., An, Y., Searle, S., Herrero, J., Groenen, M. A., Crooijmans, R. P., Faraut, T., Cai, Q., Webster, R., Aldridge, J., Warren, W. C., Bartschat, S., Kehr, S., Marz, M., Stadler, P., Smith, J., Kraus, R., Zhao, Y., Ren, L., Fei, J., Morisson, M., Kaiser, P., Griffin, D. K., Pitel, F., Wang, J. & Li, N., 2013, In : Nature Genetics. 45, 7, p. 776-U797

    Research output: Contribution to journalArticle

  66. eChickAtlas: An introduction to the database

    Wong, F., Welten, M. C. M., Anderson, C., Bain, A. A., Liu, J., Wicks, M., Pavlovska, G., Davey, M. G., Murphy, P., Davidson, D., Tickle, C. A., Stern, C. D., Baldock, R. A. & Burt, D. W., 2013, In : Genesis. 51, 5 (Sp Iss S1), p. 365-371

    Research output: Contribution to journalArticle

  67. 2012
  68. Identification of Melatonin and Photoperiodic regulated genes in Sheep pituitary using ISGC sheep genome assembly

    Yu, L., Dupre, S. M., Paton, B., Dalrymple, B., McWilliam, S., ALEXANDER, W. J. C., Miedzinska, K., Davis, J. R. E., McNeilly, A., Loudon, A. S. I. & Burt, D., Jul 2012, 33rd Conference of the International Society of Animal Genetics. Cairns, Australia

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  69. Npas4, an immediate early gene induced by melatonin in the sheep PT

    Dupre, S. M., ALEXANDER, W. J. C., Paton, B., Yu, L., Miedzinska, K., McNeilly, A., Burt, D. & Loudon, A. S. I., Jul 2012, British Society for Neuroendocrinology (BSN 2012) conference. Aberdeen, UK

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  70. Many quantitative trait loci for feather growth in an F broiler × layer cross collocate with body weight loci

    Hocking, P. M., Morrice, D. M., Law, A. S. & Burt, D. W., 1 Apr 2012, In : British Poultry Science. 53, 2, p. 162-167 6 p.

    Research output: Contribution to journalArticle

  71. Identification of Melatonin and Photoperiodic regulated genes in Sheep pituitary using ISGC sheep genome assembly

    Yu, L., Dupre, S. M., Paton, B., Dalrymple, B., McWilliam, S., ALEXANDER, W. J. C., Miedzinska, K., Davis, J. R. E., McNeilly, A., Loudon, A. S. I. & Burt, D., Mar 2012, Quantomics Barcelona meetings. Barcelona, Spain

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  72. A high resolution genome-wide scan for significant selective sweeps: an application to pooled sequence data in laying chickens

    Qanbari, S., Strom, T. M., Haberer, G., Weigend, S., Gheyas, A. A., Turner, F., Burt, D. W., Preisinger, R., Gianola, D. & Simianer, H., 2012, In : PLoS ONE. 7, 11, 12 p., e49525.

    Research output: Contribution to journalArticle

  73. Bone mineral density QTL at sexual maturity and end of lay

    Podisi, B. K., Knott, S. A., Dunn, I. C., Burt, D. W. & Hocking, P. M., 2012, In : British Poultry Science. 53, 6, p. 763-9 7 p.

    Research output: Contribution to journalArticle

  74. Characterisation of the chicken lung immune system in an infection model

    Schwarz, S., Ewers, C., Smith, J., Burt, D., Wieler, L. & Kaspers, B., 2012, p. 101.

    Research output: Contribution to conferenceAbstract

  75. Complex traits analysis of chicken growth using targeted genetical genomics

    Cabrera, C. P., Dunn, I. C., Fell, M., Wilson, P. W., Burt, D. W., Waddington, D., Talbot, R., Hocking, P. M., Law, A., Knott, S., Haley, C. S. & de Koning, D. J., 2012, In : Animal Genetics. 43, 2, p. 163-71 9 p.

    Research output: Contribution to journalArticle

  76. Development of High Density (600K) Chicken Genotyping Array

    Gheyas, A., Kranis, A., Boschiero, C., Turner, F., Yu, L., Pirani, A., Reynolds, L., Barts, J., Montgomery, J., Smith, S., Talbot, R., Kaiser, P., Hocking, P., Fulton, J. E., Strom, T., Haberer, G., Weigend, S., Preisinger, R., Simianer, H., Brew, F. & 3 others, Watson, K., Woolliams, J. & Burt, D., 2012, p. P0592.

    Research output: Contribution to conferenceAbstract

  77. Quantitative trait loci associated with chemical composition of the chicken carcass

    Nones, K., Ledur, M. C., Zanella, E. L., Klein, C., Pinto, L. F. B., Moura, A. S. A. M. T., Ruy, D. C., Baron, E. E., Ambo, M., Campos, R. L. R., Boschiero, C., Burt, D. W. & Coutinho, L. L., 2012, In : Animal Genetics. 43, 5, p. 570-6 7 p.

    Research output: Contribution to journalArticle

  78. Systemic virus distribution and host responses in brain and intestine of chickens infected with low pathogenic or high pathogenic avian influenza virus

    Post, J., Burt, D. W., Cornelissen, J. B. W. J., Broks, V., van Zoelen, D., Peeters, B. & Rebel, J. M. J., 2012, In : Virology Journal. 9, 1, p. - 14 p., 61.

    Research output: Contribution to journalArticle

  79. 2011
  80. Systems analysis of immune responses in Marek's disease virus-infected chickens identifies a gene involved in susceptibility and highlights a possible novel pathogenicity mechanism

    Smith, J., Sadeyen, J-R., Paton, I. R., Hocking, P. M., Salmon, N., Fife, M., Nair, V., Burt, D. W. & Kaiser, P., Nov 2011, In : Journal of Virology. 85, 21, p. 11146-11158 13 p.

    Research output: Contribution to journalArticle

  81. ChickATLAS: A three-dimensional atlas of gene expression during chick development

    Wong, F., Burt, D., Bain, A. & Davey, M., Aug 2011, p. 34 Abstract 23.

    Research output: Contribution to conferencePaper

  82. Technologies to identify Melatonin regulated genes in the Sheep Pars Tuberalis using Next Generation Transcriptome Sequencing

    Yu, L., Dupre, S. M., McNeilly, A., Loudon, A. S. I. & Burt, D., Aug 2011, XII Congress of the European Biological Rhythms Society. Oxford United Kingdom

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  83. QTL for percentage of carcass and carcass parts in a broiler x layer cross

    Baron, E. E., Moura, A. S. A. M. T., Ledur, M. C., Pinto, L. F. B., Boschiero, C., Ruy, D. C., Nones, K., Zanella, E. L., Rosario, M. F., Burt, D. W. & Coutinho, L. L., Apr 2011, In : Animal Genetics. 42, 2, p. 117-124 8 p.

    Research output: Contribution to journalArticle

  84. Cryptic patterning of avian skin confers a developmental facility for loss of neck feathering

    Mou, C., Pitel, F., Gourichon, D., Vignoles, F., Tzika, A., Tato, P., Yu, L., Burt, D. W., Bed'hom, B., Tixier-Boichard, M., Painter, K. J. & Headon, D. J., Mar 2011, In : PLoS Biology. 9, 3, e1001028.

    Research output: Contribution to journalArticle

  85. A three-dimensional atlas of gene expression during chick embryo development

    Liu, J., Anderson, C., Wong, F., Welten, M., Wicks, M., Bain, A., Davidson, D., Davey, M., Murphy, P., Baldock, R., Tickle, C., Burt, D. & Stern, C. D., 2011, p. 25 Abstract 5.

    Research output: Contribution to conferenceAbstract

  86. CASI [cell autonomous sex identity] and development of the sexual phenotype in birds

    Clinton, M., Zhao, D., Nandi, S., Yu, L., Burt, D., Sang, H. & McBride, D., 2011, p. 31 Abstract 17.

    Research output: Contribution to conferenceAbstract

  87. Detection and selection of SNPs from chicken whole genome sequencing for the design of high throughput genotyping arrays

    Gheyas, A., Boschiero, C., Turner, F., Krnais, A., Watson, K., Yu, L., Smith, J., Talbot, R., Kaiser, P., Hocking, P., Fulton, J. E., Strom, T. M., Haberer, G., Weigend, S., Preisinger, R., Fries, R., Qanbari, H., Simianer, H., Woolliams, J. A. & Burt, D. W., 2011, p. 38 Abstract 30.

    Research output: Contribution to conferenceAbstract

  88. Development of high density chicken genotyping array: 1. Detection of SNPs and criteria for SNP selection

    Boschiero, C., Gheyas, A. A., Kranis, A., Turner, F. S., Watson, K., Yu, L., Smith, S., Talbot, R., Kaiser, P., Hocking, P. M., Fulton, J. E., Strom, T. M., Haberer, G., Fries, H. R., Weigend, S., Preisinger, R., Qanbari, S., Simianer, H., Brew, F., Woolliams, J. A. & 1 others, Burt, D. W., 2011, p. 54. 1 p.

    Research output: Contribution to conferenceAbstract

  89. Development of high density chicken genotyping array: 1. Validation of SNPs for final array design

    Gheyas, A. A., Boschiero, C., Turner, F. S., Kranis, A., Watson, K., Yu, L., Smith, S., Talbot, R., Kaiser, P., Hocking, P. M., Fulton, J. E., Strom, T. M., Haberer, G., R., F. H., Weigend, S., Preisinger, R., Qanbari, S., Simianer, H., Brew, F., Woolliams, J. A. & 1 others, Burt, D. W., 2011, p. 56. 1 p.

    Research output: Contribution to conferenceAbstract

  90. Evolution of avian genomes

    Burt, D., 2011, p. 45 Abstract 42.

    Research output: Contribution to conferenceAbstract

  91. Evolutionary analysis of the CSF1R and its ligands in vertebrates

    Gutowska, M., Burt, D. W., Hume, D. A., Smith, J. & Paton, B., 2011, p. 45 Abstract 43.

    Research output: Contribution to conferenceAbstract

  92. From detection to array design: Exploring the characteristics of the chicken single nucleotide polymorphisms at different phases of their selection process

    Boscheiro, C., Gheyas, A. A., Kranis, A., Turner, F., Watson, K., Yu, L., R., S., Talbot, R., Kaiser, P., Hocking, P., Fulton, J. E., Brew, F., Strom, T. M., Haberer, G., Wiegand, S., Preisinger, R., Fries, R., Qanbari, H., Simianer, H., Woolliams, J. A. & 1 others, Burt, D. W., 2011, p. 46 Abstract 45.

    Research output: Contribution to conferenceAbstract

  93. Global variation in copy number variation in the chicken genome

    Huang, Y., Talbot, R., Downing, A., Bagnato, A. & Burt, D. W., 2011, p. 53 Abstract 58.

    Research output: Contribution to conferenceAbstract

  94. Mapping resistance to bacteria and viruses in the chicken

    Smith, J., Sadeyen, J. R., Paton, I. R., Fife, M. S., Howell, J., Salmon, N., Hocking, P. M., Jones, M. A., Stevens, M. P., Burt, D. W. & Kaiser, P., 2011, p. abstract W460.

    Research output: Contribution to conferenceAbstract

  95. Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolution

    Huang, Y. H., Temperley, N. D., Ren, L. M., Smith, J., Li, N. & Burt, D. W., 2011, In : BMC Evolutionary Biology. 11, 149, p. 1-17 17 p.

    Research output: Contribution to journalArticle

  96. Mpdz null allele in an avian model of retinal degeneration and mutations in human leber congenital amaurosis and retinitis pigmentosa

    Ali, M., Hocking, P. M., McKibbin, M., Finnegan, S., Shires, M., Poulter, J. A., Prescott, K., Booth, A., Raashid, Y., Jafri, H., Ruddle, J. B., Mackey, D. A., Jacobson, S. G., Toomes, C., Lester, D. H., Burt, D. W., Curry, W. J. & Inglehearn, C. F., 2011, In : Investigative Ophthalmology & Visual Science. 52, 10, p. 7432-7440 9 p.

    Research output: Contribution to journalArticle

  97. Next generation sequencing: current status and prospects

    Burt, D. W., 2011, p. 41-44. 4 p.

    Research output: Contribution to conferencePaper

  98. Overlap of quantitative trait loci for early growth rate, and for body weight and age at onset of sexual maturity in chickens

    Podisi, B. K., Knott, S. A., Dunn, I. C., Law, A. S., Burt, D. W. & Hocking, P. M., 2011, In : Reproduction. 141, 3, p. 381-389 9 p.

    Research output: Contribution to journalArticle

  99. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development

    Dunn, I. C., Paton, I. R., Clelland, A. K., Sebastian, S., Johnson, E. J., McTeir, L., Windsor, D., Sherman, A., Sang, H., Burt, D. W., Tickle, C. & Davey, M. G., 2011, In : Developmental Dynamics. 240, 5, p. 1163-72 10 p.

    Research output: Contribution to journalArticle

  100. The duck genome sequence and the evolution of avian genomes

    Burt, D. W., Huang, Y. H., Kim, H., Kim, T., Qian, W., Wang, J. & Li, N., 2011, p. abstract W468.

    Research output: Contribution to conferenceAbstract

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