Edinburgh Research Explorer

Kenneth Baillie

Snr. Clinical Research Fellow in Anaesthesia & Critical Care

  1. 2020
  2. Outcomes of COVID-19 related hospitalization among people with HIV in the ISARIC WHO Clinical Characterization Protocol (UK): a prospective observational study

    Geretti, A. M., Stockdale, A. J., Kelly, S. H., Cevik, M., Collins, S., Waters, L., Villa, G., Docherty, A., Harrison, E. M., Turtle, L., Openshaw, P. J. M., Baillie, J. K., Sabin, C. A. & Semple, M. G., 23 Oct 2020, In : Clinical Infectious Diseases.

    Research output: Contribution to journalArticle

  3. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism

    Moore, S. C., Penrice-Randal, R., Alruwaili, M., Randle, N., Armstrong, S., Hartley, C., Haldenby, S., Dong, X., Alrezaihi, A., Almsaud, M., Bentley, E., Clark, J., García-Dorival, I., Gilmore, P., Han, X., Jones, B., Luu, L., Sharma, P., Shawli, G., Sun, Y. & 26 others, Zhao, Q., Pullan, S. T., Carter, D. P., Bewley, K., Dunning, J., Zhou, E-M., Solomon, T., Beadsworth, M., Cruise, J., Crook, D. W., Matthews, D. A., Davidson, A. D., Mahmood, Z., Aljabr, W., Druce, J., Vipond, R., Ng, L., Renia, L., Openshaw, P. J. M., Baillie, J. K., Carroll, M. W., Stewart, J., Darby, A., Semple, M., Turtle, L. & Hiscox, J. A., 14 Oct 2020, In : Viruses. 12, 10

    Research output: Contribution to journalArticle

  4. Outcome of Hospitalization for COVID-19 in Patients with Interstitial Lung Disease: An International Multicenter Study

    ISARIC4C Investigators, 2 Oct 2020, In : American Journal of Respiratory and Critical Care Medicine.

    Research output: Contribution to journalArticle

  5. Letter to the Editor: Response to Luke Fletcher and Philip Peyton regarding "Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients"

    Chang, E. M., Bretherick, A., Drummond, G. B. & Baillie, J. K., 1 Oct 2020, In : Intensive care medicine experimental . 8, 1, p. 57

    Research output: Contribution to journalLetter

  6. Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score

    Knight, S. R., Ho, A., Pius, R., Buchan, I., Carson, G., Drake, T. M., Dunning, J., Fairfield, C. J., Gamble, C., Green, C. A., Gupta, R., Halpin, S., Hardwick, H. E., Holden, K. A., Horby, P. W., Jackson, C., Mclean, K. A., Merson, L., Nguyen-van-tam, J. S., Norman, L. & 15 others, Noursadeghi, M., Olliaro, P. L., Pritchard, M. G., Russell, C. D., Shaw, C. A., Sheikh, A., Solomon, T., Sudlow, C., Swann, O. V., Turtle, L. C., Openshaw, P. J., Baillie, J. K., Semple, M. G., Docherty, A. B. & Harrison, E. M., 9 Sep 2020, In : British Medical Journal (BMJ). p. m3339

    Research output: Contribution to journalArticle

  7. Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study

    Swann, O. V., Holden, K. A., Turtle, L., Pollock, L., Fairfield, C. J., Drake, T. M., Seth, S., Egan, C., Hardwick, H. E., Halpin, S., Girvan, M., Donohue, C., Pritchard, M., Patel, L. B., Ladhani, S., Sigfrid, L., Sinha, I. P., Olliaro, P. L., Nguyen-van-tam, J. S., Horby, P. W. & 8 others, Merson, L., Carson, G., Dunning, J., Openshaw, P. J. M., Baillie, J. K., Harrison, E. M., Docherty, A. B. & Semple, M. G., 27 Aug 2020, In : British Medical Journal (BMJ). p. m3249

    Research output: Contribution to journalArticle

  8. RECOVERY- Respiratory Support: Respiratory Strategies for patients with suspected or proven COVID-19 respiratory failure; Continuous Positive Airway Pressure, High-flow Nasal Oxygen, and standard care: A structured summary of a study protocol for a randomised controlled trial

    Perkins, G. D., Couper, K., Connolly, B., Baillie, J. K., Bradley, J. M., Dark, P., De Soyza, A., Gorman, E., Gray, A., Hamilton, L., Hart, N., Ji, C., Lall, R., McGowan, N., Regan, S., Simonds, A. K., Skilton, E., Stallard, N., Stimpson, E., Yeung, J. & 1 others, McAuley, D. F., 29 Jul 2020, In : Trials. 21, 1, p. 687

    Research output: Contribution to journalArticle

  9. Functional annotation of human long noncoding RNAs via molecular phenotyping

    Ramilowski, J. A., Yip, C. W., Agrawal, S., Chang, J-C., Ciani, Y., Kulakovskiy, I. V., Mendez, M., Ooi, J. L. C., Ouyang, J. F., Parkinson, N., Petri, A., Roos, L., Severin, J., Yasuzawa, K., Abugessaisa, I., Akalin, A., Antonov, I. V., Arner, E., Bonetti, A., Bono, H. & 96 others, Borsari, B., Brombacher, F., Cameron, C. J. F., Cannistraci, C. V., Cardenas, R., Cardon, M., Chang, H., Dostie, J., Ducoli, L., Favorov, A., Fort, A., Garrido, D., Gil, N., Gimenez, J., Guler, R., Handoko, L., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, K., Hayatsu, N., Heutink, P., Hirose, T., Imada, E. L., Itoh, M., Kaczkowski, B., Kanhere, A., Kawabata, E., Kawaji, H., Kawashima, T., Kelly, S. T., Kojima, M., Kondo, N., Koseki, H., Kouno, T., Kratz, A., Kurowska-Stolarska, M., Kwon, A. T. J., Leek, J., Lennartsson, A., Lizio, M., López-Redondo, F., Luginbühl, J., Maeda, S., Makeev, V. J., Marchionni, L., Medvedeva, Y. A., Minoda, A., Müller, F., Muñoz-Aguirre, M., Murata, M., Nishiyori, H., Nitta, K. R., Noguchi, S., Noro, Y., Nurtdinov, R., Okazaki, Y., Orlando, V., Paquette, D., Parr, C. J. C., Rackham, O. J. L., Rizzu, P., Sánchez Martinez, D. F., Sandelin, A., Sanjana, P., Semple, C. A. M., Shibayama, Y., Sivaraman, D. M., Suzuki, T., Szumowski, S. C., Tagami, M., Taylor, M. S., Terao, C., Thodberg, M., Thongjuea, S., Tripathi, V., Ulitsky, I., Verardo, R., Vorontsov, I. E., Yamamoto, C., Young, R. S., Baillie, J. K., Forrest, A. R. R., Guigó, R., Hoffman, M. M., Hon, C. C., Kasukawa, T., Kauppinen, S., Kere, J., Lenhard, B., Schneider, C., Suzuki, H., Yagi, K., de Hoon, M. J. L., Shin, J. W. & Carninci, P., 27 Jul 2020, In : Genome Research.

    Research output: Contribution to journalArticle

  10. Dexamethasone in Hospitalized Patients with Covid-19 - Preliminary Report

    RECOVERY Collaborative Group, 17 Jul 2020, In : New England Journal of Medicine.

    Research output: Contribution to journalArticle

  11. Correction to: Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients

    Chang, E. M., Bretherick, A., Drummond, G. B. & Baillie, J. K., 10 Jul 2020, In : Intensive care medicine experimental . 8, 1, p. 30

    Research output: Contribution to journalArticle

  12. Using imaging to combat a pandemic: rationale for developing the UK National COVID-19 Chest Imaging Database

    Jacob, J., Alexander, D., Baillie, J. K., Berka, R., Bertolli, O., Blackwood, J., Buchan, I., Bloomfield, C., Cushnan, D., Docherty, A., Edey, A., Favaro, A., Gleeson, F., Halling-Brown, M., Hare, S., Jefferson, E., Johnstone, A., Kirby, M., Mcstay, R., Nair, A. & 11 others, Openshaw, P. J. M., Parker, G., Reilly, G., Robinson, G., Roditi, G., Rodrigues, J. C. L., Sebire, N., Semple, M. G., Sudlow, C., Woznitza, N. & Joshi, I., 2 Jul 2020, In : European Respiratory Journal.

    Research output: Contribution to journalArticle

  13. Hybrid Gene Origination Creates Human-Virus Chimeric Protein During Infection

    Yuin Ho, J. S., Angel, M., Ma, Y., Sloan, E., Wang, G., Martinez-Romero, C., Alenquer, M., Roudko, V., Chung, L., Zheng, S., Chang, M., Fstkchyan, Y., Clohisey, S., Dinan, A. M., Gibbs, J., Gifford, R., Shen, R., Gu, Q., Irigoyen, N., Campisi, L. & 34 others, Huang, C., Zhao, N., Jones, J., van Knippenberg, I., Zhu, Z., Moshkina, N., Meyer, L., Noel, J., Peralta, Z., Rezelji, V., Kaake, R., Rosenberg, B., Wang, B., Wei, J., Paessler, S., Wise, H., Johnson, J., Vannini, A., Amorim, M. J., Baillie, K., Miraldi, E. R., Benner, C., Brierley, I., Digard, P., Luksza, M., Firth, A. E., Krogan, N. J., Greenbaum, B. D., MacLeod, M. K., van Bakel, H., García-Sastre, A., Yewdell, J. W., Hutchinson, E. & Marrazi, I., 18 Jun 2020, In : Cell.

    Research output: Contribution to journalArticle

  14. Developing Novel Host-Based Therapies Targeting Microbicidal Responses in Macrophages and Neutrophils to Combat Bacterial Antimicrobial Resistance

    Watson, K., Russell, C. D., Baillie, J. K., Dhaliwal, K., Fitzgerald, J. R., Mitchell, T. J., Simpson, A. J., Renshaw, S. A. & Dockrell, D. H., 5 Jun 2020, In : Frontiers in Immunology. 11, p. 786

    Research output: Contribution to journalReview article

  15. Molecular patterns in acute pancreatitis reflect generalisable endotypes of the host response to systemic injury in humans

    Neyton, L. P. A., Zheng, X., Skouras, C., Doeschl-Wilson, A., Gutmann, M., Uings, I. J., Rao, F. V., Nicolas, A., Marshall, C., Wilson, L-M., Baillie, K. & Mole, D., 2 Jun 2020, In : Annals of Surgery.

    Research output: Contribution to journalArticle

  16. Cancer datasets and the SARS-CoV-2 pandemic: establishing principles for collaboration

    Palmieri, C., Palmer, D., Openshaw, P. J., Semple, M. G., Turtle, L. & Baillie, K., 25 May 2020, In : ESMO Open. 5, 3

    Research output: Contribution to journalLetter

  17. Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study

    Docherty, A., Harrison, E., Green, C. A., Hardwick, H. E., Pius, R., Norman, L., Holden, K. A., Read, J. M., Dondelinger, F., Carson, G., Merson, L., Lee, J., Plotkin, D., Sigfrid, E., Halpin, S., Jackson, C., Gamble, C., Horby, P. W., Nguyen-Van-Tam, J. S., Ho, A. & 5 others, Russell, C. D., Dunning, J., Openshaw, P. J. M., Baillie, K. & Semple, M. G., 22 May 2020, In : British Medical Journal (BMJ).

    Research output: Contribution to journalReview article

  18. Combined Mesenchymal Stromal Cell Therapy and ECMO in ARDS: A Controlled Experimental Study in Sheep

    Combining Extracorporeal Life Support and Cell Therapy in Critical Illness (CELTIC) investigators. & Millar, J., 15 Apr 2020, In : American Journal of Respiratory and Critical Care Medicine.

    Research output: Contribution to journalArticle

  19. An evidence-based framework for priority clinical research questions for COVID-19

    Harris, C., Carson, G., Baillie, K., Horby, P. & Nair, H., 31 Mar 2020, In : Journal of Global Health. 10, 1

    Research output: Contribution to journalArticle

  20. Comprehensive characterisation of transcriptional activity during influenza A virus infection reveals biases in cap-snatching of host RNA sequences.

    Clohisey, S., Parkinson, N., Wang, B., Bertin, N., Wise, H., Tomoiu, A., FANTOM consortium, T., Summers, K. M., Hendry, R. W., Carninci, P., Forrest, A. A., Hayashizaki, Y., Digard, P., Hume, D. & Baillie, K., 11 Mar 2020, In : Journal of Virology.

    Research output: Contribution to journalArticle

  21. Clinical evidence does not support corticosteroid treatment for 2019-nCoV lung injury

    Russell, C. D., Millar, J. E. & Baillie, J. K., 7 Feb 2020, In : The Lancet. 395, 10223, p. 473-475 3 p.

    Research output: Contribution to journalComment/debate

  22. Genome-wide CRISPR screen Identifies Host Dependency Factors for Influenza A Virus Infection

    Li, B., Clohisey, S. M., Chia, B. S., Wang, B., Cui, A., Eisenhaure, T., Schweitzer, L. D., Hoover, P., Parkinson, N. J., Nachshon, A., Smith, N., Regan, T., Farr, D., Gutmann, M. U., Bukhari, S. I., Law, A., Sangesland, M., Gat-viks, I., Digard, P., Vasudevan, S. & 5 others, Lingwood, D., Dockrell, D. H., Doench, J. G., Baillie, J. K. & Hacohen, N., 9 Jan 2020, In : Nature Communications. 11, 1

    Research output: Contribution to journalArticle

  23. 2019
  24. Hypoxia modulates platelet purinergic signalling pathways

    Paterson, G. G., Young, J. M., Willson, J. A., Graham, C. J., Dru, R. C., Lee, E. W., Torpey, G. S., Walmsley, S., Chan, M. V., Warner, T. D., Baillie, K. & Roger Thompson, A. A., 13 Dec 2019, In : Thrombosis and Haemostasis.

    Research output: Contribution to journalArticle

  25. The effect of dexmedetomidine and clonidine on the inflammatory response in critical illness: a systematic review of animal and human studies

    Flanders, C. A., Rocke, A. S., Edwardson, S. A., Baillie, J. K. & Walsh, T. S., 11 Dec 2019, In : Critical Care. 23, 1, p. 402

    Research output: Contribution to journalArticle

  26. Host Susceptibility to Severe Influenza A Virus Infection

    Clohisey, S. & Baillie, J., 5 Sep 2019, In : Critical Care.

    Research output: Contribution to journalArticle

  27. Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients.

    Chang, E. M., Bretherick, A., Drummond, G. B., Baillie, J. & Baillie, J., 20 Aug 2019, In : Intensive care medicine experimental .

    Research output: Contribution to journalArticle

  28. The utility of peripheral blood leucocyte ratios as biomarkers in infectious diseases: a systematic review and meta-analysis

    Russell, C. D., Parajuli, A., Gale, H. J., Bulteel, N. S., Schuetz, P., de Jager, C. P. C., Loonen, A. J. M., Merekoulias, G. I. & Baillie, J., 22 Feb 2019, In : Journal of Infection.

    Research output: Contribution to journalArticle

  29. 2018
  30. The Search for Efficacious New Therapies in Sepsis Needs to Embrace Heterogeneity

    Scicluna, B. P. & Baillie, J. K., 12 Dec 2018, In : American Journal of Respiratory and Critical Care Medicine.

    Research output: Contribution to journalArticle

  31. Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

    IIBDGC Consortium & FANTOM5 Consortium , 1 Mar 2018, In : PLoS Computational Biology. 14, 3, p. e1005934

    Research output: Contribution to journalArticle

  32. The 2018 Lake Louise Acute Mountain Sickness Score

    Roach, R. C., Hackett, P. H., Oelz, O., Bärtsch, P., Luks, A. M., MacInnis, M. J., Baillie, J. K. & Lake Louise AMS Score Consensus Committee, 1 Mar 2018, In : High Altitude Medicine and Biology. 19, 1, p. 4-6 3 p.

    Research output: Contribution to journalArticle

  33. Thromboelastometry and Platelet Function during Acclimatization to High Altitude

    Rocke, A. S., Paterson, G. G., Barber, M. T., Jackson, A. I. R., Main, S., Stannett, C., Schnopp, M. F., Baillie, J. K., Horne, E. H., Moores, C., Harrison, P., Nimmo, A. F. & Thompson, A. A. R., 5 Jan 2018, In : Thrombosis and Haemostasis. 118, 1, p. 63-71 9 p.

    Research output: Contribution to journalArticle

  34. 2017
  35. FANTOM5 CAGE profiles of human and mouse samples

    Noguchi, S., Arakawa, T., Fukuda, S., Furuno, M., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Kaida, K., Kaiho, A., Kanamori-Katayama, M., Kawashima, T., Kojima, M., Kubosaki, A., Manabe, R-I., Murata, M., Nagao-Sato, S., Nakazato, K., Ninomiya, N., Nishiyori-Sueki, H., Noma, S. & 158 others, Saijyo, E., Saka, A., Sakai, M., Simon, C., Suzuki, N., Tagami, M., Watanabe, S., Yoshida, S., Arner, P., Axton, R. A., Babina, M., Baillie, J. K., Barnett, T. C., Beckhouse, A. G., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Carlisle, A. J., Clevers, H. C., Davis, C. A., Detmar, M., Dohi, T., Edge, A. S. B., Edinger, M., Ehrlund, A., Ekwall, K., Endoh, M., Enomoto, H., Eslami, A., Fagiolini, M., Fairbairn, L., Farach-Carson, M. C., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L. M., Fujita, R., Furusawa, J-I., Geijtenbeek, T. B., Gingeras, T., Goldowitz, D., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Hasegawa, Y., Herlyn, M., Heutink, P., Hitchens, K. J., Hume, D. A., Ikawa, T., Ishizu, Y., Kai, C., Kawamoto, H., Kawamura, Y. I., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klein, S., Klinken, S. P., Knox, A. J., Kojima, S., Koseki, H., Koyasu, S., Lee, W., Lennartsson, A., Mackay-Sim, A., Mejhert, N., Mizuno, Y., Morikawa, H., Morimoto, M., Moro, K., Morris, K. J., Motohashi, H., Mummery, C. L., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nozaki, T., Ogishima, S., Ohkura, N., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Passier, R., Patrikakis, M., Pombo, A., Pradhan-Bhatt, S., Qin, X-Y., Rehli, M., Rizzu, P., Roy, S., Sajantila, A., Sakaguchi, S., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schmidl, C., Schneider, C., Schulze-Tanzil, G. G., Schwegmann, A., Sheng, G., Shin, J. W., Sugiyama, D., Sugiyama, T., Summers, K. M., Takahashi, N., Takai, J., Tanaka, H., Tatsukawa, H., Tomoiu, A., Toyoda, H., van de Wetering, M., van den Berg, L. M., Verardo, R., Vijayan, D., Wells, C. A., Winteringham, L. N., Wolvetang, E., Yamaguchi, Y., Yamamoto, M., Yanagi-Mizuochi, C., Yoneda, M., Yonekura, Y., Zhang, P. G., Zucchelli, S., Abugessaisa, I., Arner, E., Harshbarger, J., Kondo, A., Lassmann, T., Lizio, M., Sahin, S., Sengstag, T., Severin, J., Shimoji, H., Suzuki, M., Suzuki, H., Kawai, J., Kondo, N., Itoh, M., Daub, C. O., Kasukawa, T., Kawaji, H., Carninci, P., Forrest, A. R. R. & Hayashizaki, Y., 29 Aug 2017, In : Scientific Data. 4, 170112.

    Research output: Contribution to journalArticle

  36. Treatable traits and therapeutic targets: goals for systems biology in infectious disease

    Russell, C. & Baillie, J., 27 Apr 2017, In : Current Opinion in Systems Biology. 2, p. 140-146

    Research output: Contribution to journalArticle

  37. Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

    Baillie, J. K., Arner, E., Daub, C., De Hoon, M., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., The FANTOM Consortium, Faulkner, G. J., Wells, C. A., Rehli, M., Pavli, P., Summers, K. M. & Hume, D. A., 6 Mar 2017, In : PLoS Genetics. 13, 3, e1006641.

    Research output: Contribution to journalArticle

  38. Middle East Respiratory Syndrome

    Arabi, Y. M., Balkhy, H. H., Hayden, F. G., Bouchama, A., Luke, T., Baillie, J., Al-Omari, A., Hajeer, A. H., Senga, M., Denison, M. R., Nguyen-Van-Tam, J. S., Shindo, N., Bermingham, A., Chappell, J. D., Van Kerkhove, M. D. & Fowler, R. A., 9 Feb 2017, In : New England Journal of Medicine. 376, p. 584-594 11 p.

    Research output: Contribution to journalArticle

  39. 2016
  40. FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells

    Kasukawa, T., Lizio, M., Harshbarger, J., Hisashi, S., Severin, J., Imad, A., Sahin, S., Freeman, T. C., Baillie, K., Sandelin, A., Carninci, P., Forrest, A. R. R., Kawaji, H. & FANTOM Consortium, 26 May 2016, In : Human genomics. 10, Suppt. 1, p. 34 2 p., P42.

    Research output: Contribution to journalMeeting abstract

  41. Microglial brain region−dependent diversity and selective regional sensitivities to aging

    Renault, K., Michoel, T., Karavolos, M., Clohisey, S., Baillie, J., Stevens, M., Freeman, T., Summers, K. & McColl, B., Mar 2016, In : Nature Neuroscience. 19, 3, p. 504-516

    Research output: Contribution to journalArticle

  42. 2015
  43. The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

    Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., FANTOM consortium & Huminiecki, L., 18 Dec 2015, In : PLoS Biology. 13, 12, e1002315.

    Research output: Contribution to journalArticle

  44. The role of host genetic factors in respiratory tract infectious diseases: systematic review, meta-analyses and field synopsis

    Patarčić, I., Gelemanović, A., Kirin, M., Kolčić, I., Theodoratou, E., Baillie, K. J., de Jong, M. D., Rudan, I., Campbell, H. & Polašek, O., 3 Nov 2015, In : Scientific Reports. 5, p. 16119

    Research output: Contribution to journalArticle

  45. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

    Arner, E., Daub, C. O., Vitting-Seerup, K., Andersson, R., Lilje, B., Drabløs, F., Lennartsson, A., Rönnerblad, M., Hrydziuszko, O., Vitezic, M., Freeman, T. C., Alhendi, A. M. N., Arner, P., Axton, R., Baillie, J. K., Beckhouse, A., Bodega, B., Briggs, J., Brombacher, F., Davis, M. & 31 others, Detmar, M., Ehrlund, A., Endoh, M., Eslami, A., Fagiolini, M., Fairbairn, L., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L., Goldowitz, D., Guler, R., Ha, T., Hara, M., Herlyn, M., Ikawa, T., Kai, C., Kawamoto, H., Khachigian, L. M., Klinken, S. P., Kojima, S., Koseki, H., Klein, S., Mejhert, N., Miyaguchi, K., Mizuno, Y., Morimoto, M., Tomoiu, A., Summers, K. M., Hume, D. A. & FANTOM Consortium, 27 Feb 2015, In : Science. 347, 6225, p. 1010-1014 5 p.

    Research output: Contribution to journalArticle

  46. Gateways to the FANTOM5 promoter level mammalian expression atlas

    Lizio, M., Harshbarger, J., Shimoji, H., Severin, J., Kasukawa, T., Sahin, S., Abugessaisa, I., Fukuda, S., Hori, F., Ishikawa-Kato, S., Mungall, C. J., Arner, E., Baillie, J. K., Bertin, N., Bono, H., de Hoon, M., Diehl, A. D., Dimont, E., Freeman, T. C., Fujieda, K. & 22 others, Hide, W., Kaliyaperumal, R., Katayama, T., Lassmann, T., Meehan, T. F., Nishikata, K., Ono, H., Rehli, M., Sandelin, A., Schultes, E. A., Hoen, P. A. C., Tatum, Z., Thompson, M., Toyoda, T., Wright, D. W., Daub, C. O., Itoh, M., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Kawaji, H. & FANTOM Consortium, 5 Jan 2015, In : Genome Biology. 16, 14 p., 22.

    Research output: Contribution to journalArticle

  47. The Effectiveness of Convalescent Plasma and Hyperimmune Immunoglobulin for the Treatment of Severe Acute Respiratory Infections of Viral Etiology: A Systematic Review and Exploratory Meta-analysis

    Mair-Jenkins, J., Saavedra-Campos, M., Baillie, J. K., Cleary, P., Khaw, F-M., Lim, W. S., Makki, S., Rooney, K. D., Beck, C. R. & Convalescent Plasma Study Group, 1 Jan 2015, In : The Journal of Infectious Diseases. 211, 1, p. 80-90 11 p.

    Research output: Contribution to journalLiterature review

  48. 2014
  49. Antiviral combinations for severe influenza

    Dunning, J., Baillie, J. K., Cao, B., Hayden, F. G. & International Severe Acute Respiratory and Emerging Infection Consortium (ISARIC), Dec 2014, In : The Lancet Infectious Diseases. 14, 12, p. 1259-70 12 p.

    Research output: Contribution to journalArticle

  50. Stratified infection medicine: a call to arms

    Russell, C., Griffiths, S. J., Baillie, J. K. & Haas, J., Jun 2014, In : The Lancet Infectious Diseases. 14, 6, p. 451-451 1 p.

    Research output: Contribution to journalLetter

  51. Translational genomics. Targeting the host immune response to fight infection

    Baillie, J. K., 23 May 2014, In : Science. 344, 6186, p. 807-808 2 p.

    Research output: Contribution to journalEditorial

  52. Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

    Davis, M. R., Andersson, R., Severin, J., De Hoon, M., Bertin, N., Baillie, J. K., Kawaji, H., Sandelin, A., Forrest, A. R. R., Summers, K. M. & Fantom Consortium, 1 May 2014, In : Molecular Genetics and Metabolism. 112, 1, p. 73-83

    Research output: Contribution to journalArticle

  53. A promoter-level mammalian expression atlas

    Forrest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jorgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 32 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Alam, I., Albanese, D., Altschuler, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Fisher, M. E., Ha, T. J., Joshi, A., Meynert, A., Prendergast, J. G. D., Summers, K. M., Freeman, T. C., Taylor, M. S., Hume, D. A., FANTOM Consortium & RIKEN PMI CLST DGT, 27 Mar 2014, In : Nature. 507, 7493, p. 462-470 9 p.

    Research output: Contribution to journalArticle

  54. An atlas of active enhancers across human cell types and tissues

    Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 31 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., FANTOM Consortium, Young, R. S., Fisher, M. E., Meynert, A., Prendergast, J. G. D. & Taylor, M. S., 26 Mar 2014, In : Nature. 507, 7493, p. 455-61 7 p.

    Research output: Contribution to journalArticle

  55. Network analysis reveals distinct clinical syndromes underlying acute mountain sickness

    Hall, D. P., MacCormick, I. J. C., Phythian-Adams, A. T., Rzechorzek, N. M., Hope-Jones, D., Cosens, S., Jackson, S., Bates, M. G. D., Collier, D. J., Hume, D. A., Freeman, T., Thompson, A. A. R. & Baillie, J. K., 22 Jan 2014, In : PLoS ONE. 9, 1, p. e81229

    Research output: Contribution to journalArticle

  56. Open source clinical science for emerging infections

    Dunning, J. W., Merson, L., Rohde, G. G. U., Gao, Z., Semple, M. G., Tran, D., Gordon, A., Olliaro, P. L., Khoo, S. H., Bruzzone, R., Horby, P., Cobb, J. P., Longuere, K-S., Kellam, P., Nichol, A., Brett, S., Everett, D., Walsh, T. S., Hien, T-T., Yu, H. & 15 others, Zambon, M., Ruiz-Palacios, G., Lang, T., Akhvlediani, T., Hayden, F. G., Marshall, J., Webb, S., Angus, D. C., Shindo, N., van der Werf, S., Openshaw, P. J. M., Farrar, J., Carson, G., Baillie, J. K. & ISARIC Working Group 3, ISARIC Council, Jan 2014, In : The Lancet Infectious Diseases. 14, 1, p. 8-9 2 p.

    Research output: Contribution to journalComment/debate

  57. Heteroresistance at the single-cell level: adapting to antibiotic stress through a population-based strategy and growth-controlled interphenotypic coordination

    Wang, X., Kang, Y., Luo, C., Zhao, T., Liu, L., Jiang, X., Fu, R., An, S., Chen, J., Jiang, N., Ren, L., Wang, Q., Baillie, J. K., Gao, Z. & Yu, J., 2014, In : mBio. 5, 1, p. e00942-13

    Research output: Contribution to journalArticle

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