Edinburgh Research Explorer

Dr Kenneth Baillie

Snr. Clinical Research Fellow in Anaesthesia & Critical Care

  1. A gene expression atlas of the domestic pig

    Freeman, T. C., Ivens, A., Baillie, J. K., Beraldi, D., Barnett, M. W., Dorward, D., Downing, A., Fairbairn, L., Kapetanovic, R., Raza, S., Tomoiu, A., Alberio, R., Wu, C., Su, A. I., Summers, K. M., Tuggle, C. K., Archibald, A. L. & Hume, D. A., 15 Nov 2012, In : BMC Biology. 10, n/a, 21 p., 90.

    Research output: Contribution to journalArticle

  2. A promoter-level mammalian expression atlas

    Forrest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jorgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 32 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Alam, I., Albanese, D., Altschuler, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Fisher, M. E., Ha, T. J., Joshi, A., Meynert, A., Prendergast, J. G. D., Summers, K. M., Freeman, T. C., Taylor, M. S., Hume, D. A., FANTOM Consortium & RIKEN PMI CLST DGT, 26 Mar 2014, In : Nature. 507, 7493, p. 462-+ 22 p.

    Research output: Contribution to journalArticle

  3. An atlas of active enhancers across human cell types and tissues

    Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 31 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., FANTOM Consortium, Young, R. S., Fisher, M. E., Meynert, A., Prendergast, J. G. D. & Taylor, M. S., 26 Mar 2014, In : Nature. 507, 7493, p. 455-61 7 p.

    Research output: Contribution to journalArticle

  4. An evidence-based framework for priority clinical research questions for COVID-19

    Harris, C., Carson, G., Baillie, K., Horby, P. & Nair, H., 31 Mar 2020, In : Journal of Global Health. 10, 1

    Research output: Contribution to journalArticle

  5. An expression atlas of human primary cells: inference of gene function from coexpression networks

    Mabbott, N. A., Baillie, J. K., Brown, H., Freeman, T. C. & Hume, D. A., 20 Sep 2013, In : BMC Genomics. 14, 1, 13 p., 632.

    Research output: Contribution to journalArticle

  6. An updated systematic review of the role of host genetics in susceptibility to influenza

    Horby, P., Nguyen, N. Y., Dunstan, S. J. & Baillie, J. K., Sep 2013, In : Influenza and other respiratory viruses. 7 Suppl 2, p. 37-41 5 p.

    Research output: Contribution to journalLiterature review

  7. Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

    Baillie, J. K., Arner, E., Daub, C., De Hoon, M., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., The FANTOM Consortium, Faulkner, G. J., Wells, C. A., Rehli, M., Pavli, P., Summers, K. M. & Hume, D. A., 6 Mar 2017, In : PLoS Genetics. 13, 3, e1006641.

    Research output: Contribution to journalArticle

  8. Antiviral combinations for severe influenza

    Dunning, J., Baillie, J. K., Cao, B., Hayden, F. G. & International Severe Acute Respiratory and Emerging Infection Consortium (ISARIC), Dec 2014, In : The Lancet Infectious Diseases. 14, 12, p. 1259-70 12 p.

    Research output: Contribution to journalArticle

  9. Cancer datasets and the SARS-CoV-2 pandemic: establishing principles for collaboration

    Palmieri, C., Palmer, D., Openshaw, P. J., Semple, M. G., Turtle, L. & Baillie, K., 25 May 2020, In : ESMO Open. 5, 3

    Research output: Contribution to journalLetter

  10. Change in plasma vascular endothelial growth factor during onset and recovery from acute mountain sickness

    Dorward, D., Roger Thompson, A. A., Kenneth Baillie, J., MacDougall, M. & Hirani, N., 1 Mar 2007, In : Respiratory Medicine. 101, 3, p. 587-594

    Research output: Contribution to journalArticle

  11. Clinical evidence does not support corticosteroid treatment for 2019-nCoV lung injury

    Russell, C. D., Millar, J. E. & Baillie, J. K., 7 Feb 2020, In : The Lancet. 395, 10223, p. 473-475 3 p.

    Research output: Contribution to journalComment/debate

  12. Combined Mesenchymal Stromal Cell Therapy and ECMO in ARDS: A Controlled Experimental Study in Sheep

    Combining Extracorporeal Life Support and Cell Therapy in Critical Illness (CELTIC) investigators. & Millar, J., 15 Apr 2020, In : American Journal of Respiratory and Critical Care Medicine.

    Research output: Contribution to journalArticle

  13. Complete genome sequence of methicillin-sensitive Staphylococcus aureus containing a heterogeneic staphylococcal cassette chromosome element

    Li, D., Chu, Y., Ren, L., Li, X., Yuan, L., Kang, Y., Zhang, W., Yang, Y., Wang, X., Baillie, J. K., Yu, J. & Gao, Z., Mar 2013, In : Science China Life Sciences. 56, 3, p. 268-274 7 p.

    Research output: Contribution to journalArticle

  14. Comprehensive characterisation of transcriptional activity during influenza A virus infection reveals biases in cap-snatching of host RNA sequences.

    Clohisey, S., Parkinson, N., Wang, B., Bertin, N., Wise, H., Tomoiu, A., FANTOM consortium, T., Summers, K. M., Hendry, R. W., Carninci, P., Forrest, A. A., Hayashizaki, Y., Digard, P., Hume, D. & Baillie, K., 11 Mar 2020, In : Journal of Virology.

    Research output: Contribution to journalArticle

  15. Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

    Schroder, K., Irvine, K. M., Taylor, M. S., Bokil, N. J., Le Cao, K-A., Masterman, K-A., Labzin, L. I., Semple, C. A., Kapetanovic, R., Fairbairn, L., Akalin, A., Faulkner, G. J., Baillie, J. K., Gongora, M., Daub, C. O., Kawaji, H., McLachlan, G. J., Goldman, N., Grimmond, S. M., Carninci, P. & 5 others, Suzuki, H., Hayashizaki, Y., Lenhard, B., Hume, D. A. & Sweet, M. J., 17 Apr 2012, In : Proceedings of the National Academy of Sciences. 109, 16, p. E944-E953

    Research output: Contribution to journalArticle

  16. Correction to: Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients

    Chang, E. M., Bretherick, A., Drummond, G. B. & Baillie, J. K., 10 Jul 2020, In : Intensive care medicine experimental . 8, 1, p. 30

    Research output: Contribution to journalArticle

  17. Deciding authorship order

    Brennan, P. M., Jubb, A., Baillie, J. K. & Partridge, R. W., 16 Dec 2013, In : BMJ. 347, 3 p., 7182.

    Research output: Contribution to journalEditorial

  18. Developing Novel Host-Based Therapies Targeting Microbicidal Responses in Macrophages and Neutrophils to Combat Bacterial Antimicrobial Resistance

    Watson, K., Russell, C. D., Baillie, J. K., Dhaliwal, K., Fitzgerald, J. R., Mitchell, T. J., Simpson, A. J., Renshaw, S. A. & Dockrell, D. H., 5 Jun 2020, In : Frontiers in Immunology. 11, p. 786

    Research output: Contribution to journalReview article

  19. Dexamethasone in Hospitalized Patients with Covid-19 - Preliminary Report

    RECOVERY Collaborative Group, 17 Jul 2020, In : New England Journal of Medicine.

    Research output: Contribution to journalArticle

  20. Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

    Shukla, R., Upton, K. R., Munoz-Lopez, M., Gerhardt, D. J., Fisher, M. E., Thu Nguyen, N. V., Brennan, P. M., Baillie, J. K., Collino, A., Ghisletti, S., Sinha, S., Iannelli, F., Radaelli, E., Dos Santos, A., Rapoud, D., Guettier, C., Samuel, D., Natoli, G., Carninci, P., Ciccarelli, F. D. & 3 others, Garcia-Perez, J., Faivre, J. & Faulkner, G. J., 28 Mar 2013, In : Cell. 153, 1, p. 101-111 11 p.

    Research output: Contribution to journalArticle

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