Edinburgh Research Explorer

Prof Dave Burt

(Former employee or visitor)

  1. 2019
  2. Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds

    Woodcock, M., Gheyas, A., Mason, A., Nandi, S., Taylor, L., Sherman, A., Smith, J., Burt, D., Hawken, R. & McGrew, M., 1 Oct 2019, In : Proceedings of the National Academy of Sciences.

    Research output: Contribution to journalArticle

  3. The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response.

    Morris, K., Hindle, M., Boitard, S., Burt, D., Danner, A. F., Eory, L., Forrest, H. L., Gourichon, D., Gros, J., Gourichon, L., Hillier, L., Jaffredo, T., Khoury, H., Leterrier, C., Loudon, A., Mason, AS., Meddle, S., Minvielle, F., Minx, P., Pitel, F. & 8 others, Seiler, J. P., Shimmura, T., Tomlinson, C., Vignal, A., Webster, R. G., Yoshimura, T., Warren, W. C. & Smith, J., 13 Mar 2019, (bioRxiv).

    Research output: Working paper

  4. 2018
  5. Molecular mechanisms for the adaptive switching between the OAS/RNase L and OASL/RIG-I pathways in birds and mammals: Adaptive exchanging of the OAS/RNase L and OASL/RIG-I pathway

    Rong, E., Wang, X., Chen, H., Yang, C., Hu, J., Liu, W., Wang, Z., Chen, X., Zheng, H., Pu, J., Sun, H., Smith, J., Burt, D., Liu, J., Li, N. & Huang, Y., 20 Jun 2018, In : Frontiers in Immunology. 9, 1398.

    Research output: Contribution to journalArticle

  6. Population genomic data reveal genes related to important traits of quail

    Wu, Y., Zhang, Y., Hou, Z., Fan, G., Pi, J., Sun, S., Chen, J., Liu, H., Du, X., Shen, J., Hu, G., Chen, W., Pan, A., Yin, P., Chen, X., Pu, Y., Zhang, H., Liang, Z., Jian, J., Zhang, H. & 20 others, Wu, B., Sun, J., Chen, J., Tao, H., Yang, T., Xiao, H., Yang, H., Zheng, C., Bai, M., Fang, X., Burt, D. W., Wang, W., Li, Q., Xu, X., Li, C., Yang, H., Wang, J., Yang, N., Liu, X. & Du, J., 11 May 2018, In : GigaScience. 7, 5, giy049.

    Research output: Contribution to journalArticle

  7. Genome wide changes in DNA methylation mark the changing seasons in mammalian calendar cells

    Hindle, M., Wood, S., Mizoro, Y., Paton, I., Meddle, S., Loudon, A. & Burt, D., 2018, (Unpublished).

    Research output: Contribution to conferenceAbstract

  8. 2017
  9. Diurnal and photoperiodic changes in Thyrotrophin stimulating hormone β (TSHβ) expression, and associated regulation of deiodinase enzymes (DIO2, DIO3) in the female juvenile chicken hypothalamus

    Dunn, I. C., Wilson, P., Shi, Y., Burt, D. W., Loudon, A. S. I. & Sharp, P. J., Dec 2017, In : Journal of Neuroendocrinology. 29, 12, e12554.

    Research output: Contribution to journalArticle

  10. Mapping of leptin and its syntenic genes to chicken chromosome 1p

    Seroussi, E., Pitel, F., Leroux, S., Morisson, M., Bornelöv, S., Miyara, S., Yosefi, S., Cogburn, L. A., Burt, D. W., Anderson, L. & Friedman-Einat, M., 9 Aug 2017, In : BMC Genetics. 18, 1, p. 77

    Research output: Contribution to journalArticle

  11. Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human

    Kuo, R. I., Tseng, E., Eory, L., Paton, I. R., Archibald, A. L. & Burt, D. W., 24 Apr 2017, In : BMC Genomics. 18, 1, p. 323

    Research output: Contribution to journalArticle

  12. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

    Warren, W. C., Hillier, L. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V., Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 1 Jan 2017, In : G3. 7, 1, p. 109-117

    Research output: Contribution to journalArticle

  13. 2016
  14. Deciphering chicken fatness trait with integrative genetic and genomic approaches.

    Khoo, C. K., Gheyas, A., Kuo, R., Eory, L., Hocking, P. M. & Burt, D., Sep 2016, In : Journal of Animal Science. 94, Suppt. 4, p. 36-37 2 p.

    Research output: Contribution to journalMeeting abstract

  15. A new look at the LTR retrotransposon content of the chicken genome

    Mason, A. S., Fulton, J. E., Hocking, P. M. & Burt, D. W., 30 Aug 2016, In : BMC Genomics. 17, p. 688

    Research output: Contribution to journalArticle

  16. A strategy to discover new organizers identifies a putative heart organizer

    Anderson, C., Khan, M. A. F., Wong, F., Solovieva, T., Oliveira, N. M. M., Baldock, R. A., Tickle, C., Burt, D. W. & Stern, C. D., Aug 2016, In : Nature Communications. 7, p. 12656

    Research output: Contribution to journalArticle

  17. Novel insights into chromosome evolution in birds, archosaurs, and reptiles

    Farre, M., Narayan, J., Slavov, G. T., Damas, J., Auvil, L., Cai, L., Jarvis, E. D., Burt, D., Griffin, D. K. & Larkin, D. M., Aug 2016, In : Genome Biology and Evolution. 8, 8, p. 2442-2451

    Research output: Contribution to journalLetter

  18. Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium

    Pengelly, R. J., Gheyas, A., Kuo, R., Mossotto, E., Seaby, E. G., Burt, D., Ennis, S. & Collins, A., 6 Jul 2016, In : Heredity. 117, 5, p. 375-382

    Research output: Contribution to journalArticle

  19. Leukocyte protein Trojan, as a candidate for apoptotic regulatory role

    Petrov, P., Syrjanen, R., Uchida, T., Burt, D. & Vainio, O., May 2016, In : Scandinavian Journal of Immunology. 83, 5, p. 353-353 1 p.

    Research output: Contribution to journalMeeting abstract

  20. Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross

    Moura, A. S. A. M. T., Ledur, M. C., Boschiero, C., Nones, K., Pinto, L. F. B., Jaenisch, F. R. F., Burt, D. W. & Coutinho, L. L., May 2016, In : Journal of applied genetics. 57, 2, p. 215-224

    Research output: Contribution to journalArticle

  21. Animal genomics and infectious disease resistance in poultry

    Smith, J., Gheyas, A. & Burt, D. W., 1 Apr 2016, In : Revue scientifique et technique-Office international des epizooties. 35, 1, p. 105-19 15 p.

    Research output: Contribution to journalLiterature review

  22. 2015
  23. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

    The FAANG Consortium, 1 Dec 2015, In : Genome Biology. 16, 1, 57.

    Research output: Contribution to journalArticle

  24. Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals

    Wood, S. H., Christian, H. C., Miedzinska, K., Saer, B. R. C., Johnson, M., Paton, B., Yu, L., Mcneilly, J., Davis, J. R. E., McNeilly, A. S., Burt, D. & Loudon, A. S. I., 19 Oct 2015, In : Current Biology. 25, 20, p. 2651–2662

    Research output: Contribution to journalArticle

  25. Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken

    Wragg, D., Mason, A. S., Yu, L., Kuo, R., Lawal, R. A., Desta, T. T., Mwacharo, J. M., Cho, C-Y., Kemp, S., Burt, D. W. & Hanotte, O., 14 Oct 2015, In : BMC Genomics. 16, 1, p. 784

    Research output: Contribution to journalArticle

  26. The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds

    Smith, J., Sadeyen, J-R., Cavanagh, D., Kaiser, P. & Burt, D. W., 9 Oct 2015, In : BMC Veterinary Research. 11, 1, 256.

    Research output: Contribution to journalArticle

  27. Evolution of the avian β-defensin and cathelicidin genes

    Cheng, Y., Prickett, M. D., Gutowska, M., Kuo, R., Belov, K. & Burt, D. W., 15 Sep 2015, In : BMC Evolutionary Biology. 15, 1, p. 188

    Research output: Contribution to journalArticle

  28. Transcriptomic Profiling of Virus-Host Cell Interactions following Chicken Anaemia Virus (CAV) Infection in an In Vivo Model

    Giotis, E. S., Rothwell, L., Scott, A., Hu, T., Talbot, R., Todd, D., Burt, D. W., Glass, E. J. & Kaiser, P., 5 Aug 2015, In : PLoS ONE. 10, 8, e0134866.

    Research output: Contribution to journalArticle

  29. Third Report on Chicken Genes and Chromosomes 2015

    Schmid, M., Smith, J., Burt, D. W., Aken, B. L., Antin, P. B., Archibald, A. L., Ashwell, C., Blackshear, P. J., Boschiero, C., Brown, C. T., Burgess, S. C., Cheng, H. H., Chow, W., Coble, D. J., Cooksey, A., Crooijmans, R. P. M. A., Damas, J., Davis, R. V. N., De Koning, D., Delany, M. E. & 84 others, Derrien, T., Desta, T. T., Dunn, I. C., Dunn, M., Ellegren, H., Eory, L., Erb, I., Farre, M., Fasold, M., Fleming, D., Flicek, P., Fowler, K. E., Fresard, L., Froman, D. P., Garceau, V., Gardner, P. P., Gheyas, A. A., Griffin, D. K., Groenen, M. A. M., Haaf, T., Hanotte, O., Hart, A., Hasler, J., Hedges, S. B., Hertel, J., Howe, K., Hubbard, A., Hume, D. A., Kaiser, P., Kedra, D., Kemp, S., Klopp, C., Kniel, K. E., Kuo, R., Lagarrigue, S., Lamont, S. J., Larkin, D. M., Lawal, R. A., Markland, S. M., Mccarthy, F., Mccormack, H. A., Mcpherson, M. C., Motegi, A., Muljo, S. A., Munsterberg, A., Nag, R., Nanda, I., Neuberger, M., Nitsche, A., Notredame, C., Noyes, H., O''connor, R., O''hare, E. A., Oler, A. J., Ommeh, S. C., Pais, H., Persia, M., Pitel, F., Preeyanon, L., Prieto Barja, P., Pritchett, E. M., Rhoads, D. D., Robinson, C. M., Romanov, M. N., Rothschild, M., Roux, P., Schmidt, C. J., Schneider, A., Schwartz, M., Searle, S. M., Skinner, M. A., Smith, C. A., Stadler, P. F., Steeves, T. E., Steinlein, C., Sun, L., Takata, M., Ulitsky, I., Wang, Q., Wang, Y., Warren, W. C., Wood, J. M. D., Wragg, D. & Zhou, H., Aug 2015, In : Cytogenetic and Genome Research. 145, 2, p. 78-179

    Research output: Contribution to journalArticle

  30. Functional classification of 15 million SNPs detected from diverse chicken populations

    Gheyas, A. A., Boschiero, C., Eory, L., Ralph, H., Kuo, R., Woolliams, J. A. & Burt, D. W., 29 Apr 2015, In : DNA Research. 22, 3, p. 205-217

    Research output: Contribution to journalArticle

  31. Characterization of the avian trojan gene family reveals contrasting evolutionary constraints

    Petrov, P., Syrjänen, R., Smith, J., Gutowska, M. W., Uchida, T., Vainio, O. & Burt, D. W., 24 Mar 2015, In : PLoS ONE. 10, 3, p. e0121672

    Research output: Contribution to journalArticle

  32. Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus

    Vijayakumar, P., Mishra, A., Ranaware, P. B., Kolte, A. P., Kulkarni, D. D., Burt, D. W. & Raut, A. A., 15 Mar 2015, In : Gene. 559, 1, p. 77-85

    Research output: Contribution to journalArticle

  33. Analysis of the early immune response to infection by Infectious Bursal Disease Virus (IBDV) in chickens differing in their resistance to the disease

    Smith, J., Sadeyen, J-R., Butter, C., Kaiser, P. & Burt, D. W., Mar 2015, In : Journal of Virology. 89, 5, p. 2469-2482

    Research output: Contribution to journalArticle

  34. SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition

    Godoy, T. F., Moreira, G. C. M., Boschiero, C., Gheyas, A. A., Gasparin, G., Paduan, M., Andrade, S. C. S., Montenegro, H., Burt, D. W., Ledur, M. C. & Coutinho, L. L., 18 Feb 2015, In : Animal Genetics. 46, 2, p. 158–163

    Research output: Contribution to journalArticle

  35. Phylogenomic analyses data of the avian phylogenomics project

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Alfaro-Núñez, A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 8 others, Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P., Zhang, G. & Avian Phylogenomics Consortium, 12 Feb 2015, In : GigaScience. 4, p. 4

    Research output: Contribution to journalArticle

  36. Avianbase: a community resource for bird genomics

    Eory, L., Gilbert, M. T. P., Li, C., Li, B., Archibald, A., Aken, B. L., Zhang, G., Jarvis, E., Flicek, P. & Burt, D. W., 29 Jan 2015, In : Genome Biology. 16, 1, 21.

    Research output: Contribution to journalArticle

  37. Cetaceans evolution: insights from the genome sequences of common minke whales

    Park, J. Y., An, Y-R., Kanda, N., An, C-M., An, H. S., Kang, J-H., Kim, E. M., An, D-H., Jung, H., Joung, M., Park, M. H., Yoon, S. H., Lee, B-Y., Lee, T., Kim, K-W., Park, W. C., Shin, D. H., Lee, Y. S., Kim, J., Kwak, W. & 7 others, Kim, H. J., Kwon, Y-J., Moon, S., Kim, Y., Burt, D. W., Cho, S. & Kim, H., 22 Jan 2015, In : BMC Genomics. 16, 8 p., 13.

    Research output: Contribution to journalArticle

  38. Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens

    Moreira, G. C. M., Godoy, T. F., Boschiero, C., Gheyas, A., Gasparin, G., Andrade, S. C. S., Paduan, M., Montenegro, H., Burt, D. W., Ledur, M. C. & Coutinho, L. L., Jan 2015, In : Animal Genetics. 46, 2, p. 141-147

    Research output: Contribution to journalArticle

  39. Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes

    Boschiero, C., Gheyas, A. A., Ralph, H. K., Eory, L., Paton, B., Kuo, R., Fulton, J., Preisinger, R., Kaiser, P. & Burt, D. W., 2015, In : BMC Genomics. 16, 1, 562.

    Research output: Contribution to journalArticle

  40. 2014
  41. Comparative genomics reveals insights into avian genome evolution and adaptation

    Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 31 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., da Fonseca, R. R., Alfaro-Núñez, A., Schubert, M., Orlando, L., Mourier, T., Burt, D. W., Avian Genome Consortium & Smith, J., 12 Dec 2014, In : Science. 346, 6215, p. 1311-20 10 p.

    Research output: Contribution to journalArticle

  42. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

    Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M. T. P., Yang, H., Wang, J., Lambert, D. M., Wang, J. & Zhang, G., 12 Dec 2014, In : GigaScience. 3, 1, p. 27

    Research output: Contribution to journalArticle

  43. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldon, T., Capella-Gutierrez, S., Huerta-Cepas, J., Rekepalli, B., Munch, K., Schierup, M., Lindow, B., Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, M. F., Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Cruz Schneider, M. P., Prosdocimi, F., Samaniego, J. A., Vargas Velazquez, A. M., Alfaro-Nunez, A., Campos, P. F., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldsa, J., Orlando, L., Barker, F. K., Jonsson, K. A., Johnson, W., Koepfli, K-P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, C., Willerslev, E., Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alstrom, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P. & Zhang, G., 12 Dec 2014, In : Science. 346, 6215, p. 1320-1331 12 p.

    Research output: Contribution to journalArticle

  44. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

    Romanov, M. N., Farre, M., Lithgow, P. E., Fowler, K. E., Skinner, B. M., O'Connor, R., Fonseka, G., Backstrom, N., Matsuda, Y., Nishida, C., Houde, P., Jarvis, E. D., Ellegren, H., Burt, D. W., Larkin, D. M. & Griffin, D. K., 11 Dec 2014, In : BMC Genomics. 15, 17 p., 1060.

    Research output: Contribution to journalArticle

  45. Identification of molecular circuits involved in epigenetic re-modelling in the ovine pars tuberalis using next generation sequencing data

    Yu, L., Wood, S. H., Miedzinska, K., Paton, B., McNeilly, A., Loudon, A. & Burt, D., 2 Aug 2014, 34th International Society Animal Genetic Conference - Xi'An China.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

    Olivera-Martinez, I., Schurch, N., Li, R. A., Song, J., Halley, P. A., Das, R. M., Burt, D. W., Barton, G. J. & Storey, K. G., Aug 2014, In : Development. 141, 16, p. 3266-76 11 p.

    Research output: Contribution to journalArticle

  47. Clocks For All Seasons: Unravelling the Genetic Circadian and Interval Timing Mechanisms in the Mammalian Hypothalamus and Pituitary

    Wood, S., Miedzinska, K., McNeilly, A., Christian, H., Davis, J., Yu, L., Saer, B., Burt, D. & Loudon, A., 14 Jun 2014, The 2014 Meeting of the Society for Research on Biological Rhythms.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  48. All creatures great and small: 10 years on

    Griffen, D. & Burt, D., 2014, In : Chromosome Research. 22, 1, p. 1-6

    Research output: Contribution to journalArticle

  49. Trojan, a Possible Regulator of Apoptosis, Belongs to a Novel Protein Family

    Petrov, P., Burt, D., Syrjanen, R., Uchida, T. & Vainio, O., 2014, In : Scandinavian Journal of Immunology. 79, 6, p. 436 1 p.

    Research output: Contribution to journalMeeting abstract

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