Edinburgh Research Explorer

Dr Malcolm Fisher

(Former employee or visitor)

  1. 2017
  2. FANTOM5 CAGE profiles of human and mouse samples

    Noguchi, S., Arakawa, T., Fukuda, S., Furuno, M., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Kaida, K., Kaiho, A., Kanamori-Katayama, M., Kawashima, T., Kojima, M., Kubosaki, A., Manabe, R-I., Murata, M., Nagao-Sato, S., Nakazato, K., Ninomiya, N., Nishiyori-Sueki, H., Noma, S. & 158 others, Saijyo, E., Saka, A., Sakai, M., Simon, C., Suzuki, N., Tagami, M., Watanabe, S., Yoshida, S., Arner, P., Axton, R. A., Babina, M., Baillie, J. K., Barnett, T. C., Beckhouse, A. G., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Carlisle, A. J., Clevers, H. C., Davis, C. A., Detmar, M., Dohi, T., Edge, A. S. B., Edinger, M., Ehrlund, A., Ekwall, K., Endoh, M., Enomoto, H., Eslami, A., Fagiolini, M., Fairbairn, L., Farach-Carson, M. C., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L. M., Fujita, R., Furusawa, J-I., Geijtenbeek, T. B., Gingeras, T., Goldowitz, D., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Hasegawa, Y., Herlyn, M., Heutink, P., Hitchens, K. J., Hume, D. A., Ikawa, T., Ishizu, Y., Kai, C., Kawamoto, H., Kawamura, Y. I., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klein, S., Klinken, S. P., Knox, A. J., Kojima, S., Koseki, H., Koyasu, S., Lee, W., Lennartsson, A., Mackay-Sim, A., Mejhert, N., Mizuno, Y., Morikawa, H., Morimoto, M., Moro, K., Morris, K. J., Motohashi, H., Mummery, C. L., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nozaki, T., Ogishima, S., Ohkura, N., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Passier, R., Patrikakis, M., Pombo, A., Pradhan-Bhatt, S., Qin, X-Y., Rehli, M., Rizzu, P., Roy, S., Sajantila, A., Sakaguchi, S., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schmidl, C., Schneider, C., Schulze-Tanzil, G. G., Schwegmann, A., Sheng, G., Shin, J. W., Sugiyama, D., Sugiyama, T., Summers, K. M., Takahashi, N., Takai, J., Tanaka, H., Tatsukawa, H., Tomoiu, A., Toyoda, H., van de Wetering, M., van den Berg, L. M., Verardo, R., Vijayan, D., Wells, C. A., Winteringham, L. N., Wolvetang, E., Yamaguchi, Y., Yamamoto, M., Yanagi-Mizuochi, C., Yoneda, M., Yonekura, Y., Zhang, P. G., Zucchelli, S., Abugessaisa, I., Arner, E., Harshbarger, J., Kondo, A., Lassmann, T., Lizio, M., Sahin, S., Sengstag, T., Severin, J., Shimoji, H., Suzuki, M., Suzuki, H., Kawai, J., Kondo, N., Itoh, M., Daub, C. O., Kasukawa, T., Kawaji, H., Carninci, P., Forrest, A. R. R. & Hayashizaki, Y., 29 Aug 2017, In : Scientific Data. 4, 170112.

    Research output: Contribution to journalArticle

  3. 2015
  4. The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

    Hurst, L. D., Ghanbarian, A. T., Forrest, A. R. R., FANTOM consortium & Huminiecki, L., 18 Dec 2015, In : PLoS Biology. 13, 12, e1002315.

    Research output: Contribution to journalArticle

  5. Gene regulation. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

    Arner, E., Daub, C. O., Vitting-Seerup, K., Andersson, R., Lilje, B., Drabløs, F., Lennartsson, A., Rönnerblad, M., Hrydziuszko, O., Vitezic, M., Freeman, T. C., Alhendi, A. M. N., Arner, P., Axton, R., Baillie, J. K., Beckhouse, A., Bodega, B., Briggs, J., Brombacher, F., Davis, M. & 31 others, Detmar, M., Ehrlund, A., Endoh, M., Eslami, A., Fagiolini, M., Fairbairn, L., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L., Goldowitz, D., Guler, R., Ha, T., Hara, M., Herlyn, M., Ikawa, T., Kai, C., Kawamoto, H., Khachigian, L. M., Klinken, S. P., Kojima, S., Koseki, H., Klein, S., Mejhert, N., Miyaguchi, K., Mizuno, Y., Morimoto, M., Tomoiu, A., Summers, K. M., Hume, D. A. & FANTOM Consortium, 27 Feb 2015, In : Science. 347, 6225, p. 1010-4 5 p.

    Research output: Contribution to journalArticle

  6. 2014
  7. MOONS: the Multi-Object Optical and Near-infrared Spectrograph for the VLT

    Cirasuolo, M., Afonso, J., Carollo, M., Flores, H., Maiolino, R., Oliva, E., Paltani, S., Vanzi, L., Evans, C., Abreu, M., Atkinson, D., Babusiaux, C., Beard, S., Bauer, F., Bellazzini, M., Bender, R., Best, P., Bezawada, N., Bonifacio, P., Bragaglia, A. & 87 others, Bryson, I., Busher, D., Cabral, A., Caputi, K., Centrone, M., Chemla, F., Cimatti, A., Cioni, M-R., Clementini, G., Coelho, J., Crnojevic, D., Daddi, E., Dunlop, J., Eales, S., Feltzing, S., Ferguson, A., Fisher, M., Fontana, A., Fynbo, J., Garilli, B., Gilmore, G., Glauser, A., Guinouard, I., Hammer, F., Hastings, P., Hess, A., Ivison, R., Jagourel, P., Jarvis, M., Kaper, L., Kauffman, G., Kitching, A. T., Lawrence, A., Lee, D., Lemasle, B., Licausi, G., Lilly, S., Lorenzetti, D., Lunney, D., Maiolino, R., Mannucci, F., McLure, R., Minniti, D., Montgomery, D., Muschielok, B., Nandra, K., Navarro, R., Norberg, P., Oliver, S., Origlia, L., Padilla, N., Peacock, J., Pedichini, F., Peng, J., Pentericci, L., Pragt, J., Puech, M., Randich, S., Rees, P., Renzini, A., Ryde, N., Rodrigues, M., Roseboom, I., Royer, F., Saglia, R., Sanchez, A., Schiavon, R., Schnetler, H., Sobral, D., Speziali, R., Sun, D., Stuik, R., Taylor, A., Taylor, W., Todd, S., Tolstoy, E., Torres, M., Tosi, M., Vanzella, E., Venema, L., Vitali, F., Wegner, M., Wells, M., Wild, V., Wright, G., Zamorani, G. & Zoccali, M., 1 Jul 2014, In : Proceedings of SPIE. 9147

    Research output: Contribution to journalArticle

  8. A promoter-level mammalian expression atlas

    Forrest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., de Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jorgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U. & 32 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Alam, I., Albanese, D., Altschuler, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Fisher, M. E., Ha, T. J., Joshi, A., Meynert, A., Prendergast, J. G. D., Summers, K. M., Freeman, T. C., Taylor, M. S., Hume, D. A., FANTOM Consortium & RIKEN PMI CLST DGT, 27 Mar 2014, In : Nature. 507, 7493, p. 462-+ 22 p.

    Research output: Contribution to journalArticle

  9. An atlas of active enhancers across human cell types and tissues

    Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 31 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., FANTOM Consortium, Young, R. S., Fisher, M. E., Meynert, A., Prendergast, J. G. D. & Taylor, M. S., 27 Mar 2014, In : Nature. 507, 7493, p. 455-61 7 p.

    Research output: Contribution to journalArticle

  10. 2013
  11. A trans-acting protein effect causes severe eye malformation in the mp mouse

    Rainger, J., Keighren, M., Keene, D. R., Charbonneau, N. L., Rainger, J. K., Fisher, M., Mella, S., Huang, J. T-J., Rose, L., Van't Hof, R., Sakai, L. Y., Jackson, I. J. & Fitzpatrick, D. R., Dec 2013, In : PLoS Genetics. 9, 12, p. e1003998

    Research output: Contribution to journalArticle

  12. Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

    Shukla, R., Upton, K. R., Munoz-Lopez, M., Gerhardt, D. J., Fisher, M. E., Thu Nguyen, N. V., Brennan, P. M., Baillie, J. K., Collino, A., Ghisletti, S., Sinha, S., Iannelli, F., Radaelli, E., Dos Santos, A., Rapoud, D., Guettier, C., Samuel, D., Natoli, G., Carninci, P., Ciccarelli, F. D. & 3 others, Garcia-Perez, J., Faivre, J. & Faulkner, G. J., 28 Mar 2013, In : Cell. 153, 1, p. 101-111 11 p.

    Research output: Contribution to journalArticle

  13. 2011
  14. Will earlier diagnosis of HIV infection in late presenters reduce the frequency of serious opportunistic infections? Response

    Waters, L., Fisher, M., Anderson, J., Wood, C., Delpech, V., Hill, T., Walsh, J., Orkin, C., Bansi, L., Gompels, M., Phillips, A., Johnson, M., Gilson, R., Easterbrook, P., Leen, C., Porter, K., Gazzard, B., Sabin, C. & UK CHIC Steering Comm, Aug 2011, In : HIV Medicine. 12, 7, p. 450-451 2 p.

    Research output: Contribution to journalLetter

  15. Loss of the BMP Antagonist, SMOC-1, Causes Ophthalmo-Acromelic (Waardenburg Anophthalmia) Syndrome in Humans and Mice

    Rainger, J., van Beusekom, E., Ramsay, J. K., McKie, L., Al-Gazali, L., Pallotta, R., Saponari, A., Branney, P., Fisher, M., Morrison, H., Bicknell, L., Gautier, P., Perry, P., Sokhi, K., Sexton, D., Bardakjian, T. M., Schneider, A. S., Elcioglu, N., Ozkinay, F., Koenig, R. & 16 others, Mégarbané, A., Semerci, C. N., Khan, A., Zafar, S., Hennekam, R., Sousa, S. B., Ramos, L., Garavelli, L., Furga, A. S., Wischmeijer, A., Jackson, I. J., Gillessen-Kaesbach, G., Brunner, H. G., Wieczorek, D., van Bokhoven, H. & Fitzpatrick, D. R., Jul 2011, In : PLoS Genetics. 7, 7, e1002114.

    Research output: Contribution to journalArticle

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